| .codeclimate.yml | |
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| .github/workflows/build.yml | |
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| .gitignore | |
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| .gitmodules | |
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| .rubocop.yml | |
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| Gemfile | |
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| LICENSE | |
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| README.md | |
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| Rakefile | |
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| bin/miga | |
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| bin/miga-env | |
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| book.json | |
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| conda.yml | |
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| lib/miga.rb | 5 | A 0 mins | A 100% |
| lib/miga/_data/aai-intax-blast.tsv.gz | |
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| lib/miga/_data/aai-intax-diamond.tsv.gz | |
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| lib/miga/_data/aai-intax.blast.tsv.gz | |
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| lib/miga/_data/aai-intax.diamond.tsv.gz | |
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| lib/miga/_data/aai-novel-blast.tsv.gz | |
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| lib/miga/_data/aai-novel-diamond.tsv.gz | |
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| lib/miga/_data/aai-novel.blast.tsv.gz | |
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| lib/miga/_data/aai-novel.diamond.tsv.gz | |
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| lib/miga/cli.rb | 128 | A 1 hr |
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| lib/miga/cli/action.rb | 38 | A 0 mins |
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| lib/miga/cli/action/about.rb | 38 | A 1 hr |
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| lib/miga/cli/action/add.rb | 157 | B 6 hrs |
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| lib/miga/cli/action/add_result.rb | 39 | A 25 mins |
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| lib/miga/cli/action/archive.rb | 81 | A 35 mins |
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| lib/miga/cli/action/browse.rb | 188 | A 55 mins |
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| lib/miga/cli/action/browse/about.html | |
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| lib/miga/cli/action/browse/dataset.html | |
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| lib/miga/cli/action/browse/dataset_menu_item.html | |
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| lib/miga/cli/action/browse/datasets.html | |
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| lib/miga/cli/action/browse/favicon-32.png | |
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| lib/miga/cli/action/browse/index.html | |
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| lib/miga/cli/action/browse/layout.html | |
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| lib/miga/cli/action/browse/redirect.html | |
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| lib/miga/cli/action/browse/style.css | |
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| lib/miga/cli/action/browse/summary.html | |
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| lib/miga/cli/action/classify_wf.rb | 90 | A 3 hrs |
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| lib/miga/cli/action/console.rb | 12 | A 0 mins |
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| lib/miga/cli/action/daemon.rb | 82 | A 2 hrs |
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| lib/miga/cli/action/date.rb | 11 | A 0 mins |
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| lib/miga/cli/action/db.rb | 228 | B 4 hrs |
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| lib/miga/cli/action/derep_wf.rb | 92 | A 1 hr |
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| lib/miga/cli/action/doctor.rb | 59 | A 0 mins |
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| lib/miga/cli/action/doctor/base.rb | 86 | A 3 hrs |
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| lib/miga/cli/action/doctor/databases.rb | 32 | A 25 mins |
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| lib/miga/cli/action/doctor/distances.rb | 112 | C 1 day |
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| lib/miga/cli/action/doctor/operations.rb | 135 | C 7 hrs |
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