Ptrskay3/PySprint

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File dataset.py has 1313 lines of code (exceeds 700 allowed). Consider refactoring.
Open

"""
This file implements the Dataset class with all the functionality
that an interferogram should have in general.
"""
import base64
Severity: Major
Found in pysprint/core/bases/dataset.py - About 2 days to fix

    Phase has 35 functions (exceeds 20 allowed). Consider refactoring.
    Open

    class Phase:
        """
        A class that represents a phase obtained from various
        methods.
        """
    Severity: Minor
    Found in pysprint/core/phase.py - About 4 hrs to fix

      Identical blocks of code found in 2 locations. Consider refactoring.
      Open

          return b0 + b1 * x + b2 * x ** 2 + b3 * x ** 3 + b4 * x ** 4 + b5 * x ** 5
      Severity: Major
      Found in pysprint/core/_functions.py and 1 other location - About 4 hrs to fix
      pysprint/core/_functions.py on lines 33..38

      Duplicated Code

      Duplicated code can lead to software that is hard to understand and difficult to change. The Don't Repeat Yourself (DRY) principle states:

      Every piece of knowledge must have a single, unambiguous, authoritative representation within a system.

      When you violate DRY, bugs and maintenance problems are sure to follow. Duplicated code has a tendency to both continue to replicate and also to diverge (leaving bugs as two similar implementations differ in subtle ways).

      Tuning

      This issue has a mass of 85.

      We set useful threshold defaults for the languages we support but you may want to adjust these settings based on your project guidelines.

      The threshold configuration represents the minimum mass a code block must have to be analyzed for duplication. The lower the threshold, the more fine-grained the comparison.

      If the engine is too easily reporting duplication, try raising the threshold. If you suspect that the engine isn't catching enough duplication, try lowering the threshold. The best setting tends to differ from language to language.

      See codeclimate-duplication's documentation for more information about tuning the mass threshold in your .codeclimate.yml.

      Refactorings

      Further Reading

      Identical blocks of code found in 2 locations. Consider refactoring.
      Open

              b0
              + b1 * x
              + b2 * x ** 2
              + b3 * x ** 3
              + b4 * x ** 4
      Severity: Major
      Found in pysprint/core/_functions.py and 1 other location - About 4 hrs to fix
      pysprint/core/_functions.py on lines 52..52

      Duplicated Code

      Duplicated code can lead to software that is hard to understand and difficult to change. The Don't Repeat Yourself (DRY) principle states:

      Every piece of knowledge must have a single, unambiguous, authoritative representation within a system.

      When you violate DRY, bugs and maintenance problems are sure to follow. Duplicated code has a tendency to both continue to replicate and also to diverge (leaving bugs as two similar implementations differ in subtle ways).

      Tuning

      This issue has a mass of 85.

      We set useful threshold defaults for the languages we support but you may want to adjust these settings based on your project guidelines.

      The threshold configuration represents the minimum mass a code block must have to be analyzed for duplication. The lower the threshold, the more fine-grained the comparison.

      If the engine is too easily reporting duplication, try raising the threshold. If you suspect that the engine isn't catching enough duplication, try lowering the threshold. The best setting tends to differ from language to language.

      See codeclimate-duplication's documentation for more information about tuning the mass threshold in your .codeclimate.yml.

      Refactorings

      Further Reading

      Similar blocks of code found in 2 locations. Consider refactoring.
      Open

          for idx in min_indexes:
              if _between(x[idx], except_around) or np.abs(y[idx]) > threshold:
                  min_idx.append(idx)
      Severity: Major
      Found in pysprint/core/_preprocess.py and 1 other location - About 2 hrs to fix
      pysprint/core/_preprocess.py on lines 67..69

      Duplicated Code

      Duplicated code can lead to software that is hard to understand and difficult to change. The Don't Repeat Yourself (DRY) principle states:

      Every piece of knowledge must have a single, unambiguous, authoritative representation within a system.

      When you violate DRY, bugs and maintenance problems are sure to follow. Duplicated code has a tendency to both continue to replicate and also to diverge (leaving bugs as two similar implementations differ in subtle ways).

      Tuning

      This issue has a mass of 53.

      We set useful threshold defaults for the languages we support but you may want to adjust these settings based on your project guidelines.

      The threshold configuration represents the minimum mass a code block must have to be analyzed for duplication. The lower the threshold, the more fine-grained the comparison.

      If the engine is too easily reporting duplication, try raising the threshold. If you suspect that the engine isn't catching enough duplication, try lowering the threshold. The best setting tends to differ from language to language.

      See codeclimate-duplication's documentation for more information about tuning the mass threshold in your .codeclimate.yml.

      Refactorings

      Further Reading

      Similar blocks of code found in 2 locations. Consider refactoring.
      Open

          for idx in max_indexes:
              if _between(x[idx], except_around) or np.abs(y[idx]) > threshold:
                  max_idx.append(idx)
      Severity: Major
      Found in pysprint/core/_preprocess.py and 1 other location - About 2 hrs to fix
      pysprint/core/_preprocess.py on lines 70..72

      Duplicated Code

      Duplicated code can lead to software that is hard to understand and difficult to change. The Don't Repeat Yourself (DRY) principle states:

      Every piece of knowledge must have a single, unambiguous, authoritative representation within a system.

      When you violate DRY, bugs and maintenance problems are sure to follow. Duplicated code has a tendency to both continue to replicate and also to diverge (leaving bugs as two similar implementations differ in subtle ways).

      Tuning

      This issue has a mass of 53.

      We set useful threshold defaults for the languages we support but you may want to adjust these settings based on your project guidelines.

      The threshold configuration represents the minimum mass a code block must have to be analyzed for duplication. The lower the threshold, the more fine-grained the comparison.

      If the engine is too easily reporting duplication, try raising the threshold. If you suspect that the engine isn't catching enough duplication, try lowering the threshold. The best setting tends to differ from language to language.

      See codeclimate-duplication's documentation for more information about tuning the mass threshold in your .codeclimate.yml.

      Refactorings

      Further Reading

      Function parse_raw has 20 arguments (exceeds 8 allowed). Consider refactoring.
      Open

          def parse_raw(
      Severity: Major
      Found in pysprint/core/bases/dataset.py - About 2 hrs to fix

        Identical blocks of code found in 2 locations. Consider refactoring.
        Open

            window = (np.sqrt(1 + chirp ** 2) * 8 * np.log(2)) / (pulse_width ** 2)
        Severity: Major
        Found in pysprint/core/_generator.py and 1 other location - About 1 hr to fix
        pysprint/core/_generator.py on lines 49..49

        Duplicated Code

        Duplicated code can lead to software that is hard to understand and difficult to change. The Don't Repeat Yourself (DRY) principle states:

        Every piece of knowledge must have a single, unambiguous, authoritative representation within a system.

        When you violate DRY, bugs and maintenance problems are sure to follow. Duplicated code has a tendency to both continue to replicate and also to diverge (leaving bugs as two similar implementations differ in subtle ways).

        Tuning

        This issue has a mass of 53.

        We set useful threshold defaults for the languages we support but you may want to adjust these settings based on your project guidelines.

        The threshold configuration represents the minimum mass a code block must have to be analyzed for duplication. The lower the threshold, the more fine-grained the comparison.

        If the engine is too easily reporting duplication, try raising the threshold. If you suspect that the engine isn't catching enough duplication, try lowering the threshold. The best setting tends to differ from language to language.

        See codeclimate-duplication's documentation for more information about tuning the mass threshold in your .codeclimate.yml.

        Refactorings

        Further Reading

        Similar blocks of code found in 2 locations. Consider refactoring.
        Open

                if self.mode == "l":
                    self.envelope, self.y_env, self.loc = _calc_envelope(
                        self.y, np.arange(len(self.y)), "l"
                    )
                    plt.title("Adjust the lower envelope.")
        Severity: Major
        Found in pysprint/mpl_tools/normalize.py and 1 other location - About 1 hr to fix
        pysprint/mpl_tools/normalize.py on lines 26..30

        Duplicated Code

        Duplicated code can lead to software that is hard to understand and difficult to change. The Don't Repeat Yourself (DRY) principle states:

        Every piece of knowledge must have a single, unambiguous, authoritative representation within a system.

        When you violate DRY, bugs and maintenance problems are sure to follow. Duplicated code has a tendency to both continue to replicate and also to diverge (leaving bugs as two similar implementations differ in subtle ways).

        Tuning

        This issue has a mass of 45.

        We set useful threshold defaults for the languages we support but you may want to adjust these settings based on your project guidelines.

        The threshold configuration represents the minimum mass a code block must have to be analyzed for duplication. The lower the threshold, the more fine-grained the comparison.

        If the engine is too easily reporting duplication, try raising the threshold. If you suspect that the engine isn't catching enough duplication, try lowering the threshold. The best setting tends to differ from language to language.

        See codeclimate-duplication's documentation for more information about tuning the mass threshold in your .codeclimate.yml.

        Refactorings

        Further Reading

        Similar blocks of code found in 2 locations. Consider refactoring.
        Open

                elif self.mode == "u":
                    self.envelope, self.y_env, self.loc = _calc_envelope(
                        self.y, np.arange(len(self.y)), "u"
                    )
                    plt.title("Adjust the upper envelope.")
        Severity: Major
        Found in pysprint/mpl_tools/normalize.py and 1 other location - About 1 hr to fix
        pysprint/mpl_tools/normalize.py on lines 21..25

        Duplicated Code

        Duplicated code can lead to software that is hard to understand and difficult to change. The Don't Repeat Yourself (DRY) principle states:

        Every piece of knowledge must have a single, unambiguous, authoritative representation within a system.

        When you violate DRY, bugs and maintenance problems are sure to follow. Duplicated code has a tendency to both continue to replicate and also to diverge (leaving bugs as two similar implementations differ in subtle ways).

        Tuning

        This issue has a mass of 45.

        We set useful threshold defaults for the languages we support but you may want to adjust these settings based on your project guidelines.

        The threshold configuration represents the minimum mass a code block must have to be analyzed for duplication. The lower the threshold, the more fine-grained the comparison.

        If the engine is too easily reporting duplication, try raising the threshold. If you suspect that the engine isn't catching enough duplication, try lowering the threshold. The best setting tends to differ from language to language.

        See codeclimate-duplication's documentation for more information about tuning the mass threshold in your .codeclimate.yml.

        Refactorings

        Further Reading

        Identical blocks of code found in 2 locations. Consider refactoring.
        Open

            window = (np.sqrt(1 + chirp ** 2) * 8 * np.log(2)) / (pulse_width ** 2)
        Severity: Major
        Found in pysprint/core/_generator.py and 1 other location - About 1 hr to fix
        pysprint/core/_generator.py on lines 90..90

        Duplicated Code

        Duplicated code can lead to software that is hard to understand and difficult to change. The Don't Repeat Yourself (DRY) principle states:

        Every piece of knowledge must have a single, unambiguous, authoritative representation within a system.

        When you violate DRY, bugs and maintenance problems are sure to follow. Duplicated code has a tendency to both continue to replicate and also to diverge (leaving bugs as two similar implementations differ in subtle ways).

        Tuning

        This issue has a mass of 53.

        We set useful threshold defaults for the languages we support but you may want to adjust these settings based on your project guidelines.

        The threshold configuration represents the minimum mass a code block must have to be analyzed for duplication. The lower the threshold, the more fine-grained the comparison.

        If the engine is too easily reporting duplication, try raising the threshold. If you suspect that the engine isn't catching enough duplication, try lowering the threshold. The best setting tends to differ from language to language.

        See codeclimate-duplication's documentation for more information about tuning the mass threshold in your .codeclimate.yml.

        Refactorings

        Further Reading

        Function _parse_raw has 15 arguments (exceeds 8 allowed). Consider refactoring.
        Open

        def _parse_raw(
        Severity: Major
        Found in pysprint/core/io/_parser.py - About 1 hr to fix

          Function generator_wave has 14 arguments (exceeds 8 allowed). Consider refactoring.
          Open

          def generator_wave(
          Severity: Major
          Found in pysprint/core/_generator.py - About 1 hr to fix

            Function generator_freq has 14 arguments (exceeds 8 allowed). Consider refactoring.
            Open

            def generator_freq(
            Severity: Major
            Found in pysprint/core/_generator.py - About 1 hr to fix

              Function __init__ has 14 arguments (exceeds 8 allowed). Consider refactoring.
              Open

                  def __init__(
              Severity: Major
              Found in pysprint/core/methods/generator.py - About 1 hr to fix

                Function _calculate has 12 arguments (exceeds 8 allowed). Consider refactoring.
                Open

                    def _calculate(
                Severity: Major
                Found in pysprint/core/methods/wft.py - About 1 hr to fix

                  Function calculate has 12 arguments (exceeds 8 allowed). Consider refactoring.
                  Open

                      def calculate(
                  Severity: Major
                  Found in pysprint/core/methods/wft.py - About 1 hr to fix

                    Function cos_fit6 has 10 arguments (exceeds 8 allowed). Consider refactoring.
                    Open

                    def cos_fit6(x, c0, c1, b0, b1, b2, b3, b4, b5, b6):
                    Severity: Major
                    Found in pysprint/core/_functions.py - About 45 mins to fix

                      Identical blocks of code found in 2 locations. Consider refactoring.
                      Open

                              * np.cos(
                                  _disp(relom, GD=GD, GDD=GDD, TOD=TOD, FOD=FOD, QOD=QOD, SOD=SOD) + (omega * delay)
                      Severity: Minor
                      Found in pysprint/core/_generator.py and 1 other location - About 40 mins to fix
                      pysprint/core/_generator.py on lines 60..62

                      Duplicated Code

                      Duplicated code can lead to software that is hard to understand and difficult to change. The Don't Repeat Yourself (DRY) principle states:

                      Every piece of knowledge must have a single, unambiguous, authoritative representation within a system.

                      When you violate DRY, bugs and maintenance problems are sure to follow. Duplicated code has a tendency to both continue to replicate and also to diverge (leaving bugs as two similar implementations differ in subtle ways).

                      Tuning

                      This issue has a mass of 42.

                      We set useful threshold defaults for the languages we support but you may want to adjust these settings based on your project guidelines.

                      The threshold configuration represents the minimum mass a code block must have to be analyzed for duplication. The lower the threshold, the more fine-grained the comparison.

                      If the engine is too easily reporting duplication, try raising the threshold. If you suspect that the engine isn't catching enough duplication, try lowering the threshold. The best setting tends to differ from language to language.

                      See codeclimate-duplication's documentation for more information about tuning the mass threshold in your .codeclimate.yml.

                      Refactorings

                      Further Reading

                      Identical blocks of code found in 2 locations. Consider refactoring.
                      Open

                              + 2
                              * np.cos(
                                  _disp(relom, GD=GD, GDD=GDD, TOD=TOD, FOD=FOD, QOD=QOD, SOD=SOD) + (omega * delay)
                      Severity: Minor
                      Found in pysprint/core/_generator.py and 1 other location - About 40 mins to fix
                      pysprint/core/_generator.py on lines 101..102

                      Duplicated Code

                      Duplicated code can lead to software that is hard to understand and difficult to change. The Don't Repeat Yourself (DRY) principle states:

                      Every piece of knowledge must have a single, unambiguous, authoritative representation within a system.

                      When you violate DRY, bugs and maintenance problems are sure to follow. Duplicated code has a tendency to both continue to replicate and also to diverge (leaving bugs as two similar implementations differ in subtle ways).

                      Tuning

                      This issue has a mass of 42.

                      We set useful threshold defaults for the languages we support but you may want to adjust these settings based on your project guidelines.

                      The threshold configuration represents the minimum mass a code block must have to be analyzed for duplication. The lower the threshold, the more fine-grained the comparison.

                      If the engine is too easily reporting duplication, try raising the threshold. If you suspect that the engine isn't catching enough duplication, try lowering the threshold. The best setting tends to differ from language to language.

                      See codeclimate-duplication's documentation for more information about tuning the mass threshold in your .codeclimate.yml.

                      Refactorings

                      Further Reading

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