Showing 165 of 167 total issues
Unexpected spaces around keyword / parameter equals Open
def write_header(self, copy_header = None, header = b'', reference_names = None, reference_lengths = None):
- Read upRead up
- Exclude checks
Don't use spaces around the '=' sign in function arguments.
Don't use spaces around the '=' sign when used to indicate a
keyword argument or a default parameter value, except when
using a type annotation.
Okay: def complex(real, imag=0.0):
Okay: return magic(r=real, i=imag)
Okay: boolean(a == b)
Okay: boolean(a != b)
Okay: boolean(a <= b)
Okay: boolean(a >= b)
Okay: def foo(arg: int = 42):
Okay: async def foo(arg: int = 42):
E251: def complex(real, imag = 0.0):
E251: return magic(r = real, i = imag)
E252: def complex(real, image: float=0.0):
Unexpected spaces around keyword / parameter equals Open
def write_header(self, copy_header = None, header = b'', reference_names = None, reference_lengths = None):
- Read upRead up
- Exclude checks
Don't use spaces around the '=' sign in function arguments.
Don't use spaces around the '=' sign when used to indicate a
keyword argument or a default parameter value, except when
using a type annotation.
Okay: def complex(real, imag=0.0):
Okay: return magic(r=real, i=imag)
Okay: boolean(a == b)
Okay: boolean(a != b)
Okay: boolean(a <= b)
Okay: boolean(a >= b)
Okay: def foo(arg: int = 42):
Okay: async def foo(arg: int = 42):
E251: def complex(real, imag = 0.0):
E251: return magic(r = real, i = imag)
E252: def complex(real, image: float=0.0):
Continuation line under-indented for visual indent Open
header,
- Read upRead up
- Exclude checks
Continuation lines indentation.
Continuation lines should align wrapped elements either vertically
using Python's implicit line joining inside parentheses, brackets
and braces, or using a hanging indent.
When using a hanging indent these considerations should be applied:
- there should be no arguments on the first line, and
- further indentation should be used to clearly distinguish itself
as a continuation line.
Okay: a = (\n)
E123: a = (\n )
Okay: a = (\n 42)
E121: a = (\n 42)
E122: a = (\n42)
E123: a = (\n 42\n )
E124: a = (24,\n 42\n)
E125: if (\n b):\n pass
E126: a = (\n 42)
E127: a = (24,\n 42)
E128: a = (24,\n 42)
E129: if (a or\n b):\n pass
E131: a = (\n 42\n 24)
Line break after binary operator Open
hash(self.reference_name) ^
- Read upRead up
- Exclude checks
Avoid breaks after binary operators.
The preferred place to break around a binary operator is before the
operator, not after it.
W504: (width == 0 +\n height == 0)
W504: (width == 0 and\n height == 0)
W504: var = (1 &\n ~2)
Okay: foo(\n -x)
Okay: foo(x\n [])
Okay: x = '''\n''' + ''
Okay: x = '' + '''\n'''
Okay: foo(x,\n -y)
Okay: foo(x, # comment\n -y)
The following should be W504 but unary_context is tricky with these
Okay: var = (1 /\n -2)
Okay: var = (1 +\n -1 +\n -2)
Blank line contains whitespace Open
- Read upRead up
- Exclude checks
Trailing whitespace is superfluous.
The warning returned varies on whether the line itself is blank,
for easier filtering for those who want to indent their blank lines.
Okay: spam(1)\n#
W291: spam(1) \n#
W293: class Foo(object):\n \n bang = 12
Unexpected spaces around keyword / parameter equals Open
def _cross_check_header_refs(reads, header="", referencenames = None, referencelengths = None):
- Read upRead up
- Exclude checks
Don't use spaces around the '=' sign in function arguments.
Don't use spaces around the '=' sign when used to indicate a
keyword argument or a default parameter value, except when
using a type annotation.
Okay: def complex(real, imag=0.0):
Okay: return magic(r=real, i=imag)
Okay: boolean(a == b)
Okay: boolean(a != b)
Okay: boolean(a <= b)
Okay: boolean(a >= b)
Okay: def foo(arg: int = 42):
Okay: async def foo(arg: int = 42):
E251: def complex(real, imag = 0.0):
E251: return magic(r = real, i = imag)
E252: def complex(real, image: float=0.0):
Trailing whitespace Open
else:
- Read upRead up
- Exclude checks
Trailing whitespace is superfluous.
The warning returned varies on whether the line itself is blank,
for easier filtering for those who want to indent their blank lines.
Okay: spam(1)\n#
W291: spam(1) \n#
W293: class Foo(object):\n \n bang = 12
Unexpected spaces around keyword / parameter equals Open
self.write_header(copy_header = copy_header, header = header,
- Read upRead up
- Exclude checks
Don't use spaces around the '=' sign in function arguments.
Don't use spaces around the '=' sign when used to indicate a
keyword argument or a default parameter value, except when
using a type annotation.
Okay: def complex(real, imag=0.0):
Okay: return magic(r=real, i=imag)
Okay: boolean(a == b)
Okay: boolean(a != b)
Okay: boolean(a <= b)
Okay: boolean(a >= b)
Okay: def foo(arg: int = 42):
Okay: async def foo(arg: int = 42):
E251: def complex(real, imag = 0.0):
E251: return magic(r = real, i = imag)
E252: def complex(real, image: float=0.0):
Unexpected spaces around keyword / parameter equals Open
reference_names = reference_names,
- Read upRead up
- Exclude checks
Don't use spaces around the '=' sign in function arguments.
Don't use spaces around the '=' sign when used to indicate a
keyword argument or a default parameter value, except when
using a type annotation.
Okay: def complex(real, imag=0.0):
Okay: return magic(r=real, i=imag)
Okay: boolean(a == b)
Okay: boolean(a != b)
Okay: boolean(a <= b)
Okay: boolean(a >= b)
Okay: def foo(arg: int = 42):
Okay: async def foo(arg: int = 42):
E251: def complex(real, imag = 0.0):
E251: return magic(r = real, i = imag)
E252: def complex(real, image: float=0.0):
Unexpected spaces around keyword / parameter equals Open
copy_header = None, header = b'', reference_names = None, reference_lengths = None):
- Read upRead up
- Exclude checks
Don't use spaces around the '=' sign in function arguments.
Don't use spaces around the '=' sign when used to indicate a
keyword argument or a default parameter value, except when
using a type annotation.
Okay: def complex(real, imag=0.0):
Okay: return magic(r=real, i=imag)
Okay: boolean(a == b)
Okay: boolean(a != b)
Okay: boolean(a <= b)
Okay: boolean(a >= b)
Okay: def foo(arg: int = 42):
Okay: async def foo(arg: int = 42):
E251: def complex(real, imag = 0.0):
E251: return magic(r = real, i = imag)
E252: def complex(real, image: float=0.0):
Unexpected spaces around keyword / parameter equals Open
super(BamWriter, self).__init__(filepath_or_object, mode=mode, compresslevel = compresslevel)
- Read upRead up
- Exclude checks
Don't use spaces around the '=' sign in function arguments.
Don't use spaces around the '=' sign when used to indicate a
keyword argument or a default parameter value, except when
using a type annotation.
Okay: def complex(real, imag=0.0):
Okay: return magic(r=real, i=imag)
Okay: boolean(a == b)
Okay: boolean(a != b)
Okay: boolean(a <= b)
Okay: boolean(a >= b)
Okay: def foo(arg: int = 42):
Okay: async def foo(arg: int = 42):
E251: def complex(real, imag = 0.0):
E251: return magic(r = real, i = imag)
E252: def complex(real, image: float=0.0):
Unexpected spaces around keyword / parameter equals Open
def write_header(self, copy_header = None, header = b'', reference_names = None, reference_lengths = None):
- Read upRead up
- Exclude checks
Don't use spaces around the '=' sign in function arguments.
Don't use spaces around the '=' sign when used to indicate a
keyword argument or a default parameter value, except when
using a type annotation.
Okay: def complex(real, imag=0.0):
Okay: return magic(r=real, i=imag)
Okay: boolean(a == b)
Okay: boolean(a != b)
Okay: boolean(a <= b)
Okay: boolean(a >= b)
Okay: def foo(arg: int = 42):
Okay: async def foo(arg: int = 42):
E251: def complex(real, imag = 0.0):
E251: return magic(r = real, i = imag)
E252: def complex(real, image: float=0.0):
Unexpected spaces around keyword / parameter equals Open
reference_lengths = reference_lengths)
- Read upRead up
- Exclude checks
Don't use spaces around the '=' sign in function arguments.
Don't use spaces around the '=' sign when used to indicate a
keyword argument or a default parameter value, except when
using a type annotation.
Okay: def complex(real, imag=0.0):
Okay: return magic(r=real, i=imag)
Okay: boolean(a == b)
Okay: boolean(a != b)
Okay: boolean(a <= b)
Okay: boolean(a >= b)
Okay: def foo(arg: int = 42):
Okay: async def foo(arg: int = 42):
E251: def complex(real, imag = 0.0):
E251: return magic(r = real, i = imag)
E252: def complex(real, image: float=0.0):
Continuation line under-indented for visual indent Open
filename=None, duplicate_filehandle=None, ignore_truncation=False):
- Read upRead up
- Exclude checks
Continuation lines indentation.
Continuation lines should align wrapped elements either vertically
using Python's implicit line joining inside parentheses, brackets
and braces, or using a hanging indent.
When using a hanging indent these considerations should be applied:
- there should be no arguments on the first line, and
- further indentation should be used to clearly distinguish itself
as a continuation line.
Okay: a = (\n)
E123: a = (\n )
Okay: a = (\n 42)
E121: a = (\n 42)
E122: a = (\n42)
E123: a = (\n 42\n )
E124: a = (24,\n 42\n)
E125: if (\n b):\n pass
E126: a = (\n 42)
E127: a = (24,\n 42)
E128: a = (24,\n 42)
E129: if (a or\n b):\n pass
E131: a = (\n 42\n 24)
Unexpected spaces around keyword / parameter equals Open
def write_header(self, copy_header = None, header = b'', reference_names = None, reference_lengths = None):
- Read upRead up
- Exclude checks
Don't use spaces around the '=' sign in function arguments.
Don't use spaces around the '=' sign when used to indicate a
keyword argument or a default parameter value, except when
using a type annotation.
Okay: def complex(real, imag=0.0):
Okay: return magic(r=real, i=imag)
Okay: boolean(a == b)
Okay: boolean(a != b)
Okay: boolean(a <= b)
Okay: boolean(a >= b)
Okay: def foo(arg: int = 42):
Okay: async def foo(arg: int = 42):
E251: def complex(real, imag = 0.0):
E251: return magic(r = real, i = imag)
E252: def complex(real, image: float=0.0):
Trailing whitespace Open
module. BioPython BGZF is now under a 3-clause BSD license. The same license
- Read upRead up
- Exclude checks
Trailing whitespace is superfluous.
The warning returned varies on whether the line itself is blank,
for easier filtering for those who want to indent their blank lines.
Okay: spam(1)\n#
W291: spam(1) \n#
W293: class Foo(object):\n \n bang = 12
Continuation line under-indented for visual indent Open
'filename': locals()['filename'], 'ignore_truncation': locals()['ignore_truncation'],
- Read upRead up
- Exclude checks
Continuation lines indentation.
Continuation lines should align wrapped elements either vertically
using Python's implicit line joining inside parentheses, brackets
and braces, or using a hanging indent.
When using a hanging indent these considerations should be applied:
- there should be no arguments on the first line, and
- further indentation should be used to clearly distinguish itself
as a continuation line.
Okay: a = (\n)
E123: a = (\n )
Okay: a = (\n 42)
E121: a = (\n 42)
E122: a = (\n42)
E123: a = (\n 42\n )
E124: a = (24,\n 42\n)
E125: if (\n b):\n pass
E126: a = (\n 42)
E127: a = (24,\n 42)
E128: a = (24,\n 42)
E129: if (a or\n b):\n pass
E131: a = (\n 42\n 24)
Unexpected spaces around keyword / parameter equals Open
super(BamWriter, self).__init__(filepath_or_object, mode=mode, compresslevel = compresslevel)
- Read upRead up
- Exclude checks
Don't use spaces around the '=' sign in function arguments.
Don't use spaces around the '=' sign when used to indicate a
keyword argument or a default parameter value, except when
using a type annotation.
Okay: def complex(real, imag=0.0):
Okay: return magic(r=real, i=imag)
Okay: boolean(a == b)
Okay: boolean(a != b)
Okay: boolean(a <= b)
Okay: boolean(a >= b)
Okay: def foo(arg: int = 42):
Okay: async def foo(arg: int = 42):
E251: def complex(real, imag = 0.0):
E251: return magic(r = real, i = imag)
E252: def complex(real, image: float=0.0):
Unexpected spaces around keyword / parameter equals Open
self.write_header(copy_header = copy_header, header = header,
- Read upRead up
- Exclude checks
Don't use spaces around the '=' sign in function arguments.
Don't use spaces around the '=' sign when used to indicate a
keyword argument or a default parameter value, except when
using a type annotation.
Okay: def complex(real, imag=0.0):
Okay: return magic(r=real, i=imag)
Okay: boolean(a == b)
Okay: boolean(a != b)
Okay: boolean(a <= b)
Okay: boolean(a >= b)
Okay: def foo(arg: int = 42):
Okay: async def foo(arg: int = 42):
E251: def complex(real, imag = 0.0):
E251: return magic(r = real, i = imag)
E252: def complex(real, image: float=0.0):
Line break after binary operator Open
hash(self.read_name) ^
- Read upRead up
- Exclude checks
Avoid breaks after binary operators.
The preferred place to break around a binary operator is before the
operator, not after it.
W504: (width == 0 +\n height == 0)
W504: (width == 0 and\n height == 0)
W504: var = (1 &\n ~2)
Okay: foo(\n -x)
Okay: foo(x\n [])
Okay: x = '''\n''' + ''
Okay: x = '' + '''\n'''
Okay: foo(x,\n -y)
Okay: foo(x, # comment\n -y)
The following should be W504 but unary_context is tricky with these
Okay: var = (1 /\n -2)
Okay: var = (1 +\n -1 +\n -2)