| .circleci/config.yml | |
|
|
| .circleci/requirements.txt | |
|
|
| .gitignore | |
|
|
| .karr_lab_build_utils.yml | |
|
|
| CODE_OF_CONDUCT.md | |
|
|
| CONTRIBUTING.md | |
|
|
| LICENSE | |
|
|
| LICENSE-DATA | |
|
|
| LICENSE-DATABASE-STRUCTURE | |
|
|
| LICENSE-THIRD-PARTY-DATA | |
|
|
| MANIFEST.in | |
|
|
| README.md | |
|
|
| datanator/__init__.py | 1 | A 0 mins | A 100% |
| datanator/__main__.py | 593 | C 1 day | D 61% |
| datanator/_version.py | 1 | A 0 mins | A 100% |
| datanator/config/__init__.py | 1 | A 0 mins | A 100% |
| datanator/config/core.default.cfg | |
|
|
| datanator/config/core.py | 55 | A 0 mins | F 47% |
| datanator/config/core.schema.cfg | |
|
|
| datanator/core/__init__.py | 0 | A 0 mins | F 0% |
| datanator/core/data_model.py | 490 | F 4 days | A 92% |
| datanator/core/data_source.py | 480 | D 2 days | F 39% |
| datanator/data_source/__init__.py | 0 | A 0 mins | F 0% |
| datanator/data_source/array_express_excluded_dataset_ids.txt | |
|
|
| datanator/data_source/array_express_tools/__init__.py | 1 | A 0 mins | F 0% |
| datanator/data_source/array_express_tools/ensembl_tools.py | 234 | D 1 day | F 0% |
| datanator/data_source/array_express_tools/find_cdna_url.txt | |
|
|
| datanator/data_source/array_express_tools/kegg_taxon_prokaryotes.txt | |
|
|
| datanator/data_source/array_express_tools/taxon_exceptions.txt | |
|
|
| datanator/data_source/brenda/core.py | 365 | F 3 days |
|
| datanator/data_source/brenda/kinetic_constants.py | 20 | A 0 mins |
|
| datanator/data_source/brenda/reaction.py | 85 | C 1 day | C 76% |
| datanator/data_source/builds/__init__.py | 0 | A 0 mins | F 0% |
| datanator/data_source/builds/full.py | 14 | A 0 mins | F 0% |
| datanator/data_source/builds/med.py | 13 | A 0 mins | F 0% |
| datanator/data_source/builds/test.py | 13 | A 0 mins | F 0% |
| datanator/data_source/builds/test_log.py | 11 | A 0 mins | F 0% |
| datanator/data_source/corum_nosql.py | 208 | C 1 day | A 90% |
| datanator/data_source/ec.py | 104 | B 4 hrs | F 53% |
| datanator/data_source/gene_ortholog.py | 176 | D 2 days | F 29% |
| datanator/data_source/intact_nosql.py | 196 | C 1 day | A 93% |
| datanator/data_source/kegg_org_code.py | 146 | B 5 hrs | F 38% |
| datanator/data_source/kegg_orthology.py | 238 | D 2 days | F 35% |
| datanator/data_source/kegg_reaction_class.py | 170 | F 3 days | F 47% |
| datanator/data_source/kegg_taxon_prokaryotes.txt | |
|
|
| datanator/data_source/metabolite_concentration/doi_10_1038_nchembio_2077.py | 347 | F 6 days | F 22% |
| datanator/data_source/metabolite_concentration/query_demo.py | 55 | A 45 mins | D 63% |
| datanator/data_source/metabolite_nosql.py | 118 | C 1 day | F 28% |
| datanator/data_source/metabolites_meta_collection.py | 244 | F 5 days | F 37% |
| datanator/data_source/modomics.py | 222 | F 1 wk | F 0% |