tomopy/tomopy

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Similar blocks of code found in 6 locations. Consider refactoring.
Open

def barbara(size=512, dtype='float32'):
    """
    Load test Barbara image array.

    Parameters
Severity: Major
Found in source/tomopy/misc/phantom.py and 5 other locations - About 5 hrs to fix
source/tomopy/misc/phantom.py on lines 145..168
source/tomopy/misc/phantom.py on lines 171..194
source/tomopy/misc/phantom.py on lines 197..220
source/tomopy/misc/phantom.py on lines 223..246
source/tomopy/misc/phantom.py on lines 249..272

Duplicated Code

Duplicated code can lead to software that is hard to understand and difficult to change. The Don't Repeat Yourself (DRY) principle states:

Every piece of knowledge must have a single, unambiguous, authoritative representation within a system.

When you violate DRY, bugs and maintenance problems are sure to follow. Duplicated code has a tendency to both continue to replicate and also to diverge (leaving bugs as two similar implementations differ in subtle ways).

Tuning

This issue has a mass of 95.

We set useful threshold defaults for the languages we support but you may want to adjust these settings based on your project guidelines.

The threshold configuration represents the minimum mass a code block must have to be analyzed for duplication. The lower the threshold, the more fine-grained the comparison.

If the engine is too easily reporting duplication, try raising the threshold. If you suspect that the engine isn't catching enough duplication, try lowering the threshold. The best setting tends to differ from language to language.

See codeclimate-duplication's documentation for more information about tuning the mass threshold in your .codeclimate.yml.

Refactorings

Further Reading

Similar blocks of code found in 6 locations. Consider refactoring.
Open

def cameraman(size=512, dtype='float32'):
    """
    Load test cameraman image array.

    Parameters
Severity: Major
Found in source/tomopy/misc/phantom.py and 5 other locations - About 5 hrs to fix
source/tomopy/misc/phantom.py on lines 119..142
source/tomopy/misc/phantom.py on lines 171..194
source/tomopy/misc/phantom.py on lines 197..220
source/tomopy/misc/phantom.py on lines 223..246
source/tomopy/misc/phantom.py on lines 249..272

Duplicated Code

Duplicated code can lead to software that is hard to understand and difficult to change. The Don't Repeat Yourself (DRY) principle states:

Every piece of knowledge must have a single, unambiguous, authoritative representation within a system.

When you violate DRY, bugs and maintenance problems are sure to follow. Duplicated code has a tendency to both continue to replicate and also to diverge (leaving bugs as two similar implementations differ in subtle ways).

Tuning

This issue has a mass of 95.

We set useful threshold defaults for the languages we support but you may want to adjust these settings based on your project guidelines.

The threshold configuration represents the minimum mass a code block must have to be analyzed for duplication. The lower the threshold, the more fine-grained the comparison.

If the engine is too easily reporting duplication, try raising the threshold. If you suspect that the engine isn't catching enough duplication, try lowering the threshold. The best setting tends to differ from language to language.

See codeclimate-duplication's documentation for more information about tuning the mass threshold in your .codeclimate.yml.

Refactorings

Further Reading

Similar blocks of code found in 6 locations. Consider refactoring.
Open

def checkerboard(size=512, dtype='float32'):
    """
    Load test checkerboard image array.

    Parameters
Severity: Major
Found in source/tomopy/misc/phantom.py and 5 other locations - About 5 hrs to fix
source/tomopy/misc/phantom.py on lines 119..142
source/tomopy/misc/phantom.py on lines 145..168
source/tomopy/misc/phantom.py on lines 197..220
source/tomopy/misc/phantom.py on lines 223..246
source/tomopy/misc/phantom.py on lines 249..272

Duplicated Code

Duplicated code can lead to software that is hard to understand and difficult to change. The Don't Repeat Yourself (DRY) principle states:

Every piece of knowledge must have a single, unambiguous, authoritative representation within a system.

When you violate DRY, bugs and maintenance problems are sure to follow. Duplicated code has a tendency to both continue to replicate and also to diverge (leaving bugs as two similar implementations differ in subtle ways).

Tuning

This issue has a mass of 95.

We set useful threshold defaults for the languages we support but you may want to adjust these settings based on your project guidelines.

The threshold configuration represents the minimum mass a code block must have to be analyzed for duplication. The lower the threshold, the more fine-grained the comparison.

If the engine is too easily reporting duplication, try raising the threshold. If you suspect that the engine isn't catching enough duplication, try lowering the threshold. The best setting tends to differ from language to language.

See codeclimate-duplication's documentation for more information about tuning the mass threshold in your .codeclimate.yml.

Refactorings

Further Reading

Similar blocks of code found in 6 locations. Consider refactoring.
Open

def peppers(size=512, dtype='float32'):
    """
    Load test peppers image array.

    Parameters
Severity: Major
Found in source/tomopy/misc/phantom.py and 5 other locations - About 5 hrs to fix
source/tomopy/misc/phantom.py on lines 119..142
source/tomopy/misc/phantom.py on lines 145..168
source/tomopy/misc/phantom.py on lines 171..194
source/tomopy/misc/phantom.py on lines 197..220
source/tomopy/misc/phantom.py on lines 249..272

Duplicated Code

Duplicated code can lead to software that is hard to understand and difficult to change. The Don't Repeat Yourself (DRY) principle states:

Every piece of knowledge must have a single, unambiguous, authoritative representation within a system.

When you violate DRY, bugs and maintenance problems are sure to follow. Duplicated code has a tendency to both continue to replicate and also to diverge (leaving bugs as two similar implementations differ in subtle ways).

Tuning

This issue has a mass of 95.

We set useful threshold defaults for the languages we support but you may want to adjust these settings based on your project guidelines.

The threshold configuration represents the minimum mass a code block must have to be analyzed for duplication. The lower the threshold, the more fine-grained the comparison.

If the engine is too easily reporting duplication, try raising the threshold. If you suspect that the engine isn't catching enough duplication, try lowering the threshold. The best setting tends to differ from language to language.

See codeclimate-duplication's documentation for more information about tuning the mass threshold in your .codeclimate.yml.

Refactorings

Further Reading

Similar blocks of code found in 4 locations. Consider refactoring.
Open

    def test_ospml_quad(self):
        rng = default_rng(0)
        ind_block = np.arange(len(self.ang))
        rng.shuffle(ind_block)
        assert_allclose(
Severity: Major
Found in test/test_tomopy/test_recon/test_algorithm.py and 3 other locations - About 4 hrs to fix
test/test_tomopy/test_recon/test_algorithm.py on lines 88..101
test/test_tomopy/test_recon/test_algorithm.py on lines 200..213
test/test_tomopy/test_recon/test_algorithm.py on lines 218..231

Duplicated Code

Duplicated code can lead to software that is hard to understand and difficult to change. The Don't Repeat Yourself (DRY) principle states:

Every piece of knowledge must have a single, unambiguous, authoritative representation within a system.

When you violate DRY, bugs and maintenance problems are sure to follow. Duplicated code has a tendency to both continue to replicate and also to diverge (leaving bugs as two similar implementations differ in subtle ways).

Tuning

This issue has a mass of 82.

We set useful threshold defaults for the languages we support but you may want to adjust these settings based on your project guidelines.

The threshold configuration represents the minimum mass a code block must have to be analyzed for duplication. The lower the threshold, the more fine-grained the comparison.

If the engine is too easily reporting duplication, try raising the threshold. If you suspect that the engine isn't catching enough duplication, try lowering the threshold. The best setting tends to differ from language to language.

See codeclimate-duplication's documentation for more information about tuning the mass threshold in your .codeclimate.yml.

Refactorings

Further Reading

Similar blocks of code found in 4 locations. Consider refactoring.
Open

    def test_ospml_hybrid(self):
        rng = default_rng(0)
        ind_block = np.arange(len(self.ang))
        rng.shuffle(ind_block)
        assert_allclose(
Severity: Major
Found in test/test_tomopy/test_recon/test_algorithm.py and 3 other locations - About 4 hrs to fix
test/test_tomopy/test_recon/test_algorithm.py on lines 88..101
test/test_tomopy/test_recon/test_algorithm.py on lines 200..213
test/test_tomopy/test_recon/test_algorithm.py on lines 236..249

Duplicated Code

Duplicated code can lead to software that is hard to understand and difficult to change. The Don't Repeat Yourself (DRY) principle states:

Every piece of knowledge must have a single, unambiguous, authoritative representation within a system.

When you violate DRY, bugs and maintenance problems are sure to follow. Duplicated code has a tendency to both continue to replicate and also to diverge (leaving bugs as two similar implementations differ in subtle ways).

Tuning

This issue has a mass of 82.

We set useful threshold defaults for the languages we support but you may want to adjust these settings based on your project guidelines.

The threshold configuration represents the minimum mass a code block must have to be analyzed for duplication. The lower the threshold, the more fine-grained the comparison.

If the engine is too easily reporting duplication, try raising the threshold. If you suspect that the engine isn't catching enough duplication, try lowering the threshold. The best setting tends to differ from language to language.

See codeclimate-duplication's documentation for more information about tuning the mass threshold in your .codeclimate.yml.

Refactorings

Further Reading

Similar blocks of code found in 4 locations. Consider refactoring.
Open

    def test_bart(self):
        rng = default_rng(0)
        ind_block = np.arange(len(self.ang))
        rng.shuffle(ind_block)
        assert_allclose(
Severity: Major
Found in test/test_tomopy/test_recon/test_algorithm.py and 3 other locations - About 4 hrs to fix
test/test_tomopy/test_recon/test_algorithm.py on lines 200..213
test/test_tomopy/test_recon/test_algorithm.py on lines 218..231
test/test_tomopy/test_recon/test_algorithm.py on lines 236..249

Duplicated Code

Duplicated code can lead to software that is hard to understand and difficult to change. The Don't Repeat Yourself (DRY) principle states:

Every piece of knowledge must have a single, unambiguous, authoritative representation within a system.

When you violate DRY, bugs and maintenance problems are sure to follow. Duplicated code has a tendency to both continue to replicate and also to diverge (leaving bugs as two similar implementations differ in subtle ways).

Tuning

This issue has a mass of 82.

We set useful threshold defaults for the languages we support but you may want to adjust these settings based on your project guidelines.

The threshold configuration represents the minimum mass a code block must have to be analyzed for duplication. The lower the threshold, the more fine-grained the comparison.

If the engine is too easily reporting duplication, try raising the threshold. If you suspect that the engine isn't catching enough duplication, try lowering the threshold. The best setting tends to differ from language to language.

See codeclimate-duplication's documentation for more information about tuning the mass threshold in your .codeclimate.yml.

Refactorings

Further Reading

Similar blocks of code found in 4 locations. Consider refactoring.
Open

    def test_osem(self):
        rng = default_rng(0)
        ind_block = np.arange(len(self.ang))
        rng.shuffle(ind_block)
        assert_allclose(
Severity: Major
Found in test/test_tomopy/test_recon/test_algorithm.py and 3 other locations - About 4 hrs to fix
test/test_tomopy/test_recon/test_algorithm.py on lines 88..101
test/test_tomopy/test_recon/test_algorithm.py on lines 218..231
test/test_tomopy/test_recon/test_algorithm.py on lines 236..249

Duplicated Code

Duplicated code can lead to software that is hard to understand and difficult to change. The Don't Repeat Yourself (DRY) principle states:

Every piece of knowledge must have a single, unambiguous, authoritative representation within a system.

When you violate DRY, bugs and maintenance problems are sure to follow. Duplicated code has a tendency to both continue to replicate and also to diverge (leaving bugs as two similar implementations differ in subtle ways).

Tuning

This issue has a mass of 82.

We set useful threshold defaults for the languages we support but you may want to adjust these settings based on your project guidelines.

The threshold configuration represents the minimum mass a code block must have to be analyzed for duplication. The lower the threshold, the more fine-grained the comparison.

If the engine is too easily reporting duplication, try raising the threshold. If you suspect that the engine isn't catching enough duplication, try lowering the threshold. The best setting tends to differ from language to language.

See codeclimate-duplication's documentation for more information about tuning the mass threshold in your .codeclimate.yml.

Refactorings

Further Reading

Similar blocks of code found in 7 locations. Consider refactoring.
Open

    def test_lena(self):
        assert_equals(lena().dtype, 'float32')
        assert_equals(lena().shape, (1, 512, 512))
        assert_equals(lena(size=(128, 256)).shape, (1, 128, 256))
        assert_equals(lena(size=64).shape, (1, 64, 64))
Severity: Major
Found in test/test_tomopy/test_misc/test_phantom.py and 6 other locations - About 4 hrs to fix
test/test_tomopy/test_misc/test_phantom.py on lines 63..67
test/test_tomopy/test_misc/test_phantom.py on lines 69..73
test/test_tomopy/test_misc/test_phantom.py on lines 75..79
test/test_tomopy/test_misc/test_phantom.py on lines 81..85
test/test_tomopy/test_misc/test_phantom.py on lines 93..97
test/test_tomopy/test_misc/test_phantom.py on lines 99..103

Duplicated Code

Duplicated code can lead to software that is hard to understand and difficult to change. The Don't Repeat Yourself (DRY) principle states:

Every piece of knowledge must have a single, unambiguous, authoritative representation within a system.

When you violate DRY, bugs and maintenance problems are sure to follow. Duplicated code has a tendency to both continue to replicate and also to diverge (leaving bugs as two similar implementations differ in subtle ways).

Tuning

This issue has a mass of 77.

We set useful threshold defaults for the languages we support but you may want to adjust these settings based on your project guidelines.

The threshold configuration represents the minimum mass a code block must have to be analyzed for duplication. The lower the threshold, the more fine-grained the comparison.

If the engine is too easily reporting duplication, try raising the threshold. If you suspect that the engine isn't catching enough duplication, try lowering the threshold. The best setting tends to differ from language to language.

See codeclimate-duplication's documentation for more information about tuning the mass threshold in your .codeclimate.yml.

Refactorings

Further Reading

Similar blocks of code found in 7 locations. Consider refactoring.
Open

    def test_checkerboard(self):
        assert_equals(checkerboard().dtype, 'float32')
        assert_equals(checkerboard().shape, (1, 512, 512))
        assert_equals(checkerboard(size=(128, 256)).shape, (1, 128, 256))
        assert_equals(checkerboard(size=64).shape, (1, 64, 64))
Severity: Major
Found in test/test_tomopy/test_misc/test_phantom.py and 6 other locations - About 4 hrs to fix
test/test_tomopy/test_misc/test_phantom.py on lines 63..67
test/test_tomopy/test_misc/test_phantom.py on lines 69..73
test/test_tomopy/test_misc/test_phantom.py on lines 75..79
test/test_tomopy/test_misc/test_phantom.py on lines 87..91
test/test_tomopy/test_misc/test_phantom.py on lines 93..97
test/test_tomopy/test_misc/test_phantom.py on lines 99..103

Duplicated Code

Duplicated code can lead to software that is hard to understand and difficult to change. The Don't Repeat Yourself (DRY) principle states:

Every piece of knowledge must have a single, unambiguous, authoritative representation within a system.

When you violate DRY, bugs and maintenance problems are sure to follow. Duplicated code has a tendency to both continue to replicate and also to diverge (leaving bugs as two similar implementations differ in subtle ways).

Tuning

This issue has a mass of 77.

We set useful threshold defaults for the languages we support but you may want to adjust these settings based on your project guidelines.

The threshold configuration represents the minimum mass a code block must have to be analyzed for duplication. The lower the threshold, the more fine-grained the comparison.

If the engine is too easily reporting duplication, try raising the threshold. If you suspect that the engine isn't catching enough duplication, try lowering the threshold. The best setting tends to differ from language to language.

See codeclimate-duplication's documentation for more information about tuning the mass threshold in your .codeclimate.yml.

Refactorings

Further Reading

Similar blocks of code found in 7 locations. Consider refactoring.
Open

    def test_baboon(self):
        assert_equals(baboon().dtype, 'float32')
        assert_equals(baboon().shape, (1, 512, 512))
        assert_equals(baboon(size=(128, 256)).shape, (1, 128, 256))
        assert_equals(baboon(size=64).shape, (1, 64, 64))
Severity: Major
Found in test/test_tomopy/test_misc/test_phantom.py and 6 other locations - About 4 hrs to fix
test/test_tomopy/test_misc/test_phantom.py on lines 69..73
test/test_tomopy/test_misc/test_phantom.py on lines 75..79
test/test_tomopy/test_misc/test_phantom.py on lines 81..85
test/test_tomopy/test_misc/test_phantom.py on lines 87..91
test/test_tomopy/test_misc/test_phantom.py on lines 93..97
test/test_tomopy/test_misc/test_phantom.py on lines 99..103

Duplicated Code

Duplicated code can lead to software that is hard to understand and difficult to change. The Don't Repeat Yourself (DRY) principle states:

Every piece of knowledge must have a single, unambiguous, authoritative representation within a system.

When you violate DRY, bugs and maintenance problems are sure to follow. Duplicated code has a tendency to both continue to replicate and also to diverge (leaving bugs as two similar implementations differ in subtle ways).

Tuning

This issue has a mass of 77.

We set useful threshold defaults for the languages we support but you may want to adjust these settings based on your project guidelines.

The threshold configuration represents the minimum mass a code block must have to be analyzed for duplication. The lower the threshold, the more fine-grained the comparison.

If the engine is too easily reporting duplication, try raising the threshold. If you suspect that the engine isn't catching enough duplication, try lowering the threshold. The best setting tends to differ from language to language.

See codeclimate-duplication's documentation for more information about tuning the mass threshold in your .codeclimate.yml.

Refactorings

Further Reading

Similar blocks of code found in 7 locations. Consider refactoring.
Open

    def test_shepp2d(self):
        assert_equals(shepp2d().dtype, 'float32')
        assert_equals(shepp2d().shape, (1, 512, 512))
        assert_equals(shepp2d(size=(128, 256)).shape, (1, 128, 256))
        assert_equals(shepp2d(size=64).shape, (1, 64, 64))
Severity: Major
Found in test/test_tomopy/test_misc/test_phantom.py and 6 other locations - About 4 hrs to fix
test/test_tomopy/test_misc/test_phantom.py on lines 63..67
test/test_tomopy/test_misc/test_phantom.py on lines 69..73
test/test_tomopy/test_misc/test_phantom.py on lines 75..79
test/test_tomopy/test_misc/test_phantom.py on lines 81..85
test/test_tomopy/test_misc/test_phantom.py on lines 87..91
test/test_tomopy/test_misc/test_phantom.py on lines 93..97

Duplicated Code

Duplicated code can lead to software that is hard to understand and difficult to change. The Don't Repeat Yourself (DRY) principle states:

Every piece of knowledge must have a single, unambiguous, authoritative representation within a system.

When you violate DRY, bugs and maintenance problems are sure to follow. Duplicated code has a tendency to both continue to replicate and also to diverge (leaving bugs as two similar implementations differ in subtle ways).

Tuning

This issue has a mass of 77.

We set useful threshold defaults for the languages we support but you may want to adjust these settings based on your project guidelines.

The threshold configuration represents the minimum mass a code block must have to be analyzed for duplication. The lower the threshold, the more fine-grained the comparison.

If the engine is too easily reporting duplication, try raising the threshold. If you suspect that the engine isn't catching enough duplication, try lowering the threshold. The best setting tends to differ from language to language.

See codeclimate-duplication's documentation for more information about tuning the mass threshold in your .codeclimate.yml.

Refactorings

Further Reading

Similar blocks of code found in 7 locations. Consider refactoring.
Open

    def test_barbara(self):
        assert_equals(barbara().dtype, 'float32')
        assert_equals(barbara().shape, (1, 512, 512))
        assert_equals(barbara(size=(128, 256)).shape, (1, 128, 256))
        assert_equals(barbara(size=64).shape, (1, 64, 64))
Severity: Major
Found in test/test_tomopy/test_misc/test_phantom.py and 6 other locations - About 4 hrs to fix
test/test_tomopy/test_misc/test_phantom.py on lines 63..67
test/test_tomopy/test_misc/test_phantom.py on lines 75..79
test/test_tomopy/test_misc/test_phantom.py on lines 81..85
test/test_tomopy/test_misc/test_phantom.py on lines 87..91
test/test_tomopy/test_misc/test_phantom.py on lines 93..97
test/test_tomopy/test_misc/test_phantom.py on lines 99..103

Duplicated Code

Duplicated code can lead to software that is hard to understand and difficult to change. The Don't Repeat Yourself (DRY) principle states:

Every piece of knowledge must have a single, unambiguous, authoritative representation within a system.

When you violate DRY, bugs and maintenance problems are sure to follow. Duplicated code has a tendency to both continue to replicate and also to diverge (leaving bugs as two similar implementations differ in subtle ways).

Tuning

This issue has a mass of 77.

We set useful threshold defaults for the languages we support but you may want to adjust these settings based on your project guidelines.

The threshold configuration represents the minimum mass a code block must have to be analyzed for duplication. The lower the threshold, the more fine-grained the comparison.

If the engine is too easily reporting duplication, try raising the threshold. If you suspect that the engine isn't catching enough duplication, try lowering the threshold. The best setting tends to differ from language to language.

See codeclimate-duplication's documentation for more information about tuning the mass threshold in your .codeclimate.yml.

Refactorings

Further Reading

Similar blocks of code found in 7 locations. Consider refactoring.
Open

    def test_cameraman(self):
        assert_equals(cameraman().dtype, 'float32')
        assert_equals(cameraman().shape, (1, 512, 512))
        assert_equals(cameraman(size=(128, 256)).shape, (1, 128, 256))
        assert_equals(cameraman(size=64).shape, (1, 64, 64))
Severity: Major
Found in test/test_tomopy/test_misc/test_phantom.py and 6 other locations - About 4 hrs to fix
test/test_tomopy/test_misc/test_phantom.py on lines 63..67
test/test_tomopy/test_misc/test_phantom.py on lines 69..73
test/test_tomopy/test_misc/test_phantom.py on lines 81..85
test/test_tomopy/test_misc/test_phantom.py on lines 87..91
test/test_tomopy/test_misc/test_phantom.py on lines 93..97
test/test_tomopy/test_misc/test_phantom.py on lines 99..103

Duplicated Code

Duplicated code can lead to software that is hard to understand and difficult to change. The Don't Repeat Yourself (DRY) principle states:

Every piece of knowledge must have a single, unambiguous, authoritative representation within a system.

When you violate DRY, bugs and maintenance problems are sure to follow. Duplicated code has a tendency to both continue to replicate and also to diverge (leaving bugs as two similar implementations differ in subtle ways).

Tuning

This issue has a mass of 77.

We set useful threshold defaults for the languages we support but you may want to adjust these settings based on your project guidelines.

The threshold configuration represents the minimum mass a code block must have to be analyzed for duplication. The lower the threshold, the more fine-grained the comparison.

If the engine is too easily reporting duplication, try raising the threshold. If you suspect that the engine isn't catching enough duplication, try lowering the threshold. The best setting tends to differ from language to language.

See codeclimate-duplication's documentation for more information about tuning the mass threshold in your .codeclimate.yml.

Refactorings

Further Reading

Similar blocks of code found in 7 locations. Consider refactoring.
Open

    def test_peppers(self):
        assert_equals(peppers().dtype, 'float32')
        assert_equals(peppers().shape, (1, 512, 512))
        assert_equals(peppers(size=(128, 256)).shape, (1, 128, 256))
        assert_equals(peppers(size=64).shape, (1, 64, 64))
Severity: Major
Found in test/test_tomopy/test_misc/test_phantom.py and 6 other locations - About 4 hrs to fix
test/test_tomopy/test_misc/test_phantom.py on lines 63..67
test/test_tomopy/test_misc/test_phantom.py on lines 69..73
test/test_tomopy/test_misc/test_phantom.py on lines 75..79
test/test_tomopy/test_misc/test_phantom.py on lines 81..85
test/test_tomopy/test_misc/test_phantom.py on lines 87..91
test/test_tomopy/test_misc/test_phantom.py on lines 99..103

Duplicated Code

Duplicated code can lead to software that is hard to understand and difficult to change. The Don't Repeat Yourself (DRY) principle states:

Every piece of knowledge must have a single, unambiguous, authoritative representation within a system.

When you violate DRY, bugs and maintenance problems are sure to follow. Duplicated code has a tendency to both continue to replicate and also to diverge (leaving bugs as two similar implementations differ in subtle ways).

Tuning

This issue has a mass of 77.

We set useful threshold defaults for the languages we support but you may want to adjust these settings based on your project guidelines.

The threshold configuration represents the minimum mass a code block must have to be analyzed for duplication. The lower the threshold, the more fine-grained the comparison.

If the engine is too easily reporting duplication, try raising the threshold. If you suspect that the engine isn't catching enough duplication, try lowering the threshold. The best setting tends to differ from language to language.

See codeclimate-duplication's documentation for more information about tuning the mass threshold in your .codeclimate.yml.

Refactorings

Further Reading

Similar blocks of code found in 2 locations. Consider refactoring.
Open

    @unittest.skipUnless("CUDA_VERSION" in os.environ, "CUDA_VERSION not set.")
    def test_mlem_gpu(self):
        result = recon(self.prj,
                       self.ang,
                       algorithm='mlem',
Severity: Major
Found in test/test_tomopy/test_recon/test_algorithm.py and 1 other location - About 3 hrs to fix
test/test_tomopy/test_recon/test_algorithm.py on lines 284..294

Duplicated Code

Duplicated code can lead to software that is hard to understand and difficult to change. The Don't Repeat Yourself (DRY) principle states:

Every piece of knowledge must have a single, unambiguous, authoritative representation within a system.

When you violate DRY, bugs and maintenance problems are sure to follow. Duplicated code has a tendency to both continue to replicate and also to diverge (leaving bugs as two similar implementations differ in subtle ways).

Tuning

This issue has a mass of 72.

We set useful threshold defaults for the languages we support but you may want to adjust these settings based on your project guidelines.

The threshold configuration represents the minimum mass a code block must have to be analyzed for duplication. The lower the threshold, the more fine-grained the comparison.

If the engine is too easily reporting duplication, try raising the threshold. If you suspect that the engine isn't catching enough duplication, try lowering the threshold. The best setting tends to differ from language to language.

See codeclimate-duplication's documentation for more information about tuning the mass threshold in your .codeclimate.yml.

Refactorings

Further Reading

Similar blocks of code found in 2 locations. Consider refactoring.
Open

    @unittest.skipUnless("CUDA_VERSION" in os.environ, "CUDA_VERSION not set.")
    def test_sirt_gpu(self):
        result = recon(self.prj,
                       self.ang,
                       algorithm='sirt',
Severity: Major
Found in test/test_tomopy/test_recon/test_algorithm.py and 1 other location - About 3 hrs to fix
test/test_tomopy/test_recon/test_algorithm.py on lines 188..198

Duplicated Code

Duplicated code can lead to software that is hard to understand and difficult to change. The Don't Repeat Yourself (DRY) principle states:

Every piece of knowledge must have a single, unambiguous, authoritative representation within a system.

When you violate DRY, bugs and maintenance problems are sure to follow. Duplicated code has a tendency to both continue to replicate and also to diverge (leaving bugs as two similar implementations differ in subtle ways).

Tuning

This issue has a mass of 72.

We set useful threshold defaults for the languages we support but you may want to adjust these settings based on your project guidelines.

The threshold configuration represents the minimum mass a code block must have to be analyzed for duplication. The lower the threshold, the more fine-grained the comparison.

If the engine is too easily reporting duplication, try raising the threshold. If you suspect that the engine isn't catching enough duplication, try lowering the threshold. The best setting tends to differ from language to language.

See codeclimate-duplication's documentation for more information about tuning the mass threshold in your .codeclimate.yml.

Refactorings

Further Reading

Identical blocks of code found in 2 locations. Consider refactoring.
Open

    if nchunk is None:
        # calculate number of slices to send to each GPU
        chunk_size = axis_size // ncore
        leftover = axis_size % ncore
        sizes = np.ones(ncore, dtype=np.int) * chunk_size
Severity: Major
Found in source/tomopy/util/mproc.py and 1 other location - About 3 hrs to fix
source/tomopy/util/mproc.py on lines 145..160

Duplicated Code

Duplicated code can lead to software that is hard to understand and difficult to change. The Don't Repeat Yourself (DRY) principle states:

Every piece of knowledge must have a single, unambiguous, authoritative representation within a system.

When you violate DRY, bugs and maintenance problems are sure to follow. Duplicated code has a tendency to both continue to replicate and also to diverge (leaving bugs as two similar implementations differ in subtle ways).

Tuning

This issue has a mass of 71.

We set useful threshold defaults for the languages we support but you may want to adjust these settings based on your project guidelines.

The threshold configuration represents the minimum mass a code block must have to be analyzed for duplication. The lower the threshold, the more fine-grained the comparison.

If the engine is too easily reporting duplication, try raising the threshold. If you suspect that the engine isn't catching enough duplication, try lowering the threshold. The best setting tends to differ from language to language.

See codeclimate-duplication's documentation for more information about tuning the mass threshold in your .codeclimate.yml.

Refactorings

Further Reading

Identical blocks of code found in 2 locations. Consider refactoring.
Open

    if nchunk is None:
        # calculate number of slices to send to each GPU
        chunk_size = axis_size // ncore
        leftover = axis_size % ncore
        sizes = np.ones(ncore, dtype=int) * chunk_size
Severity: Major
Found in source/tomopy/util/mproc.py and 1 other location - About 3 hrs to fix
source/tomopy/util/mproc.py on lines 168..185

Duplicated Code

Duplicated code can lead to software that is hard to understand and difficult to change. The Don't Repeat Yourself (DRY) principle states:

Every piece of knowledge must have a single, unambiguous, authoritative representation within a system.

When you violate DRY, bugs and maintenance problems are sure to follow. Duplicated code has a tendency to both continue to replicate and also to diverge (leaving bugs as two similar implementations differ in subtle ways).

Tuning

This issue has a mass of 71.

We set useful threshold defaults for the languages we support but you may want to adjust these settings based on your project guidelines.

The threshold configuration represents the minimum mass a code block must have to be analyzed for duplication. The lower the threshold, the more fine-grained the comparison.

If the engine is too easily reporting duplication, try raising the threshold. If you suspect that the engine isn't catching enough duplication, try lowering the threshold. The best setting tends to differ from language to language.

See codeclimate-duplication's documentation for more information about tuning the mass threshold in your .codeclimate.yml.

Refactorings

Further Reading

Identical blocks of code found in 3 locations. Consider refactoring.
Open

    if pad is True:
        dx = _round_to_even(np.sqrt(ox * ox + oz * oz) + 2)
    elif pad is False:
        dx = ox
Severity: Major
Found in source/tomopy/sim/project.py and 2 other locations - About 3 hrs to fix
source/tomopy/sim/project.py on lines 381..384
source/tomopy/sim/project.py on lines 448..451

Duplicated Code

Duplicated code can lead to software that is hard to understand and difficult to change. The Don't Repeat Yourself (DRY) principle states:

Every piece of knowledge must have a single, unambiguous, authoritative representation within a system.

When you violate DRY, bugs and maintenance problems are sure to follow. Duplicated code has a tendency to both continue to replicate and also to diverge (leaving bugs as two similar implementations differ in subtle ways).

Tuning

This issue has a mass of 65.

We set useful threshold defaults for the languages we support but you may want to adjust these settings based on your project guidelines.

The threshold configuration represents the minimum mass a code block must have to be analyzed for duplication. The lower the threshold, the more fine-grained the comparison.

If the engine is too easily reporting duplication, try raising the threshold. If you suspect that the engine isn't catching enough duplication, try lowering the threshold. The best setting tends to differ from language to language.

See codeclimate-duplication's documentation for more information about tuning the mass threshold in your .codeclimate.yml.

Refactorings

Further Reading

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