SpeciesFileGroup/taxonworks

# Be sure to restart your server (or console) when you modify this file.

Rails.application.config.after_initialize do

# Array of all ICZN and ICN TaxonNameClassification classes
  TAXON_NAME_CLASSIFICATION_CLASSES = TaxonNameClassification.descendants.freeze

# Array of all Latinized TaxonNameClassification classes, as Strings
LATINIZED_TAXON_NAME_CLASSIFICATION_NAMES = TaxonNameClassification::Latinized.descendants.collect { |d| d.to_s }.freeze

# Array of all ICZN TaxonNameClassification classes, as Strings
ICZN_TAXON_NAME_CLASSIFICATION_NAMES = TaxonNameClassification::Iczn.descendants.collect { |d| d.to_s }.freeze

# Array of all ICN TaxonNameClassifications classes, as Strings
ICN_TAXON_NAME_CLASSIFICATION_NAMES = TaxonNameClassification::Icn.descendants.collect { |d| d.to_s }.freeze

# Array of all ICNP TaxonNameClassifications classes, as Strings
ICNP_TAXON_NAME_CLASSIFICATION_NAMES = TaxonNameClassification::Icnp.descendants.collect { |d| d.to_s }.freeze

TAXON_NAME_CLASSIFICATION_GENDER_CLASSES = TaxonNameClassification::Latinized::Gender.descendants.freeze

# Array of all ICVCN TaxonNameClassifications classes, as Strings
ICVCN_TAXON_NAME_CLASSIFICATION_NAMES = TaxonNameClassification::Icvcn.descendants.collect { |d| d.to_s }.freeze

ICZN_TAXON_NAME_CLASSIFICATION_HASH = (ICZN_TAXON_NAME_CLASSIFICATION_NAMES + LATINIZED_TAXON_NAME_CLASSIFICATION_NAMES).inject({}) {
  |hsh, klass| hsh.merge(klass.constantize.name => klass)
}.freeze

ICN_TAXON_NAME_CLASSIFICATION_HASH = (ICN_TAXON_NAME_CLASSIFICATION_NAMES + LATINIZED_TAXON_NAME_CLASSIFICATION_NAMES).inject({}) {
  |hsh, klass| hsh.merge(klass.constantize.name => klass)
}.freeze

ICNP_TAXON_NAME_CLASSIFICATION_HASH = (ICNP_TAXON_NAME_CLASSIFICATION_NAMES + LATINIZED_TAXON_NAME_CLASSIFICATION_NAMES).inject({}) {
  |hsh, klass| hsh.merge(klass.constantize.name => klass)
}.freeze

ICVCN_TAXON_NAME_CLASSIFICATION_HASH = (ICVCN_TAXON_NAME_CLASSIFICATION_NAMES + LATINIZED_TAXON_NAME_CLASSIFICATION_NAMES).inject({}) {
  |hsh, klass| hsh.merge(klass.constantize.name => klass)
}.freeze

# Array of all TaxonNameClassifications classes, as Strings
TAXON_NAME_CLASSIFICATION_NAMES = (ICN_TAXON_NAME_CLASSIFICATION_NAMES + ICVCN_TAXON_NAME_CLASSIFICATION_NAMES + ICNP_TAXON_NAME_CLASSIFICATION_NAMES + ICZN_TAXON_NAME_CLASSIFICATION_NAMES + LATINIZED_TAXON_NAME_CLASSIFICATION_NAMES).freeze

# Array of all Unavailable and Invalid TaxonNameClassifications classes, as Strings
TAXON_NAME_CLASS_NAMES_UNAVAILABLE_AND_INVALID = [
  TaxonNameClassification::Iczn::Unavailable,
  TaxonNameClassification::Iczn::Unavailable.descendants,
  TaxonNameClassification::Iczn::Available::Invalid,
  TaxonNameClassification::Iczn::Available::Invalid.descendants,
  TaxonNameClassification::Iczn::CollectiveGroup,
  TaxonNameClassification::Iczn::Fossil::Ichnotaxon,
  TaxonNameClassification::Icn::NotEffectivelyPublished,
  TaxonNameClassification::Icn::NotEffectivelyPublished.descendants,
  TaxonNameClassification::Icn::EffectivelyPublished::InvalidlyPublished,
  TaxonNameClassification::Icn::EffectivelyPublished::InvalidlyPublished.descendants,
  TaxonNameClassification::Icn::EffectivelyPublished::ValidlyPublished::Illegitimate,
  TaxonNameClassification::Icn::EffectivelyPublished::ValidlyPublished::Illegitimate.descendants,
  TaxonNameClassification::Icnp::NotEffectivelyPublished,
  TaxonNameClassification::Icnp::NotEffectivelyPublished.descendants,
  TaxonNameClassification::Icnp::EffectivelyPublished::InvalidlyPublished,
  TaxonNameClassification::Icnp::EffectivelyPublished::InvalidlyPublished.descendants,
  TaxonNameClassification::Icnp::EffectivelyPublished::ValidlyPublished::Illegitimate,
  TaxonNameClassification::Icnp::EffectivelyPublished::ValidlyPublished::Illegitimate.descendants,
  TaxonNameClassification::Icvcn::Invalid,
  TaxonNameClassification::Icvcn::Invalid.descendants,
  TaxonNameClassification::Icvcn::Valid::Unaccepted
].flatten.map(&:to_s).freeze

# Array of all Unavailable and Invalid TaxonNameClassifications classes, as Strings
TAXON_NAME_CLASS_NAMES_UNAVAILABLE = [
  TaxonNameClassification::Iczn::Unavailable,
  TaxonNameClassification::Iczn::Unavailable.descendants,
  TaxonNameClassification::Iczn::CollectiveGroup,
  TaxonNameClassification::Iczn::Fossil::Ichnotaxon,
  TaxonNameClassification::Icn::NotEffectivelyPublished,
  TaxonNameClassification::Icn::NotEffectivelyPublished.descendants,
  TaxonNameClassification::Icn::EffectivelyPublished::InvalidlyPublished,
  TaxonNameClassification::Icn::EffectivelyPublished::InvalidlyPublished.descendants,
  TaxonNameClassification::Icnp::NotEffectivelyPublished,
  TaxonNameClassification::Icnp::NotEffectivelyPublished.descendants,
  TaxonNameClassification::Icnp::EffectivelyPublished::InvalidlyPublished,
  TaxonNameClassification::Icnp::EffectivelyPublished::InvalidlyPublished.descendants
].flatten.map(&:to_s).freeze


TAXON_NAME_CLASS_NAMES_VALID = [
  TaxonNameClassification::Iczn::Available::Valid,
  TaxonNameClassification::Iczn::Available::Valid.descendants,
  TaxonNameClassification::Icn::EffectivelyPublished::ValidlyPublished::Legitimate::Correct,
  TaxonNameClassification::Icn::EffectivelyPublished::ValidlyPublished::Legitimate::Correct.descendants,
  TaxonNameClassification::Icvcn::Valid::Accepted,
  TaxonNameClassification::Icvcn::Valid::Accepted.descendants,
  TaxonNameClassification::Icnp::EffectivelyPublished::ValidlyPublished::Legitimate::Correct,
  TaxonNameClassification::Icnp::EffectivelyPublished::ValidlyPublished::Legitimate::Correct.descendants
].flatten.map(&:to_s).freeze

EXCEPTED_FORM_TAXON_NAME_CLASSIFICATIONS = [
    TaxonNameClassification::Iczn::Unavailable::NotLatin,
    TaxonNameClassification::Iczn::Unavailable::LessThanTwoLetters,
    TaxonNameClassification::Iczn::Unavailable::NotLatinizedAfter1899,
    TaxonNameClassification::Iczn::Unavailable::NotLatinizedBefore1900AndNotAccepted,
    TaxonNameClassification::Iczn::Unavailable::NonBinominal,
    TaxonNameClassification::Iczn::Unavailable::NonBinominal.descendants,
    TaxonNameClassification::Iczn::Unavailable::NomenNudum,
    TaxonNameClassification::Iczn::Unavailable::NomenNudum.descendants,
    TaxonNameClassification::Iczn::Unavailable::Excluded,
    TaxonNameClassification::Iczn::Unavailable::Excluded.descendants,
    TaxonNameClassification::Icn::EffectivelyPublished::InvalidlyPublished::NotLatin
].flatten.map(&:to_s).freeze


# JSON supporting
module TaxonNameClassificationsHelper

  # @return [Hash]
  def self.collection(classifications)
    classifications.select { |s| s.assignable }.inject({}) { |hsh, c|
      hsh.merge!(c.name => attributes(c))
    }
  end

  # @return [Hash]
  def self.attributes(classification)
    return {
      name: classification.label,
      type: classification.to_s,
      applicable_ranks: classification.applicable_ranks
    }
  end

  # @return [Hash]
  def self.descendants_collection(base_classification)
    collection(base_classification.descendants)
  end
end


TAXON_NAME_CLASSIFICATION_JSON = {
    iczn: {
    tree: ApplicationEnumeration.nested_subclasses(TaxonNameClassification::Iczn),
    all: TaxonNameClassificationsHelper::descendants_collection(TaxonNameClassification::Iczn),
    common: TaxonNameClassificationsHelper.collection([
      TaxonNameClassification::Iczn::Unavailable,
      TaxonNameClassification::Iczn::Unavailable::NomenNudum,
      TaxonNameClassification::Iczn::Available::Valid::NomenDubium,
      TaxonNameClassification::Iczn::Fossil
    ])
  },
    icn: {
    tree: ApplicationEnumeration.nested_subclasses(TaxonNameClassification::Icn),
    all: TaxonNameClassificationsHelper::descendants_collection(TaxonNameClassification::Icn),
    common: TaxonNameClassificationsHelper.collection([
      TaxonNameClassification::Icn::EffectivelyPublished::InvalidlyPublished,
      TaxonNameClassification::Icn::EffectivelyPublished::InvalidlyPublished::NomenNudum,
      TaxonNameClassification::Icn::Fossil
    ])
  },
    icnp: {
    tree: ApplicationEnumeration.nested_subclasses(TaxonNameClassification::Icnp),
    all: TaxonNameClassificationsHelper::descendants_collection(TaxonNameClassification::Icnp),
    common: TaxonNameClassificationsHelper.collection([
      TaxonNameClassification::Icnp::EffectivelyPublished::ValidlyPublished::Legitimate::Candidatus
    ])
  },
    icvcn: {
    tree: ApplicationEnumeration.nested_subclasses(TaxonNameClassification::Icvcn),
    all: TaxonNameClassificationsHelper::descendants_collection(TaxonNameClassification::Icvcn),
    common: TaxonNameClassificationsHelper.collection([

    ])
  },
    latinized: {
    tree: ApplicationEnumeration.nested_subclasses(TaxonNameClassification::Latinized),
    all: TaxonNameClassificationsHelper::descendants_collection(TaxonNameClassification::Latinized),
    common: TaxonNameClassificationsHelper.collection([
    ])
  }
}.freeze
end