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.github/workflows/tox-test.yml | |
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.gitignore | |
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.pylintrc | |
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.travis.yml | |
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CHANGELOG.md | |
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CONTRIBUTORS.md | |
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Gam_Matrix_README.md | |
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LICENSE | |
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MANIFEST.in | |
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README.md | |
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docs/Makefile | |
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docs/api_docs/gamtools.bias.rst | |
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docs/api_docs/gamtools.call_windows.rst | |
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docs/api_docs/gamtools.compaction.rst | |
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docs/api_docs/gamtools.cosegregation.rst | |
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docs/api_docs/gamtools.enrichment.rst | |
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docs/api_docs/gamtools.matrix.rst | |
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docs/api_docs/gamtools.npmi.rst | |
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docs/api_docs/gamtools.permutation.rst | |
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docs/api_docs/gamtools.radial_position.rst | |
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docs/api_docs/gamtools.resolution.rst | |
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docs/api_docs/gamtools.segregation.rst | |
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docs/api_docs/index.rst | |
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docs/conf.py | 43 | A 0 mins |
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docs/content/installation.rst | |
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docs/content/overview.rst | |
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docs/content/tutorial.rst | |
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docs/img/chr19_30kb_matrix.png | |
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docs/img/chr19_50kb_coseg_matrix.png | |
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docs/img/chr19_50kb_matrix.png | |
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docs/img/chr19_large_50kb_matrix.png | |
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docs/index.rst | |
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docs/make.bat | |
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docs/tools/bias.rst | |
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docs/tools/call_windows.rst | |
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docs/tools/compaction.rst | |
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docs/tools/convert.rst | |
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docs/tools/enrichment.rst | |
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docs/tools/matrix.rst | |
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docs/tools/permute_segregation.rst | |
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docs/tools/process_nps.rst | |
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docs/tools/radial_pos.rst | |
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docs/tools/resolution_qc.rst | |
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docs/tools/select.rst | |
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lib/gamtools/__init__.py | 11 | A 0 mins |
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lib/gamtools/bias.py | 145 | A 0 mins |
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lib/gamtools/call_windows.py | 299 | B 4 hrs |
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lib/gamtools/compaction.py | 26 | A 1 hr |
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lib/gamtools/cosegregation.py | 444 | D 1 day |
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