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GlobalNamesArchitecture/dwca-hunter

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Showing 91 of 144 total issues

Method generate_dwca has 84 lines of code (exceeds 25 allowed). Consider refactoring.
Open

    def generate_dwca
      DwcaHunter.logger_write(object_id,
                              "Creating DarwinCore Archive file")
      @core = [
        ["http://rs.tdwg.org/dwc/terms/taxonID",
Severity: Major
Found in lib/dwca_hunter/resources/wikispecies.rb - About 3 hrs to fix

    Method generate_dwca has 81 lines of code (exceeds 25 allowed). Consider refactoring.
    Open

        def generate_dwca
      DwcaHunter.logger_write(object_id,
                              'Creating DarwinCore Archive file')
      @core = [['http://rs.tdwg.org/dwc/terms/taxonID',
                'http://rs.tdwg.org/dwc/terms/scientificName',
    Severity: Major
    Found in lib/dwca_hunter/resources/ioc_word_bird.rb - About 3 hrs to fix

      Method get_classification has a Cognitive Complexity of 22 (exceeds 5 allowed). Consider refactoring.
      Open

          def get_classification
      DwcaHunter.logger_write(object_id, "Building classification...")
      open(@nodes_file, "r:utf-8").each_with_index do |line, i|
        DwcaHunter.logger_write(object_id, "Collected %s nodes..." % i) if i > 0 && i % BATCH_SIZE == 0
        line = line.split("|").map { |l| cleanup(l) }
      Severity: Minor
      Found in lib/dwca_hunter/resources/ncbi.rb - About 3 hrs to fix

      Cognitive Complexity

      Cognitive Complexity is a measure of how difficult a unit of code is to intuitively understand. Unlike Cyclomatic Complexity, which determines how difficult your code will be to test, Cognitive Complexity tells you how difficult your code will be to read and comprehend.

      A method's cognitive complexity is based on a few simple rules:

      • Code is not considered more complex when it uses shorthand that the language provides for collapsing multiple statements into one
      • Code is considered more complex for each "break in the linear flow of the code"
      • Code is considered more complex when "flow breaking structures are nested"

      Further reading

      Method generate_dwca has a Cognitive Complexity of 22 (exceeds 5 allowed). Consider refactoring.
      Open

          def generate_dwca
      DwcaHunter.logger_write(object_id,
                              "Creating DarwinCore Archive file")
      @core = [
        ["http://rs.tdwg.org/dwc/terms/taxonID",
      Severity: Minor
      Found in lib/dwca_hunter/resources/wikispecies.rb - About 3 hrs to fix

      Cognitive Complexity

      Cognitive Complexity is a measure of how difficult a unit of code is to intuitively understand. Unlike Cyclomatic Complexity, which determines how difficult your code will be to test, Cognitive Complexity tells you how difficult your code will be to read and comprehend.

      A method's cognitive complexity is based on a few simple rules:

      • Code is not considered more complex when it uses shorthand that the language provides for collapsing multiple statements into one
      • Code is considered more complex for each "break in the linear flow of the code"
      • Code is considered more complex when "flow breaking structures are nested"

      Further reading

      File wikispecies.rb has 293 lines of code (exceeds 250 allowed). Consider refactoring.
      Open

      module DwcaHunter
  # Wikispecies source
  class ResourceWikispecies < DwcaHunter::Resource
    def initialize(opts = { download: true, unpack: true })
      @wikisp_path = File.join(Dir.tmpdir, "dwca_hunter", "wikispecies")
      Severity: Minor
      Found in lib/dwca_hunter/resources/wikispecies.rb - About 3 hrs to fix

        Method generate_dwca has 75 lines of code (exceeds 25 allowed). Consider refactoring.
        Open

            def generate_dwca
      DwcaHunter.logger_write(object_id,
                              "Creating DarwinCore Archive file")
      @core = [["http://rs.tdwg.org/dwc/terms/taxonID",
                "http://rs.tdwg.org/dwc/terms/acceptedNameUsageID",
        Severity: Major
        Found in lib/dwca_hunter/resources/fungal_names.rb - About 3 hrs to fix

          Method collect_names has a Cognitive Complexity of 20 (exceeds 5 allowed). Consider refactoring.
          Open

              def collect_names
      @names_index = {}
      file = CSV.open(File.join(@download_dir, 'data.csv'),
                      headers: true)
      order = ''
          Severity: Minor
          Found in lib/dwca_hunter/resources/ioc_word_bird.rb - About 2 hrs to fix

          Cognitive Complexity

          Cognitive Complexity is a measure of how difficult a unit of code is to intuitively understand. Unlike Cyclomatic Complexity, which determines how difficult your code will be to test, Cognitive Complexity tells you how difficult your code will be to read and comprehend.

          A method's cognitive complexity is based on a few simple rules:

          • Code is not considered more complex when it uses shorthand that the language provides for collapsing multiple statements into one
          • Code is considered more complex for each "break in the linear flow of the code"
          • Code is considered more complex when "flow breaking structures are nested"

          Further reading

          Method generate_dwca has 68 lines of code (exceeds 25 allowed). Consider refactoring.
          Open

              def generate_dwca
      DwcaHunter::logger_write(self.object_id,
                               "Creating DarwinCore Archive file")
      @core = [['http://rs.tdwg.org/dwc/terms/taxonID',
                'http://rs.tdwg.org/dwc/terms/parentNameUsageID',
          Severity: Major
          Found in lib/dwca_hunter/resources/reptiles_checklist.rb - About 2 hrs to fix

            Method collect_names has a Cognitive Complexity of 19 (exceeds 5 allowed). Consider refactoring.
            Open

                def collect_names
      @names_index = {}
      file = CSV.open(File.join(@download_dir, find_csv_file),
        headers: true)
      file.each do |row|
            Severity: Minor
            Found in lib/dwca_hunter/resources/algaebase.rb - About 2 hrs to fix

            Cognitive Complexity

            Cognitive Complexity is a measure of how difficult a unit of code is to intuitively understand. Unlike Cyclomatic Complexity, which determines how difficult your code will be to test, Cognitive Complexity tells you how difficult your code will be to read and comprehend.

            A method's cognitive complexity is based on a few simple rules:

            • Code is not considered more complex when it uses shorthand that the language provides for collapsing multiple statements into one
            • Code is considered more complex for each "break in the linear flow of the code"
            • Code is considered more complex when "flow breaking structures are nested"

            Further reading

            Method generate_dwca has 64 lines of code (exceeds 25 allowed). Consider refactoring.
            Open

                def generate_dwca
      DwcaHunter.logger_write(object_id,
                              "Creating DarwinCore Archive file")
      @core = [["http://rs.tdwg.org/dwc/terms/taxonID",
                "http://rs.tdwg.org/dwc/terms/scientificName",
            Severity: Major
            Found in lib/dwca_hunter/resources/clements.rb - About 2 hrs to fix

              Method generate_dwca has 62 lines of code (exceeds 25 allowed). Consider refactoring.
              Open

                  def generate_dwca
      DwcaHunter.logger_write(object_id, "Creating DarwinCore Archive file")
      @core = [["http://rs.tdwg.org/dwc/terms/taxonId",
                "http://purl.org/dc/terms/scientificName",
                "http://purl.org/dc/terms/parentNameUsageId",
              Severity: Major
              Found in lib/dwca_hunter/resources/ncbi.rb - About 2 hrs to fix

                Method generate_dwca has 62 lines of code (exceeds 25 allowed). Consider refactoring.
                Open

                    def generate_dwca
      DwcaHunter.logger_write(object_id,
                              "Creating DarwinCore Archive file")
      @core = [["http://rs.tdwg.org/dwc/terms/taxonID",
                "http://rs.tdwg.org/dwc/terms/scientificName",
                Severity: Major
                Found in lib/dwca_hunter/resources/mammal_divdb.rb - About 2 hrs to fix

                  Method generate_dwca has 58 lines of code (exceeds 25 allowed). Consider refactoring.
                  Open

                      def generate_dwca
      DwcaHunter.logger_write(object_id, "Creating DarwinCore Archive file")
      @core = [["http://rs.tdwg.org/dwc/terms/taxonID",
                "http://rs.tdwg.org/dwc/terms/scientificName",
                "http://rs.tdwg.org/dwc/terms/acceptedNameUsageID",
                  Severity: Major
                  Found in lib/dwca_hunter/resources/lcvp.rb - About 2 hrs to fix

                    Method get_names has a Cognitive Complexity of 17 (exceeds 5 allowed). Consider refactoring.
                    Open

                        def get_names
      DwcaHunter.logger_write(object_id, "Collecting names...")
      open(@names_file).each_with_index do |line, i|
        DwcaHunter.logger_write(object_id, "Collected %s names..." % i) if i > 0 && i % BATCH_SIZE == 0
        line = line.split("|").map { |l| cleanup(l) }
                    Severity: Minor
                    Found in lib/dwca_hunter/resources/ncbi.rb - About 2 hrs to fix

                    Cognitive Complexity

                    Cognitive Complexity is a measure of how difficult a unit of code is to intuitively understand. Unlike Cyclomatic Complexity, which determines how difficult your code will be to test, Cognitive Complexity tells you how difficult your code will be to read and comprehend.

                    A method's cognitive complexity is based on a few simple rules:

                    • Code is not considered more complex when it uses shorthand that the language provides for collapsing multiple statements into one
                    • Code is considered more complex for each "break in the linear flow of the code"
                    • Code is considered more complex when "flow breaking structures are nested"

                    Further reading

                    Method generate_dwca has 56 lines of code (exceeds 25 allowed). Consider refactoring.
                    Open

                        def generate_dwca
      DwcaHunter.logger_write(object_id, "Creating DarwinCore Archive file")
      @core = [["http://rs.tdwg.org/dwc/terms/taxonID",
                "http://rs.tdwg.org/dwc/terms/scientificName",
                "http://rs.tdwg.org/dwc/terms/acceptedNameUsageID",
                    Severity: Major
                    Found in lib/dwca_hunter/resources/wcvp.rb - About 2 hrs to fix

                      Method collect_names has 55 lines of code (exceeds 25 allowed). Consider refactoring.
                      Open

                          def collect_names
      @names_index = {}
      file = CSV.open(File.join(@download_dir, 'data.csv'),
                      headers: true)
      order = ''
                      Severity: Major
                      Found in lib/dwca_hunter/resources/ioc_word_bird.rb - About 2 hrs to fix

                        Method generate_dwca has 53 lines of code (exceeds 25 allowed). Consider refactoring.
                        Open

                            def generate_dwca
      DwcaHunter.logger_write(object_id,
                              "Creating DarwinCore Archive file")
      @core = [["http://rs.tdwg.org/dwc/terms/taxonID",
                "http://rs.tdwg.org/dwc/terms/scientificName",
                        Severity: Major
                        Found in lib/dwca_hunter/resources/index-fungorum.rb - About 2 hrs to fix

                          Method generate_dwca has 53 lines of code (exceeds 25 allowed). Consider refactoring.
                          Open

                              def generate_dwca
      DwcaHunter.logger_write(object_id,
                              "Creating DarwinCore Archive file")
      @core = [["http://rs.tdwg.org/dwc/terms/taxonID",
                "http://rs.tdwg.org/dwc/terms/scientificName",
                          Severity: Major
                          Found in lib/dwca_hunter/resources/arctos.rb - About 2 hrs to fix

                            Method generate_dwca has 53 lines of code (exceeds 25 allowed). Consider refactoring.
                            Open

                                def generate_dwca
      DwcaHunter.logger_write(object_id,
                              "Creating DarwinCore Archive file")
      @core = [["http://rs.tdwg.org/dwc/terms/taxonID",
                "http://rs.tdwg.org/dwc/terms/scientificName",
                            Severity: Major
                            Found in lib/dwca_hunter/resources/aos-birds.rb - About 2 hrs to fix

                              Method generate_dwca has 52 lines of code (exceeds 25 allowed). Consider refactoring.
                              Open

                                  def generate_dwca
      DwcaHunter.logger_write(object_id,
                              "Creating DarwinCore Archive file")
      @core = [["http://rs.tdwg.org/dwc/terms/taxonID",
                "http://rs.tdwg.org/dwc/terms/acceptedNameUsageID",
                              Severity: Major
                              Found in lib/dwca_hunter/resources/worms.rb - About 2 hrs to fix
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