bio-miga/miga

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lib/miga/cli/action/archive.rb

Summary

Maintainability
A
35 mins
Test Coverage

Assignment Branch Condition size for perform is too high. [28.3/15]
Open

  def perform
    cli.ensure_par(tarball: '-o')
    unless cli[:tarball] =~ /\.tar\.gz$/
      raise 'The tarball path (-o) must have .tar.gz extension'
    end
Severity: Minor
Found in lib/miga/cli/action/archive.rb by rubocop

This cop checks that the ABC size of methods is not higher than the configured maximum. The ABC size is based on assignments, branches (method calls), and conditions. See http://c2.com/cgi/wiki?AbcMetric

Method has too many lines. [17/10]
Open

  def perform
    cli.ensure_par(tarball: '-o')
    unless cli[:tarball] =~ /\.tar\.gz$/
      raise 'The tarball path (-o) must have .tar.gz extension'
    end
Severity: Minor
Found in lib/miga/cli/action/archive.rb by rubocop

This cop checks if the length of a method exceeds some maximum value. Comment lines can optionally be ignored. The maximum allowed length is configurable.

Assignment Branch Condition size for each_file_listed is too high. [22/15]
Open

  def each_file_listed(datasets, &blk)
    datasets.each_with_index do |ds, k|
      cli.advance('Datasets:', k + 1, datasets.size, false)
      # Metadata
      blk.call(
Severity: Minor
Found in lib/miga/cli/action/archive.rb by rubocop

This cop checks that the ABC size of methods is not higher than the configured maximum. The ABC size is based on assignments, branches (method calls), and conditions. See http://c2.com/cgi/wiki?AbcMetric

Method has too many lines. [14/10]
Open

  def each_file_listed(datasets, &blk)
    datasets.each_with_index do |ds, k|
      cli.advance('Datasets:', k + 1, datasets.size, false)
      # Metadata
      blk.call(
Severity: Minor
Found in lib/miga/cli/action/archive.rb by rubocop

This cop checks if the length of a method exceeds some maximum value. Comment lines can optionally be ignored. The maximum allowed length is configurable.

Method has too many lines. [12/10]
Open

  def parse_cli
    cli.parse do |opt|
      opt.on(
        '-o', '--tarball PATH',
        '(Mandatory) Path to the archive to be created ending in .tar.gz'
Severity: Minor
Found in lib/miga/cli/action/archive.rb by rubocop

This cop checks if the length of a method exceeds some maximum value. Comment lines can optionally be ignored. The maximum allowed length is configurable.

Method has too many lines. [12/10]
Open

  def add_file_to_tar(tar, rel_path, abs_path)
    if File.directory? abs_path
      Dir["#{abs_path}/*"].each do |f|
        add_file_to_tar(tar, File.join(rel_path, File.basename(f)), f)
      end
Severity: Minor
Found in lib/miga/cli/action/archive.rb by rubocop

This cop checks if the length of a method exceeds some maximum value. Comment lines can optionally be ignored. The maximum allowed length is configurable.

Assignment Branch Condition size for add_file_to_tar is too high. [15.17/15]
Open

  def add_file_to_tar(tar, rel_path, abs_path)
    if File.directory? abs_path
      Dir["#{abs_path}/*"].each do |f|
        add_file_to_tar(tar, File.join(rel_path, File.basename(f)), f)
      end
Severity: Minor
Found in lib/miga/cli/action/archive.rb by rubocop

This cop checks that the ABC size of methods is not higher than the configured maximum. The ABC size is based on assignments, branches (method calls), and conditions. See http://c2.com/cgi/wiki?AbcMetric

Method add_file_to_tar has a Cognitive Complexity of 7 (exceeds 5 allowed). Consider refactoring.
Open

  def add_file_to_tar(tar, rel_path, abs_path)
    if File.directory? abs_path
      Dir["#{abs_path}/*"].each do |f|
        add_file_to_tar(tar, File.join(rel_path, File.basename(f)), f)
      end
Severity: Minor
Found in lib/miga/cli/action/archive.rb - About 35 mins to fix

Cognitive Complexity

Cognitive Complexity is a measure of how difficult a unit of code is to intuitively understand. Unlike Cyclomatic Complexity, which determines how difficult your code will be to test, Cognitive Complexity tells you how difficult your code will be to read and comprehend.

A method's cognitive complexity is based on a few simple rules:

  • Code is not considered more complex when it uses shorthand that the language provides for collapsing multiple statements into one
  • Code is considered more complex for each "break in the linear flow of the code"
  • Code is considered more complex when "flow breaking structures are nested"

Further reading

Use yield instead of blk.call.
Open

          blk.call(tar)
Severity: Minor
Found in lib/miga/cli/action/archive.rb by rubocop

This cop identifies the use of a &block parameter and block.call where yield would do just as well.

Example:

# bad
def method(&block)
  block.call
end
def another(&func)
  func.call 1, 2, 3
end

# good
def method
  yield
end
def another
  yield 1, 2, 3
end

Use yield instead of blk.call.
Open

      blk.call(
        File.join('metadata', File.basename(ds.metadata.path)),
        ds.metadata.path
      )
Severity: Minor
Found in lib/miga/cli/action/archive.rb by rubocop

This cop identifies the use of a &block parameter and block.call where yield would do just as well.

Example:

# bad
def method(&block)
  block.call
end
def another(&func)
  func.call 1, 2, 3
end

# good
def method
  yield
end
def another
  yield 1, 2, 3
end

Use yield instead of blk.call.
Open

          blk.call(File.join(res.relative_dir, rel_path), abs_path)
Severity: Minor
Found in lib/miga/cli/action/archive.rb by rubocop

This cop identifies the use of a &block parameter and block.call where yield would do just as well.

Example:

# bad
def method(&block)
  block.call
end
def another(&func)
  func.call 1, 2, 3
end

# good
def method
  yield
end
def another
  yield 1, 2, 3
end

Use yield instead of blk.call.
Open

        blk.call(res.relative_path, res.path) # <- JSON
Severity: Minor
Found in lib/miga/cli/action/archive.rb by rubocop

This cop identifies the use of a &block parameter and block.call where yield would do just as well.

Example:

# bad
def method(&block)
  block.call
end
def another(&func)
  func.call 1, 2, 3
end

# good
def method
  yield
end
def another
  yield 1, 2, 3
end

Use 0o for octal literals.
Open

      tar.add_file_simple(in_tar, 0666, File.size(abs_path)) do |ofh|
Severity: Minor
Found in lib/miga/cli/action/archive.rb by rubocop

This cop checks for octal, hex, binary and decimal literals using uppercase prefixes and corrects them to lowercase prefix or no prefix (in case of decimals). eg. for octal use 0o instead of 0 or 0O.

Can be configured to use 0 only for octal literals using EnforcedOctalStyle => zero_only

Use %i or %I for an array of symbols.
Open

      cli.opt_object(opt, [:project, :dataset_opt])
Severity: Minor
Found in lib/miga/cli/action/archive.rb by rubocop

This cop can check for array literals made up of symbols that are not using the %i() syntax.

Alternatively, it checks for symbol arrays using the %i() syntax on projects which do not want to use that syntax.

Configuration option: MinSize If set, arrays with fewer elements than this value will not trigger the cop. For example, a MinSize of3` will not enforce a style on an array of 2 or fewer elements.

Example: EnforcedStyle: percent (default)

# good
%i[foo bar baz]

# bad
[:foo, :bar, :baz]

Example: EnforcedStyle: brackets

# good
[:foo, :bar, :baz]

# bad
%i[foo bar baz]

Unused block argument - sym. If it's necessary, use _ or _sym as an argument name to indicate that it won't be used.
Open

      ds.each_result do |sym, res|
Severity: Minor
Found in lib/miga/cli/action/archive.rb by rubocop

This cop checks for unused block arguments.

Example:

# bad

do_something do |used, unused|
  puts used
end

do_something do |bar|
  puts :foo
end

define_method(:foo) do |bar|
  puts :baz
end

Example:

#good

do_something do |used, _unused|
  puts used
end

do_something do
  puts :foo
end

define_method(:foo) do |_bar|
  puts :baz
end

Missing top-level class documentation comment.
Open

class MiGA::Cli::Action::Archive < MiGA::Cli::Action
Severity: Minor
Found in lib/miga/cli/action/archive.rb by rubocop

This cop checks for missing top-level documentation of classes and modules. Classes with no body are exempt from the check and so are namespace modules - modules that have nothing in their bodies except classes, other modules, or constant definitions.

The documentation requirement is annulled if the class or module has a "#:nodoc:" comment next to it. Likewise, "#:nodoc: all" does the same for all its children.

Example:

# bad
class Person
  # ...
end

# good
# Description/Explanation of Person class
class Person
  # ...
end

Missing magic comment # frozen_string_literal: true.
Open

# @package MiGA
Severity: Minor
Found in lib/miga/cli/action/archive.rb by rubocop

This cop is designed to help upgrade to Ruby 3.0. It will add the comment # frozen_string_literal: true to the top of files to enable frozen string literals. Frozen string literals may be default in Ruby 3.0. The comment will be added below a shebang and encoding comment. The frozen string literal comment is only valid in Ruby 2.3+.

Example: EnforcedStyle: when_needed (default)

# The `when_needed` style will add the frozen string literal comment
# to files only when the `TargetRubyVersion` is set to 2.3+.
# bad
module Foo
  # ...
end

# good
# frozen_string_literal: true

module Foo
  # ...
end

Example: EnforcedStyle: always

# The `always` style will always add the frozen string literal comment
# to a file, regardless of the Ruby version or if `freeze` or `<<` are
# called on a string literal.
# bad
module Bar
  # ...
end

# good
# frozen_string_literal: true

module Bar
  # ...
end

Example: EnforcedStyle: never

# The `never` will enforce that the frozen string literal comment does
# not exist in a file.
# bad
# frozen_string_literal: true

module Baz
  # ...
end

# good
module Baz
  # ...
end

Use 0o for octal literals.
Open

    tar.add_file_simple(in_tar, 0666, string.size) { |fh| fh.write(string) }
Severity: Minor
Found in lib/miga/cli/action/archive.rb by rubocop

This cop checks for octal, hex, binary and decimal literals using uppercase prefixes and corrects them to lowercase prefix or no prefix (in case of decimals). eg. for octal use 0o instead of 0 or 0O.

Can be configured to use 0 only for octal literals using EnforcedOctalStyle => zero_only

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