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fepegar/torchio

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src/torchio/data/io.py

Summary

Maintainability
C
1 day
Test Coverage

File io.py has 382 lines of code (exceeds 250 allowed). Consider refactoring.
Open

import warnings
from pathlib import Path
from typing import Optional
from typing import Tuple
from typing import Union
Severity: Minor
Found in src/torchio/data/io.py - About 5 hrs to fix

    Function ensure_4d has a Cognitive Complexity of 20 (exceeds 5 allowed). Consider refactoring.
    Open

    def ensure_4d(tensor: TypeData, num_spatial_dims=None) -> torch.Tensor:
    # I wish named tensors were properly supported in PyTorch
    tensor = torch.as_tensor(tensor)
    num_dimensions = tensor.ndim
    if num_dimensions == 4:
    Severity: Minor
    Found in src/torchio/data/io.py - About 2 hrs to fix

    Cognitive Complexity

    Cognitive Complexity is a measure of how difficult a unit of code is to intuitively understand. Unlike Cyclomatic Complexity, which determines how difficult your code will be to test, Cognitive Complexity tells you how difficult your code will be to read and comprehend.

    A method's cognitive complexity is based on a few simple rules:

    • Code is not considered more complex when it uses shorthand that the language provides for collapsing multiple statements into one
    • Code is considered more complex for each "break in the linear flow of the code"
    • Code is considered more complex when "flow breaking structures are nested"

    Further reading

    Function _write_sitk has 5 arguments (exceeds 4 allowed). Consider refactoring.
    Open

    def _write_sitk(
    Severity: Minor
    Found in src/torchio/data/io.py - About 35 mins to fix

      Function _write_nibabel has a Cognitive Complexity of 7 (exceeds 5 allowed). Consider refactoring.
      Open

      def _write_nibabel(
    tensor: torch.Tensor,
    affine: TypeData,
    path: TypePath,
) -> None:
      Severity: Minor
      Found in src/torchio/data/io.py - About 35 mins to fix

      Cognitive Complexity

      Cognitive Complexity is a measure of how difficult a unit of code is to intuitively understand. Unlike Cyclomatic Complexity, which determines how difficult your code will be to test, Cognitive Complexity tells you how difficult your code will be to read and comprehend.

      A method's cognitive complexity is based on a few simple rules:

      • Code is not considered more complex when it uses shorthand that the language provides for collapsing multiple statements into one
      • Code is considered more complex for each "break in the linear flow of the code"
      • Code is considered more complex when "flow breaking structures are nested"

      Further reading

      Function nib_to_sitk has a Cognitive Complexity of 6 (exceeds 5 allowed). Consider refactoring.
      Open

      def nib_to_sitk(
    data: TypeData,
    affine: TypeData,
    force_3d: bool = False,
    force_4d: bool = False,
      Severity: Minor
      Found in src/torchio/data/io.py - About 25 mins to fix

      Cognitive Complexity

      Cognitive Complexity is a measure of how difficult a unit of code is to intuitively understand. Unlike Cyclomatic Complexity, which determines how difficult your code will be to test, Cognitive Complexity tells you how difficult your code will be to read and comprehend.

      A method's cognitive complexity is based on a few simple rules:

      • Code is not considered more complex when it uses shorthand that the language provides for collapsing multiple statements into one
      • Code is considered more complex for each "break in the linear flow of the code"
      • Code is considered more complex when "flow breaking structures are nested"

      Further reading

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