tomopy/tomopy

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Showing 178 of 354 total issues

Similar blocks of code found in 6 locations. Consider refactoring.
Open

def checkerboard(size=512, dtype='float32'):
    """
    Load test checkerboard image array.

    Parameters
Severity: Major
Found in source/tomopy/misc/phantom.py and 5 other locations - About 5 hrs to fix
source/tomopy/misc/phantom.py on lines 119..142
source/tomopy/misc/phantom.py on lines 145..168
source/tomopy/misc/phantom.py on lines 197..220
source/tomopy/misc/phantom.py on lines 223..246
source/tomopy/misc/phantom.py on lines 249..272

Duplicated Code

Duplicated code can lead to software that is hard to understand and difficult to change. The Don't Repeat Yourself (DRY) principle states:

Every piece of knowledge must have a single, unambiguous, authoritative representation within a system.

When you violate DRY, bugs and maintenance problems are sure to follow. Duplicated code has a tendency to both continue to replicate and also to diverge (leaving bugs as two similar implementations differ in subtle ways).

Tuning

This issue has a mass of 95.

We set useful threshold defaults for the languages we support but you may want to adjust these settings based on your project guidelines.

The threshold configuration represents the minimum mass a code block must have to be analyzed for duplication. The lower the threshold, the more fine-grained the comparison.

If the engine is too easily reporting duplication, try raising the threshold. If you suspect that the engine isn't catching enough duplication, try lowering the threshold. The best setting tends to differ from language to language.

See codeclimate-duplication's documentation for more information about tuning the mass threshold in your .codeclimate.yml.

Refactorings

Further Reading

Similar blocks of code found in 6 locations. Consider refactoring.
Open

def barbara(size=512, dtype='float32'):
    """
    Load test Barbara image array.

    Parameters
Severity: Major
Found in source/tomopy/misc/phantom.py and 5 other locations - About 5 hrs to fix
source/tomopy/misc/phantom.py on lines 145..168
source/tomopy/misc/phantom.py on lines 171..194
source/tomopy/misc/phantom.py on lines 197..220
source/tomopy/misc/phantom.py on lines 223..246
source/tomopy/misc/phantom.py on lines 249..272

Duplicated Code

Duplicated code can lead to software that is hard to understand and difficult to change. The Don't Repeat Yourself (DRY) principle states:

Every piece of knowledge must have a single, unambiguous, authoritative representation within a system.

When you violate DRY, bugs and maintenance problems are sure to follow. Duplicated code has a tendency to both continue to replicate and also to diverge (leaving bugs as two similar implementations differ in subtle ways).

Tuning

This issue has a mass of 95.

We set useful threshold defaults for the languages we support but you may want to adjust these settings based on your project guidelines.

The threshold configuration represents the minimum mass a code block must have to be analyzed for duplication. The lower the threshold, the more fine-grained the comparison.

If the engine is too easily reporting duplication, try raising the threshold. If you suspect that the engine isn't catching enough duplication, try lowering the threshold. The best setting tends to differ from language to language.

See codeclimate-duplication's documentation for more information about tuning the mass threshold in your .codeclimate.yml.

Refactorings

Further Reading

Similar blocks of code found in 6 locations. Consider refactoring.
Open

def lena(size=512, dtype='float32'):
    """
    Load test Lena image array.

    Parameters
Severity: Major
Found in source/tomopy/misc/phantom.py and 5 other locations - About 5 hrs to fix
source/tomopy/misc/phantom.py on lines 119..142
source/tomopy/misc/phantom.py on lines 145..168
source/tomopy/misc/phantom.py on lines 171..194
source/tomopy/misc/phantom.py on lines 223..246
source/tomopy/misc/phantom.py on lines 249..272

Duplicated Code

Duplicated code can lead to software that is hard to understand and difficult to change. The Don't Repeat Yourself (DRY) principle states:

Every piece of knowledge must have a single, unambiguous, authoritative representation within a system.

When you violate DRY, bugs and maintenance problems are sure to follow. Duplicated code has a tendency to both continue to replicate and also to diverge (leaving bugs as two similar implementations differ in subtle ways).

Tuning

This issue has a mass of 95.

We set useful threshold defaults for the languages we support but you may want to adjust these settings based on your project guidelines.

The threshold configuration represents the minimum mass a code block must have to be analyzed for duplication. The lower the threshold, the more fine-grained the comparison.

If the engine is too easily reporting duplication, try raising the threshold. If you suspect that the engine isn't catching enough duplication, try lowering the threshold. The best setting tends to differ from language to language.

See codeclimate-duplication's documentation for more information about tuning the mass threshold in your .codeclimate.yml.

Refactorings

Further Reading

Similar blocks of code found in 4 locations. Consider refactoring.
Open

def c_median_filt3d_float32(
    input,
    output,
    kernel_half_size,
    absdif,
Severity: Major
Found in source/tomopy/util/extern/misc.py and 3 other locations - About 5 hrs to fix
source/tomopy/util/extern/misc.py on lines 69..90
source/tomopy/util/extern/misc.py on lines 139..160
source/tomopy/util/extern/prep.py on lines 102..123

Duplicated Code

Duplicated code can lead to software that is hard to understand and difficult to change. The Don't Repeat Yourself (DRY) principle states:

Every piece of knowledge must have a single, unambiguous, authoritative representation within a system.

When you violate DRY, bugs and maintenance problems are sure to follow. Duplicated code has a tendency to both continue to replicate and also to diverge (leaving bugs as two similar implementations differ in subtle ways).

Tuning

This issue has a mass of 93.

We set useful threshold defaults for the languages we support but you may want to adjust these settings based on your project guidelines.

The threshold configuration represents the minimum mass a code block must have to be analyzed for duplication. The lower the threshold, the more fine-grained the comparison.

If the engine is too easily reporting duplication, try raising the threshold. If you suspect that the engine isn't catching enough duplication, try lowering the threshold. The best setting tends to differ from language to language.

See codeclimate-duplication's documentation for more information about tuning the mass threshold in your .codeclimate.yml.

Refactorings

Further Reading

Similar blocks of code found in 4 locations. Consider refactoring.
Open

def c_sample(
    mode,
    arr,
    dx,
    dy,
Severity: Major
Found in source/tomopy/util/extern/misc.py and 3 other locations - About 5 hrs to fix
source/tomopy/util/extern/misc.py on lines 115..136
source/tomopy/util/extern/misc.py on lines 139..160
source/tomopy/util/extern/prep.py on lines 102..123

Duplicated Code

Duplicated code can lead to software that is hard to understand and difficult to change. The Don't Repeat Yourself (DRY) principle states:

Every piece of knowledge must have a single, unambiguous, authoritative representation within a system.

When you violate DRY, bugs and maintenance problems are sure to follow. Duplicated code has a tendency to both continue to replicate and also to diverge (leaving bugs as two similar implementations differ in subtle ways).

Tuning

This issue has a mass of 93.

We set useful threshold defaults for the languages we support but you may want to adjust these settings based on your project guidelines.

The threshold configuration represents the minimum mass a code block must have to be analyzed for duplication. The lower the threshold, the more fine-grained the comparison.

If the engine is too easily reporting duplication, try raising the threshold. If you suspect that the engine isn't catching enough duplication, try lowering the threshold. The best setting tends to differ from language to language.

See codeclimate-duplication's documentation for more information about tuning the mass threshold in your .codeclimate.yml.

Refactorings

Further Reading

Similar blocks of code found in 4 locations. Consider refactoring.
Open

def c_stripes_detect3d(
    input,
    output,
    size,
    radius,
Severity: Major
Found in source/tomopy/util/extern/prep.py and 3 other locations - About 5 hrs to fix
source/tomopy/util/extern/misc.py on lines 69..90
source/tomopy/util/extern/misc.py on lines 115..136
source/tomopy/util/extern/misc.py on lines 139..160

Duplicated Code

Duplicated code can lead to software that is hard to understand and difficult to change. The Don't Repeat Yourself (DRY) principle states:

Every piece of knowledge must have a single, unambiguous, authoritative representation within a system.

When you violate DRY, bugs and maintenance problems are sure to follow. Duplicated code has a tendency to both continue to replicate and also to diverge (leaving bugs as two similar implementations differ in subtle ways).

Tuning

This issue has a mass of 93.

We set useful threshold defaults for the languages we support but you may want to adjust these settings based on your project guidelines.

The threshold configuration represents the minimum mass a code block must have to be analyzed for duplication. The lower the threshold, the more fine-grained the comparison.

If the engine is too easily reporting duplication, try raising the threshold. If you suspect that the engine isn't catching enough duplication, try lowering the threshold. The best setting tends to differ from language to language.

See codeclimate-duplication's documentation for more information about tuning the mass threshold in your .codeclimate.yml.

Refactorings

Further Reading

Similar blocks of code found in 4 locations. Consider refactoring.
Open

def c_median_filt3d_uint16(
    input,
    output,
    kernel_half_size,
    absdif,
Severity: Major
Found in source/tomopy/util/extern/misc.py and 3 other locations - About 5 hrs to fix
source/tomopy/util/extern/misc.py on lines 69..90
source/tomopy/util/extern/misc.py on lines 115..136
source/tomopy/util/extern/prep.py on lines 102..123

Duplicated Code

Duplicated code can lead to software that is hard to understand and difficult to change. The Don't Repeat Yourself (DRY) principle states:

Every piece of knowledge must have a single, unambiguous, authoritative representation within a system.

When you violate DRY, bugs and maintenance problems are sure to follow. Duplicated code has a tendency to both continue to replicate and also to diverge (leaving bugs as two similar implementations differ in subtle ways).

Tuning

This issue has a mass of 93.

We set useful threshold defaults for the languages we support but you may want to adjust these settings based on your project guidelines.

The threshold configuration represents the minimum mass a code block must have to be analyzed for duplication. The lower the threshold, the more fine-grained the comparison.

If the engine is too easily reporting duplication, try raising the threshold. If you suspect that the engine isn't catching enough duplication, try lowering the threshold. The best setting tends to differ from language to language.

See codeclimate-duplication's documentation for more information about tuning the mass threshold in your .codeclimate.yml.

Refactorings

Further Reading

Similar blocks of code found in 2 locations. Consider refactoring.
Open

    LIB_TOMOPY_RECON.project2(
        dtype.as_c_float_p(objx),
        dtype.as_c_float_p(objy),
        dtype.as_c_int(oy),
        dtype.as_c_int(ox),
Severity: Major
Found in source/tomopy/util/extern/recon.py and 1 other location - About 4 hrs to fix
source/tomopy/util/extern/prep.py on lines 139..150

Duplicated Code

Duplicated code can lead to software that is hard to understand and difficult to change. The Don't Repeat Yourself (DRY) principle states:

Every piece of knowledge must have a single, unambiguous, authoritative representation within a system.

When you violate DRY, bugs and maintenance problems are sure to follow. Duplicated code has a tendency to both continue to replicate and also to diverge (leaving bugs as two similar implementations differ in subtle ways).

Tuning

This issue has a mass of 85.

We set useful threshold defaults for the languages we support but you may want to adjust these settings based on your project guidelines.

The threshold configuration represents the minimum mass a code block must have to be analyzed for duplication. The lower the threshold, the more fine-grained the comparison.

If the engine is too easily reporting duplication, try raising the threshold. If you suspect that the engine isn't catching enough duplication, try lowering the threshold. The best setting tends to differ from language to language.

See codeclimate-duplication's documentation for more information about tuning the mass threshold in your .codeclimate.yml.

Refactorings

Further Reading

Similar blocks of code found in 2 locations. Consider refactoring.
Open

    LIB_TOMOPY_PREP.stripesmask3d_main_float(
        dtype.as_c_float_p(input),
        dtype.as_c_bool_p(output),
        dtype.as_c_float(threshold_val),
        dtype.as_c_int(min_stripe_length),
Severity: Major
Found in source/tomopy/util/extern/prep.py and 1 other location - About 4 hrs to fix
source/tomopy/util/extern/recon.py on lines 140..151

Duplicated Code

Duplicated code can lead to software that is hard to understand and difficult to change. The Don't Repeat Yourself (DRY) principle states:

Every piece of knowledge must have a single, unambiguous, authoritative representation within a system.

When you violate DRY, bugs and maintenance problems are sure to follow. Duplicated code has a tendency to both continue to replicate and also to diverge (leaving bugs as two similar implementations differ in subtle ways).

Tuning

This issue has a mass of 85.

We set useful threshold defaults for the languages we support but you may want to adjust these settings based on your project guidelines.

The threshold configuration represents the minimum mass a code block must have to be analyzed for duplication. The lower the threshold, the more fine-grained the comparison.

If the engine is too easily reporting duplication, try raising the threshold. If you suspect that the engine isn't catching enough duplication, try lowering the threshold. The best setting tends to differ from language to language.

See codeclimate-duplication's documentation for more information about tuning the mass threshold in your .codeclimate.yml.

Refactorings

Further Reading

Similar blocks of code found in 4 locations. Consider refactoring.
Open

    def test_bart(self):
        rng = default_rng(0)
        ind_block = np.arange(len(self.ang))
        rng.shuffle(ind_block)
        assert_allclose(
Severity: Major
Found in test/test_tomopy/test_recon/test_algorithm.py and 3 other locations - About 4 hrs to fix
test/test_tomopy/test_recon/test_algorithm.py on lines 198..211
test/test_tomopy/test_recon/test_algorithm.py on lines 216..229
test/test_tomopy/test_recon/test_algorithm.py on lines 234..247

Duplicated Code

Duplicated code can lead to software that is hard to understand and difficult to change. The Don't Repeat Yourself (DRY) principle states:

Every piece of knowledge must have a single, unambiguous, authoritative representation within a system.

When you violate DRY, bugs and maintenance problems are sure to follow. Duplicated code has a tendency to both continue to replicate and also to diverge (leaving bugs as two similar implementations differ in subtle ways).

Tuning

This issue has a mass of 82.

We set useful threshold defaults for the languages we support but you may want to adjust these settings based on your project guidelines.

The threshold configuration represents the minimum mass a code block must have to be analyzed for duplication. The lower the threshold, the more fine-grained the comparison.

If the engine is too easily reporting duplication, try raising the threshold. If you suspect that the engine isn't catching enough duplication, try lowering the threshold. The best setting tends to differ from language to language.

See codeclimate-duplication's documentation for more information about tuning the mass threshold in your .codeclimate.yml.

Refactorings

Further Reading

Similar blocks of code found in 4 locations. Consider refactoring.
Open

    def test_osem(self):
        rng = default_rng(0)
        ind_block = np.arange(len(self.ang))
        rng.shuffle(ind_block)
        assert_allclose(
Severity: Major
Found in test/test_tomopy/test_recon/test_algorithm.py and 3 other locations - About 4 hrs to fix
test/test_tomopy/test_recon/test_algorithm.py on lines 88..101
test/test_tomopy/test_recon/test_algorithm.py on lines 216..229
test/test_tomopy/test_recon/test_algorithm.py on lines 234..247

Duplicated Code

Duplicated code can lead to software that is hard to understand and difficult to change. The Don't Repeat Yourself (DRY) principle states:

Every piece of knowledge must have a single, unambiguous, authoritative representation within a system.

When you violate DRY, bugs and maintenance problems are sure to follow. Duplicated code has a tendency to both continue to replicate and also to diverge (leaving bugs as two similar implementations differ in subtle ways).

Tuning

This issue has a mass of 82.

We set useful threshold defaults for the languages we support but you may want to adjust these settings based on your project guidelines.

The threshold configuration represents the minimum mass a code block must have to be analyzed for duplication. The lower the threshold, the more fine-grained the comparison.

If the engine is too easily reporting duplication, try raising the threshold. If you suspect that the engine isn't catching enough duplication, try lowering the threshold. The best setting tends to differ from language to language.

See codeclimate-duplication's documentation for more information about tuning the mass threshold in your .codeclimate.yml.

Refactorings

Further Reading

Similar blocks of code found in 4 locations. Consider refactoring.
Open

    def test_ospml_quad(self):
        rng = default_rng(0)
        ind_block = np.arange(len(self.ang))
        rng.shuffle(ind_block)
        assert_allclose(
Severity: Major
Found in test/test_tomopy/test_recon/test_algorithm.py and 3 other locations - About 4 hrs to fix
test/test_tomopy/test_recon/test_algorithm.py on lines 88..101
test/test_tomopy/test_recon/test_algorithm.py on lines 198..211
test/test_tomopy/test_recon/test_algorithm.py on lines 216..229

Duplicated Code

Duplicated code can lead to software that is hard to understand and difficult to change. The Don't Repeat Yourself (DRY) principle states:

Every piece of knowledge must have a single, unambiguous, authoritative representation within a system.

When you violate DRY, bugs and maintenance problems are sure to follow. Duplicated code has a tendency to both continue to replicate and also to diverge (leaving bugs as two similar implementations differ in subtle ways).

Tuning

This issue has a mass of 82.

We set useful threshold defaults for the languages we support but you may want to adjust these settings based on your project guidelines.

The threshold configuration represents the minimum mass a code block must have to be analyzed for duplication. The lower the threshold, the more fine-grained the comparison.

If the engine is too easily reporting duplication, try raising the threshold. If you suspect that the engine isn't catching enough duplication, try lowering the threshold. The best setting tends to differ from language to language.

See codeclimate-duplication's documentation for more information about tuning the mass threshold in your .codeclimate.yml.

Refactorings

Further Reading

Similar blocks of code found in 4 locations. Consider refactoring.
Open

    def test_ospml_hybrid(self):
        rng = default_rng(0)
        ind_block = np.arange(len(self.ang))
        rng.shuffle(ind_block)
        assert_allclose(
Severity: Major
Found in test/test_tomopy/test_recon/test_algorithm.py and 3 other locations - About 4 hrs to fix
test/test_tomopy/test_recon/test_algorithm.py on lines 88..101
test/test_tomopy/test_recon/test_algorithm.py on lines 198..211
test/test_tomopy/test_recon/test_algorithm.py on lines 234..247

Duplicated Code

Duplicated code can lead to software that is hard to understand and difficult to change. The Don't Repeat Yourself (DRY) principle states:

Every piece of knowledge must have a single, unambiguous, authoritative representation within a system.

When you violate DRY, bugs and maintenance problems are sure to follow. Duplicated code has a tendency to both continue to replicate and also to diverge (leaving bugs as two similar implementations differ in subtle ways).

Tuning

This issue has a mass of 82.

We set useful threshold defaults for the languages we support but you may want to adjust these settings based on your project guidelines.

The threshold configuration represents the minimum mass a code block must have to be analyzed for duplication. The lower the threshold, the more fine-grained the comparison.

If the engine is too easily reporting duplication, try raising the threshold. If you suspect that the engine isn't catching enough duplication, try lowering the threshold. The best setting tends to differ from language to language.

See codeclimate-duplication's documentation for more information about tuning the mass threshold in your .codeclimate.yml.

Refactorings

Further Reading

Identical blocks of code found in 2 locations. Consider refactoring.
Open

    if len(listxmiss) > 0:
        matxmiss, maty = np.meshgrid(listxmiss, listy)
        output = finter.ev(np.ndarray.flatten(maty),
                           np.ndarray.flatten(matxmiss))
        sinogram[:, listxmiss] = output.reshape(matxmiss.shape)
Severity: Major
Found in source/tomopy/prep/stripe.py and 1 other location - About 4 hrs to fix
source/tomopy/prep/stripe.py on lines 829..833

Duplicated Code

Duplicated code can lead to software that is hard to understand and difficult to change. The Don't Repeat Yourself (DRY) principle states:

Every piece of knowledge must have a single, unambiguous, authoritative representation within a system.

When you violate DRY, bugs and maintenance problems are sure to follow. Duplicated code has a tendency to both continue to replicate and also to diverge (leaving bugs as two similar implementations differ in subtle ways).

Tuning

This issue has a mass of 79.

We set useful threshold defaults for the languages we support but you may want to adjust these settings based on your project guidelines.

The threshold configuration represents the minimum mass a code block must have to be analyzed for duplication. The lower the threshold, the more fine-grained the comparison.

If the engine is too easily reporting duplication, try raising the threshold. If you suspect that the engine isn't catching enough duplication, try lowering the threshold. The best setting tends to differ from language to language.

See codeclimate-duplication's documentation for more information about tuning the mass threshold in your .codeclimate.yml.

Refactorings

Further Reading

Identical blocks of code found in 2 locations. Consider refactoring.
Open

    if len(listxmiss) > 0:
        matxmiss, maty = np.meshgrid(listxmiss, listy)
        output = finter.ev(np.ndarray.flatten(maty),
                           np.ndarray.flatten(matxmiss))
        sinogram[:, listxmiss] = output.reshape(matxmiss.shape)
Severity: Major
Found in source/tomopy/prep/stripe.py and 1 other location - About 4 hrs to fix
source/tomopy/prep/stripe.py on lines 973..977

Duplicated Code

Duplicated code can lead to software that is hard to understand and difficult to change. The Don't Repeat Yourself (DRY) principle states:

Every piece of knowledge must have a single, unambiguous, authoritative representation within a system.

When you violate DRY, bugs and maintenance problems are sure to follow. Duplicated code has a tendency to both continue to replicate and also to diverge (leaving bugs as two similar implementations differ in subtle ways).

Tuning

This issue has a mass of 79.

We set useful threshold defaults for the languages we support but you may want to adjust these settings based on your project guidelines.

The threshold configuration represents the minimum mass a code block must have to be analyzed for duplication. The lower the threshold, the more fine-grained the comparison.

If the engine is too easily reporting duplication, try raising the threshold. If you suspect that the engine isn't catching enough duplication, try lowering the threshold. The best setting tends to differ from language to language.

See codeclimate-duplication's documentation for more information about tuning the mass threshold in your .codeclimate.yml.

Refactorings

Further Reading

Similar blocks of code found in 2 locations. Consider refactoring.
Open

    LIB_TOMOPY_MISC.Inpainter_morph_main(
        dtype.as_c_float_p(input),
        dtype.as_c_bool_p(mask),
        dtype.as_c_float_p(output),
        dtype.as_c_int(iterations),
Severity: Major
Found in source/tomopy/util/extern/misc.py and 1 other location - About 4 hrs to fix
source/tomopy/util/extern/recon.py on lines 106..116

Duplicated Code

Duplicated code can lead to software that is hard to understand and difficult to change. The Don't Repeat Yourself (DRY) principle states:

Every piece of knowledge must have a single, unambiguous, authoritative representation within a system.

When you violate DRY, bugs and maintenance problems are sure to follow. Duplicated code has a tendency to both continue to replicate and also to diverge (leaving bugs as two similar implementations differ in subtle ways).

Tuning

This issue has a mass of 78.

We set useful threshold defaults for the languages we support but you may want to adjust these settings based on your project guidelines.

The threshold configuration represents the minimum mass a code block must have to be analyzed for duplication. The lower the threshold, the more fine-grained the comparison.

If the engine is too easily reporting duplication, try raising the threshold. If you suspect that the engine isn't catching enough duplication, try lowering the threshold. The best setting tends to differ from language to language.

See codeclimate-duplication's documentation for more information about tuning the mass threshold in your .codeclimate.yml.

Refactorings

Further Reading

Similar blocks of code found in 2 locations. Consider refactoring.
Open

    LIB_TOMOPY_RECON.project(
        dtype.as_c_float_p(obj),
        dtype.as_c_int(oy),
        dtype.as_c_int(ox),
        dtype.as_c_int(oz),
Severity: Major
Found in source/tomopy/util/extern/recon.py and 1 other location - About 4 hrs to fix
source/tomopy/util/extern/misc.py on lines 176..186

Duplicated Code

Duplicated code can lead to software that is hard to understand and difficult to change. The Don't Repeat Yourself (DRY) principle states:

Every piece of knowledge must have a single, unambiguous, authoritative representation within a system.

When you violate DRY, bugs and maintenance problems are sure to follow. Duplicated code has a tendency to both continue to replicate and also to diverge (leaving bugs as two similar implementations differ in subtle ways).

Tuning

This issue has a mass of 78.

We set useful threshold defaults for the languages we support but you may want to adjust these settings based on your project guidelines.

The threshold configuration represents the minimum mass a code block must have to be analyzed for duplication. The lower the threshold, the more fine-grained the comparison.

If the engine is too easily reporting duplication, try raising the threshold. If you suspect that the engine isn't catching enough duplication, try lowering the threshold. The best setting tends to differ from language to language.

See codeclimate-duplication's documentation for more information about tuning the mass threshold in your .codeclimate.yml.

Refactorings

Further Reading

Similar blocks of code found in 7 locations. Consider refactoring.
Open

    def test_cameraman(self):
        assert_equals(cameraman().dtype, 'float32')
        assert_equals(cameraman().shape, (1, 512, 512))
        assert_equals(cameraman(size=(128, 256)).shape, (1, 128, 256))
        assert_equals(cameraman(size=64).shape, (1, 64, 64))
Severity: Major
Found in test/test_tomopy/test_misc/test_phantom.py and 6 other locations - About 4 hrs to fix
test/test_tomopy/test_misc/test_phantom.py on lines 63..67
test/test_tomopy/test_misc/test_phantom.py on lines 69..73
test/test_tomopy/test_misc/test_phantom.py on lines 81..85
test/test_tomopy/test_misc/test_phantom.py on lines 87..91
test/test_tomopy/test_misc/test_phantom.py on lines 93..97
test/test_tomopy/test_misc/test_phantom.py on lines 99..103

Duplicated Code

Duplicated code can lead to software that is hard to understand and difficult to change. The Don't Repeat Yourself (DRY) principle states:

Every piece of knowledge must have a single, unambiguous, authoritative representation within a system.

When you violate DRY, bugs and maintenance problems are sure to follow. Duplicated code has a tendency to both continue to replicate and also to diverge (leaving bugs as two similar implementations differ in subtle ways).

Tuning

This issue has a mass of 77.

We set useful threshold defaults for the languages we support but you may want to adjust these settings based on your project guidelines.

The threshold configuration represents the minimum mass a code block must have to be analyzed for duplication. The lower the threshold, the more fine-grained the comparison.

If the engine is too easily reporting duplication, try raising the threshold. If you suspect that the engine isn't catching enough duplication, try lowering the threshold. The best setting tends to differ from language to language.

See codeclimate-duplication's documentation for more information about tuning the mass threshold in your .codeclimate.yml.

Refactorings

Further Reading

Similar blocks of code found in 7 locations. Consider refactoring.
Open

    def test_baboon(self):
        assert_equals(baboon().dtype, 'float32')
        assert_equals(baboon().shape, (1, 512, 512))
        assert_equals(baboon(size=(128, 256)).shape, (1, 128, 256))
        assert_equals(baboon(size=64).shape, (1, 64, 64))
Severity: Major
Found in test/test_tomopy/test_misc/test_phantom.py and 6 other locations - About 4 hrs to fix
test/test_tomopy/test_misc/test_phantom.py on lines 69..73
test/test_tomopy/test_misc/test_phantom.py on lines 75..79
test/test_tomopy/test_misc/test_phantom.py on lines 81..85
test/test_tomopy/test_misc/test_phantom.py on lines 87..91
test/test_tomopy/test_misc/test_phantom.py on lines 93..97
test/test_tomopy/test_misc/test_phantom.py on lines 99..103

Duplicated Code

Duplicated code can lead to software that is hard to understand and difficult to change. The Don't Repeat Yourself (DRY) principle states:

Every piece of knowledge must have a single, unambiguous, authoritative representation within a system.

When you violate DRY, bugs and maintenance problems are sure to follow. Duplicated code has a tendency to both continue to replicate and also to diverge (leaving bugs as two similar implementations differ in subtle ways).

Tuning

This issue has a mass of 77.

We set useful threshold defaults for the languages we support but you may want to adjust these settings based on your project guidelines.

The threshold configuration represents the minimum mass a code block must have to be analyzed for duplication. The lower the threshold, the more fine-grained the comparison.

If the engine is too easily reporting duplication, try raising the threshold. If you suspect that the engine isn't catching enough duplication, try lowering the threshold. The best setting tends to differ from language to language.

See codeclimate-duplication's documentation for more information about tuning the mass threshold in your .codeclimate.yml.

Refactorings

Further Reading

Similar blocks of code found in 7 locations. Consider refactoring.
Open

    def test_barbara(self):
        assert_equals(barbara().dtype, 'float32')
        assert_equals(barbara().shape, (1, 512, 512))
        assert_equals(barbara(size=(128, 256)).shape, (1, 128, 256))
        assert_equals(barbara(size=64).shape, (1, 64, 64))
Severity: Major
Found in test/test_tomopy/test_misc/test_phantom.py and 6 other locations - About 4 hrs to fix
test/test_tomopy/test_misc/test_phantom.py on lines 63..67
test/test_tomopy/test_misc/test_phantom.py on lines 75..79
test/test_tomopy/test_misc/test_phantom.py on lines 81..85
test/test_tomopy/test_misc/test_phantom.py on lines 87..91
test/test_tomopy/test_misc/test_phantom.py on lines 93..97
test/test_tomopy/test_misc/test_phantom.py on lines 99..103

Duplicated Code

Duplicated code can lead to software that is hard to understand and difficult to change. The Don't Repeat Yourself (DRY) principle states:

Every piece of knowledge must have a single, unambiguous, authoritative representation within a system.

When you violate DRY, bugs and maintenance problems are sure to follow. Duplicated code has a tendency to both continue to replicate and also to diverge (leaving bugs as two similar implementations differ in subtle ways).

Tuning

This issue has a mass of 77.

We set useful threshold defaults for the languages we support but you may want to adjust these settings based on your project guidelines.

The threshold configuration represents the minimum mass a code block must have to be analyzed for duplication. The lower the threshold, the more fine-grained the comparison.

If the engine is too easily reporting duplication, try raising the threshold. If you suspect that the engine isn't catching enough duplication, try lowering the threshold. The best setting tends to differ from language to language.

See codeclimate-duplication's documentation for more information about tuning the mass threshold in your .codeclimate.yml.

Refactorings

Further Reading

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