Showing 1,586 of 1,600 total issues
Avoid comma after the last item of a hash. Open
tax_distributions: :tax_dist,
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This cop checks for trailing comma in array and hash literals.
Example: EnforcedStyleForMultiline: consistent_comma
# bad
a = [1, 2,]
# good
a = [
1, 2,
3,
]
# good
a = [
1,
2,
]
Example: EnforcedStyleForMultiline: comma
# bad
a = [1, 2,]
# good
a = [
1,
2,
]
Example: EnforcedStyleForMultiline: no_comma (default)
# bad
a = [1, 2,]
# good
a = [
1,
2
]
Useless assignment to variable - p
. Open
p = create_project(:assembly, {}, run_mytaxa_scan: cli[:mytaxa])
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This cop checks for every useless assignment to local variable in every
scope.
The basic idea for this cop was from the warning of ruby -cw
:
assigned but unused variable - foo
Currently this cop has advanced logic that detects unreferenced reassignments and properly handles varied cases such as branch, loop, rescue, ensure, etc.
Example:
# bad
def some_method
some_var = 1
do_something
end
Example:
# good
def some_method
some_var = 1
do_something(some_var)
end
Missing top-level class documentation comment. Open
class MiGA::Cli::Action::IndexWf < MiGA::Cli::Action
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This cop checks for missing top-level documentation of classes and modules. Classes with no body are exempt from the check and so are namespace modules - modules that have nothing in their bodies except classes, other modules, or constant definitions.
The documentation requirement is annulled if the class or module has a "#:nodoc:" comment next to it. Likewise, "#:nodoc: all" does the same for all its children.
Example:
# bad
class Person
# ...
end
# good
# Description/Explanation of Person class
class Person
# ...
end
Unused method argument - d
. If it's necessary, use _
or _d
as an argument name to indicate that it won't be used. Open
def query_probability_distributions(d, cr)
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This cop checks for unused method arguments.
Example:
# bad
def some_method(used, unused, _unused_but_allowed)
puts used
end
Example:
# good
def some_method(used, _unused, _unused_but_allowed)
puts used
end
Prefer Date or Time over DateTime. Open
d && DateTime.parse(d.metadata[:updated]) < cli[:updated_before]
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This cop checks for uses of DateTime
that should be replaced by
Date
or Time
.
Example:
# bad - uses `DateTime` for current time
DateTime.now
# good - uses `Time` for current time
Time.now
# bad - uses `DateTime` for modern date
DateTime.iso8601('2016-06-29')
# good - uses `Date` for modern date
Date.iso8601('2016-06-29')
# good - uses `DateTime` with start argument for historical date
DateTime.iso8601('1751-04-23', Date::ENGLAND)
Prefer single-quoted strings when you don't need string interpolation or special symbols. Open
"{{key}}={{value}}"
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Checks if uses of quotes match the configured preference.
Example: EnforcedStyle: single_quotes (default)
# bad
"No special symbols"
"No string interpolation"
"Just text"
# good
'No special symbols'
'No string interpolation'
'Just text'
"Wait! What's #{this}!"
Example: EnforcedStyle: double_quotes
# bad
'Just some text'
'No special chars or interpolation'
# good
"Just some text"
"No special chars or interpolation"
"Every string in #{project} uses double_quotes"
Use next
to skip iteration. Open
unless ok
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Use next
to skip iteration instead of a condition at the end.
Example: EnforcedStyle: skipmodifierifs (default)
# bad
[1, 2].each do |a|
if a == 1
puts a
end
end
# good
[1, 2].each do |a|
next unless a == 1
puts a
end
# good
[1, 2].each do |o|
puts o unless o == 1
end
Example: EnforcedStyle: always
# With `always` all conditions at the end of an iteration needs to be
# replaced by next - with `skip_modifier_ifs` the modifier if like
# this one are ignored: `[1, 2].each { |a| return 'yes' if a == 1 }`
# bad
[1, 2].each do |o|
puts o unless o == 1
end
# bad
[1, 2].each do |a|
if a == 1
puts a
end
end
# good
[1, 2].each do |a|
next unless a == 1
puts a
end
Use i.zero?
instead of i == 0
. Open
cli.advance('Datasets:', k, n, false) if i == 0
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This cop checks for usage of comparison operators (==
,
>
, <
) to test numbers as zero, positive, or negative.
These can be replaced by their respective predicate methods.
The cop can also be configured to do the reverse.
The cop disregards #nonzero?
as it its value is truthy or falsey,
but not true
and false
, and thus not always interchangeable with
!= 0
.
The cop ignores comparisons to global variables, since they are often
populated with objects which can be compared with integers, but are
not themselves Interger
polymorphic.
Example: EnforcedStyle: predicate (default)
# bad
foo == 0
0 > foo
bar.baz > 0
# good
foo.zero?
foo.negative?
bar.baz.positive?
Example: EnforcedStyle: comparison
# bad
foo.zero?
foo.negative?
bar.baz.positive?
# good
foo == 0
0 > foo
bar.baz > 0
Missing top-level class documentation comment. Open
class MiGA::Cli::Action::New < MiGA::Cli::Action
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This cop checks for missing top-level documentation of classes and modules. Classes with no body are exempt from the check and so are namespace modules - modules that have nothing in their bodies except classes, other modules, or constant definitions.
The documentation requirement is annulled if the class or module has a "#:nodoc:" comment next to it. Likewise, "#:nodoc: all" does the same for all its children.
Example:
# bad
class Person
# ...
end
# good
# Description/Explanation of Person class
class Person
# ...
end
Missing top-level class documentation comment. Open
class MiGA::Cli::Action::NcbiGet < MiGA::Cli::Action
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This cop checks for missing top-level documentation of classes and modules. Classes with no body are exempt from the check and so are namespace modules - modules that have nothing in their bodies except classes, other modules, or constant definitions.
The documentation requirement is annulled if the class or module has a "#:nodoc:" comment next to it. Likewise, "#:nodoc: all" does the same for all its children.
Example:
# bad
class Person
# ...
end
# good
# Description/Explanation of Person class
class Person
# ...
end
Avoid comma after the last item of a hash. Open
tax_dist: 'Estimate distributions of distance by taxonomy',
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This cop checks for trailing comma in array and hash literals.
Example: EnforcedStyleForMultiline: consistent_comma
# bad
a = [1, 2,]
# good
a = [
1, 2,
3,
]
# good
a = [
1,
2,
]
Example: EnforcedStyleForMultiline: comma
# bad
a = [1, 2,]
# good
a = [
1,
2,
]
Example: EnforcedStyleForMultiline: no_comma (default)
# bad
a = [1, 2,]
# good
a = [
1,
2
]
Missing magic comment # frozen_string_literal: true
. Open
# @package MiGA
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This cop is designed to help upgrade to Ruby 3.0. It will add the
comment # frozen_string_literal: true
to the top of files to
enable frozen string literals. Frozen string literals may be default
in Ruby 3.0. The comment will be added below a shebang and encoding
comment. The frozen string literal comment is only valid in Ruby 2.3+.
Example: EnforcedStyle: when_needed (default)
# The `when_needed` style will add the frozen string literal comment
# to files only when the `TargetRubyVersion` is set to 2.3+.
# bad
module Foo
# ...
end
# good
# frozen_string_literal: true
module Foo
# ...
end
Example: EnforcedStyle: always
# The `always` style will always add the frozen string literal comment
# to a file, regardless of the Ruby version or if `freeze` or `<<` are
# called on a string literal.
# bad
module Bar
# ...
end
# good
# frozen_string_literal: true
module Bar
# ...
end
Example: EnforcedStyle: never
# The `never` will enforce that the frozen string literal comment does
# not exist in a file.
# bad
# frozen_string_literal: true
module Baz
# ...
end
# good
module Baz
# ...
end
Missing top-level class documentation comment. Open
class MiGA::Cli::Action::GtdbGet < MiGA::Cli::Action
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This cop checks for missing top-level documentation of classes and modules. Classes with no body are exempt from the check and so are namespace modules - modules that have nothing in their bodies except classes, other modules, or constant definitions.
The documentation requirement is annulled if the class or module has a "#:nodoc:" comment next to it. Likewise, "#:nodoc: all" does the same for all its children.
Example:
# bad
class Person
# ...
end
# good
# Description/Explanation of Person class
class Person
# ...
end
Missing magic comment # frozen_string_literal: true
. Open
# @package MiGA
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This cop is designed to help upgrade to Ruby 3.0. It will add the
comment # frozen_string_literal: true
to the top of files to
enable frozen string literals. Frozen string literals may be default
in Ruby 3.0. The comment will be added below a shebang and encoding
comment. The frozen string literal comment is only valid in Ruby 2.3+.
Example: EnforcedStyle: when_needed (default)
# The `when_needed` style will add the frozen string literal comment
# to files only when the `TargetRubyVersion` is set to 2.3+.
# bad
module Foo
# ...
end
# good
# frozen_string_literal: true
module Foo
# ...
end
Example: EnforcedStyle: always
# The `always` style will always add the frozen string literal comment
# to a file, regardless of the Ruby version or if `freeze` or `<<` are
# called on a string literal.
# bad
module Bar
# ...
end
# good
# frozen_string_literal: true
module Bar
# ...
end
Example: EnforcedStyle: never
# The `never` will enforce that the frozen string literal comment does
# not exist in a file.
# bad
# frozen_string_literal: true
module Baz
# ...
end
# good
module Baz
# ...
end
Use ||
instead of or
. Open
if cr.nil? or cr.empty?
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This cop checks for uses of and
and or
, and suggests using &&
and
|| instead
. It can be configured to check only in conditions, or in
all contexts.
Example: EnforcedStyle: always (default)
# bad
foo.save and return
# bad
if foo and bar
end
# good
foo.save && return
# good
if foo && bar
end
Example: EnforcedStyle: conditionals
# bad
if foo and bar
end
# good
foo.save && return
# good
foo.save and return
# good
if foo && bar
end
Omit parentheses for ternary conditions. Open
(@@TASK_DESC[task] =~ /\(alias: .*\)\./) ?
@@TASK_DESC[task].sub(/\)\.$/, ", #{nick}).") :
@@TASK_DESC[task].sub(/\.$/, " (alias: #{nick}).")
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This cop checks for the presence of parentheses around ternary
conditions. It is configurable to enforce inclusion or omission of
parentheses using EnforcedStyle
. Omission is only enforced when
removing the parentheses won't cause a different behavior.
Example: EnforcedStyle: requirenoparentheses (default)
# bad
foo = (bar?) ? a : b
foo = (bar.baz?) ? a : b
foo = (bar && baz) ? a : b
# good
foo = bar? ? a : b
foo = bar.baz? ? a : b
foo = bar && baz ? a : b
Example: EnforcedStyle: require_parentheses
# bad
foo = bar? ? a : b
foo = bar.baz? ? a : b
foo = bar && baz ? a : b
# good
foo = (bar?) ? a : b
foo = (bar.baz?) ? a : b
foo = (bar && baz) ? a : b
Example: EnforcedStyle: requireparentheseswhen_complex
# bad
foo = (bar?) ? a : b
foo = (bar.baz?) ? a : b
foo = bar && baz ? a : b
# good
foo = bar? ? a : b
foo = bar.baz? ? a : b
foo = (bar && baz) ? a : b
Missing top-level class documentation comment. Open
class MiGA::Cli::Action::Files < MiGA::Cli::Action
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This cop checks for missing top-level documentation of classes and modules. Classes with no body are exempt from the check and so are namespace modules - modules that have nothing in their bodies except classes, other modules, or constant definitions.
The documentation requirement is annulled if the class or module has a "#:nodoc:" comment next to it. Likewise, "#:nodoc: all" does the same for all its children.
Example:
# bad
class Person
# ...
end
# good
# Description/Explanation of Person class
class Person
# ...
end
Missing magic comment # frozen_string_literal: true
. Open
# @package MiGA
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- Exclude checks
This cop is designed to help upgrade to Ruby 3.0. It will add the
comment # frozen_string_literal: true
to the top of files to
enable frozen string literals. Frozen string literals may be default
in Ruby 3.0. The comment will be added below a shebang and encoding
comment. The frozen string literal comment is only valid in Ruby 2.3+.
Example: EnforcedStyle: when_needed (default)
# The `when_needed` style will add the frozen string literal comment
# to files only when the `TargetRubyVersion` is set to 2.3+.
# bad
module Foo
# ...
end
# good
# frozen_string_literal: true
module Foo
# ...
end
Example: EnforcedStyle: always
# The `always` style will always add the frozen string literal comment
# to a file, regardless of the Ruby version or if `freeze` or `<<` are
# called on a string literal.
# bad
module Bar
# ...
end
# good
# frozen_string_literal: true
module Bar
# ...
end
Example: EnforcedStyle: never
# The `never` will enforce that the frozen string literal comment does
# not exist in a file.
# bad
# frozen_string_literal: true
module Baz
# ...
end
# good
module Baz
# ...
end
Prefer $INPUT_LINE_NUMBER
or $NR
from the stdlib 'English' module (don't forget to require it) over $.
. Open
warn "Impossible to find dataset at line #{$.}: #{dn}. Ignoring..."
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Omit parentheses for ternary conditions. Open
mfh = (matrix =~ /\.gz$/) ?
Zlib::GzipReader.open(matrix) : File.open(matrix, 'r')
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This cop checks for the presence of parentheses around ternary
conditions. It is configurable to enforce inclusion or omission of
parentheses using EnforcedStyle
. Omission is only enforced when
removing the parentheses won't cause a different behavior.
Example: EnforcedStyle: requirenoparentheses (default)
# bad
foo = (bar?) ? a : b
foo = (bar.baz?) ? a : b
foo = (bar && baz) ? a : b
# good
foo = bar? ? a : b
foo = bar.baz? ? a : b
foo = bar && baz ? a : b
Example: EnforcedStyle: require_parentheses
# bad
foo = bar? ? a : b
foo = bar.baz? ? a : b
foo = bar && baz ? a : b
# good
foo = (bar?) ? a : b
foo = (bar.baz?) ? a : b
foo = (bar && baz) ? a : b
Example: EnforcedStyle: requireparentheseswhen_complex
# bad
foo = (bar?) ? a : b
foo = (bar.baz?) ? a : b
foo = bar && baz ? a : b
# good
foo = bar? ? a : b
foo = bar.baz? ? a : b
foo = (bar && baz) ? a : b