KarrLab/wc_rules

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NameLines of codeMaintainabilityTest coverage
.circleci/config.yml
.gitattributes
.gitignore
.karr_lab_build_utils.yml
LICENSE
MANIFEST.in
README.md
docs/about.rst
docs/conf.py90
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docs/index.rst
docs/installation.rst
docs/references.bib
docs/references.rst
docs/requirements.txt
examples/fceri_ji/__init__.py0
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examples/fceri_ji/data/hierarchical/params.csv
examples/fceri_ji/data/hierarchical/params.json
examples/fceri_ji/data/hierarchical/params.plist
examples/fceri_ji/data/hierarchical/params.yaml
examples/fceri_ji/data/modular/binding.csv
examples/fceri_ji/data/modular/dephosphorylation.csv
examples/fceri_ji/data/modular/transphosphorylation.csv
examples/fceri_ji/data/sequential/edits.plist
examples/fceri_ji/data/sequential/params.yaml
examples/fceri_ji/load_data.py21
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examples/fceri_ji/model.py30
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examples/fceri_ji/original_model/contact_map.gml
examples/fceri_ji/original_model/contact_map.png
examples/fceri_ji/original_model/dimer.gml
examples/fceri_ji/original_model/fceri_ji.txt
examples/fceri_ji/original_model/model_description.png
examples/fceri_ji/schema/molecules.py9
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examples/fceri_ji/schema/sites.py20
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examples/fceri_ji/submodels/LigandReceptorBinding.py53
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examples/fceri_ji/submodels/LynKinase.py44
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examples/fceri_ji/submodels/LynReceptorBinding.py51
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examples/fceri_ji/submodels/SykKinase.py24
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examples/fceri_ji/submodels/SykReceptorBinding.py26
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examples/fceri_ji/submodels/dephosphorylation.py26
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examples/fceri_ji/submodels/naive.py76
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examples/fceri_ji/submodels2/LigandReceptorBinding.py39
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examples/fceri_ji/submodels2/LynKinase.py45
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examples/fceri_ji/submodels2/LynReceptorBinding.py36
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examples/fceri_ji/submodels2/SykKinase.py24
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examples/fceri_ji/submodels2/SykReceptorBinding.py25
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examples/fceri_ji/submodels2/dephosphorylation.py22
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examples/fceri_ji/submodels2/graphs.py67
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examples/fceri_ji/submodels2/templates.py53
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examples/fceri_ji/templates/graphs.py63
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examples/fceri_ji/templates/rules.py46
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