| .gitignore | |
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| .travis.yml | |
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| Gemfile | |
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| LICENSE | |
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| README.md | |
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| Rakefile | |
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| bin/mspire | |
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| lib/core_ext/array/in_groups.rb | 20 | A 1 hr |
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| lib/core_ext/enumerable.rb | 10 | A 0 mins |
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| lib/cv.rb | 3 | A 0 mins |
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| lib/cv/param.rb | 40 | A 0 mins |
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| lib/cv/referenceable_param_group_ref.rb | 11 | A 0 mins |
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| lib/hash/inverse.rb | 9 | A 1 hr |
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| lib/io/bookmark.rb | 9 | A 0 mins |
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| lib/merge.rb | 6 | A 0 mins |
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| lib/mspire.rb | 4 | A 0 mins |
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| lib/mspire/bin.rb | 40 | C 1 day |
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| lib/mspire/commandline.rb | 33 | A 25 mins |
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| lib/mspire/cv/obo.rb | 15 | A 0 mins |
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| lib/mspire/cv/param.rb | 27 | A 35 mins |
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| lib/mspire/cv/paramable.rb | 110 | A 1 hr |
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| lib/mspire/digester.rb | 116 | A 1 hr |
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| lib/mspire/error_rate/decoy.rb | 26 | A 0 mins |
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| lib/mspire/error_rate/qvalue.rb | 59 | A 1 hr |
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| lib/mspire/fasta.rb | 30 | A 0 mins |
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| lib/mspire/ident.rb | 12 | A 0 mins |
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| lib/mspire/ident/peptide.rb | 49 | A 0 mins |
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| lib/mspire/ident/peptide/db.rb | 25 | A 0 mins |
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| lib/mspire/ident/peptide/db/creator.rb | 206 | D 1 day |
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| lib/mspire/ident/peptide/db/io.rb | 49 | A 0 mins |
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| lib/mspire/ident/peptide_hit.rb | 19 | A 0 mins |
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| lib/mspire/ident/peptide_hit/qvalue.rb | 43 | A 0 mins |
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| lib/mspire/ident/pepxml.rb | 87 | A 2 hrs |
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| lib/mspire/ident/pepxml/modifications.rb | 47 | A 0 mins |
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| lib/mspire/ident/pepxml/msms_pipeline_analysis.rb | 44 | A 0 mins |
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| lib/mspire/ident/pepxml/msms_run_summary.rb | 61 | A 1 hr |
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| lib/mspire/ident/pepxml/parameters.rb | 13 | A 0 mins |
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| lib/mspire/ident/pepxml/sample_enzyme.rb | 121 | A 1 hr |
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| lib/mspire/ident/pepxml/search_database.rb | 34 | A 0 mins |
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| lib/mspire/ident/pepxml/search_hit.rb | 84 | A 0 mins |
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| lib/mspire/ident/pepxml/search_hit/modification_info.rb | 46 | A 0 mins |
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| lib/mspire/ident/pepxml/search_result.rb | 24 | A 0 mins |
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| lib/mspire/ident/pepxml/search_summary.rb | 57 | A 45 mins |
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| lib/mspire/ident/pepxml/spectrum_query.rb | 64 | A 0 mins |
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| lib/mspire/ident/protein.rb | 20 | A 0 mins |
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| lib/mspire/ident/protein_group.rb | 53 | A 2 hrs |
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| lib/mspire/ident/search.rb | 60 | A 55 mins |
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| lib/mspire/imzml/writer.rb | 304 | D 2 days |
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| lib/mspire/imzml/writer/commandline.rb | 91 | A 2 hrs |
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| lib/mspire/mascot.rb | 5 | A 0 mins |
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