Function lexer has 405 lines of code (exceeds 25 allowed). Consider refactoring.

Open

  var lexer = (function () {
    var lexer = {
      EOF: 1,

      parseError: function parseError(str, hash) {

Function _addReprListItem has 371 lines of code (exceeds 25 allowed). Consider refactoring.

Open

Menu.prototype._addReprListItem = function (panel, index, repr) {
  const self = this
  const reprList = $(
    `${self._menuId} [data-panel-type=miew-menu-panel-representation] .miew-repr-list`
  )

File SelectionParser.js has 785 lines of code (exceeds 250 allowed). Consider refactoring.

Open

/* eslint-disable */
// DO NOT EDIT! Automatically generated from .jison
/* parser generated by jison 0.4.18 */
/*
  Returns a Parser object of the following structure:

File mmtf.js has 771 lines of code (exceeds 250 allowed). Consider refactoring.

Open

!(function (r, t) {
  if ('function' == typeof define && define.amd) define(['exports'], t)
  else if ('object' == typeof exports && 'undefined' != typeof module)
    t(exports)
  else t((r.MMTF = r.MMTF || {}))

File Complex.js has 755 lines of code (exceeds 250 allowed). Consider refactoring.

Open

import logger from '../utils/logger'
import Atom from './Atom'
import Chain from './Chain'
import Helix from './Helix'
import Strand from './Strand'

Function anonymous has 346 lines of code (exceeds 25 allowed). Consider refactoring.

Open

    performAction: function anonymous(
      yytext,
      yyleng,
      yylineno,
      yy,

File ObjectControls.js has 729 lines of code (exceeds 250 allowed). Consider refactoring.

Open

import Timer from '../Timer'
import settings from '../settings'
import EventDispatcher from '../utils/EventDispatcher'
import { Matrix4, Quaternion, Vector2, Vector3 } from 'three'

Function CLIUtils has a Cognitive Complexity of 84 (exceeds 5 allowed). Consider refactoring.

Open

var CLIUtils = function () {
  function CLIUtils() {
    _classCallCheck(this, CLIUtils);
  }
  _createClass(CLIUtils, [{

• Read up
  Read up

Function CLIUtils has a Cognitive Complexity of 84 (exceeds 5 allowed). Consider refactoring.

Open

var CLIUtils = function () {
  function CLIUtils() {
    _classCallCheck(this, CLIUtils);
  }
  _createClass(CLIUtils, [{

• Read up
  Read up

File SSIsosurfaceGeometry.js has 721 lines of code (exceeds 250 allowed). Consider refactoring.

Open

import IsoSurfaceGeometry from './IsoSurfaceGeometry'
import IsoSurfaceAtomColored from './IsoSurfaceAtomColored'
import IsosurfaceBuildNormals from './IsosurfaceBuildNormals'
import IsoSurfaceMarchCube from './IsoSurfaceMarchCube'
import IsoSurfaceGeo from './IsoSurfaceGeo'

File ComplexVisual.js has 709 lines of code (exceeds 250 allowed). Consider refactoring.

Open

import utils from './utils'
import logger from './utils/logger'
import chem from './chem'
import settings from './settings'
import gfxutils from './gfx/gfxutils'

Function ContactSurface has 324 lines of code (exceeds 25 allowed). Consider refactoring.

Open

function ContactSurface(packedArrays, boundaries, params, _indexList) {
  // Field generation method adapted from AstexViewer (Mike Hartshorn)
  // by Fred Ludlow.
  // Other parts based heavily on NGL (Alexander Rose) EDT Surface class
  //

Function anonymous has 299 lines of code (exceeds 25 allowed). Consider refactoring.

Open

    performAction: function anonymous(yytext, yyleng, yylineno, yy, yystate
    , $$
    , _$
    ) {
      var $0 = $$.length - 1;

Function anonymous has 299 lines of code (exceeds 25 allowed). Consider refactoring.

Open

    performAction: function anonymous(yytext, yyleng, yylineno, yy, yystate
    , $$
    , _$
    ) {
      var $0 = $$.length - 1;

Function _buildAlphaHelices has a Cognitive Complexity of 75 (exceeds 5 allowed). Consider refactoring.

Open

  _buildAlphaHelices(inResidues, chainLength, inPreferPiHelices) {
    // Helix and Turn
    for (let stride = 3; stride <= 5; ++stride) {
      if (inResidues.length < stride) {
        break

• Read up
  Read up

Function process_file has a Cognitive Complexity of 71 (exceeds 5 allowed). Consider refactoring.

Open

def process_file(filename):
  print 'Processing %s...' % filename
  stats = defaultdict(int)
  stats_props = defaultdict(set)
  with open(filename) as f:

• Read up
  Read up

Function process_file has a Cognitive Complexity of 71 (exceeds 5 allowed). Consider refactoring.

Open

def process_file(filename):
  print 'Processing %s...' % filename
  stats = defaultdict(int)
  stats_props = defaultdict(set)
  with open(filename) as f:

• Read up
  Read up

File CMLParser.js has 631 lines of code (exceeds 250 allowed). Consider refactoring.

Open

import Parser from './Parser'
import chem from '../../chem'
import { isString } from 'lodash'
import { Vector3 } from 'three'

Function readCIF has 256 lines of code (exceeds 25 allowed). Consider refactoring.

Open

export default function readCIF(source) {
  let i = 0
  let j = 0
  const n = source.length
  let code = NaN

Function anonymous has 248 lines of code (exceeds 25 allowed). Consider refactoring.

Open

      performAction: function anonymous(
        yy,
        yy_,
        $avoiding_name_collisions,
        YY_START