tomopy/tomopy

View on GitHub
test/test_tomopy/test_recon/test_algorithm.py

Summary

Maintainability
F
5 days
Test Coverage

Similar blocks of code found in 4 locations. Consider refactoring.
Open

    def test_ospml_hybrid(self):
        rng = default_rng(0)
        ind_block = np.arange(len(self.ang))
        rng.shuffle(ind_block)
        assert_allclose(
Severity: Major
Found in test/test_tomopy/test_recon/test_algorithm.py and 3 other locations - About 4 hrs to fix
test/test_tomopy/test_recon/test_algorithm.py on lines 88..101
test/test_tomopy/test_recon/test_algorithm.py on lines 200..213
test/test_tomopy/test_recon/test_algorithm.py on lines 236..249

Duplicated Code

Duplicated code can lead to software that is hard to understand and difficult to change. The Don't Repeat Yourself (DRY) principle states:

Every piece of knowledge must have a single, unambiguous, authoritative representation within a system.

When you violate DRY, bugs and maintenance problems are sure to follow. Duplicated code has a tendency to both continue to replicate and also to diverge (leaving bugs as two similar implementations differ in subtle ways).

Tuning

This issue has a mass of 82.

We set useful threshold defaults for the languages we support but you may want to adjust these settings based on your project guidelines.

The threshold configuration represents the minimum mass a code block must have to be analyzed for duplication. The lower the threshold, the more fine-grained the comparison.

If the engine is too easily reporting duplication, try raising the threshold. If you suspect that the engine isn't catching enough duplication, try lowering the threshold. The best setting tends to differ from language to language.

See codeclimate-duplication's documentation for more information about tuning the mass threshold in your .codeclimate.yml.

Refactorings

Further Reading

Similar blocks of code found in 4 locations. Consider refactoring.
Open

    def test_ospml_quad(self):
        rng = default_rng(0)
        ind_block = np.arange(len(self.ang))
        rng.shuffle(ind_block)
        assert_allclose(
Severity: Major
Found in test/test_tomopy/test_recon/test_algorithm.py and 3 other locations - About 4 hrs to fix
test/test_tomopy/test_recon/test_algorithm.py on lines 88..101
test/test_tomopy/test_recon/test_algorithm.py on lines 200..213
test/test_tomopy/test_recon/test_algorithm.py on lines 218..231

Duplicated Code

Duplicated code can lead to software that is hard to understand and difficult to change. The Don't Repeat Yourself (DRY) principle states:

Every piece of knowledge must have a single, unambiguous, authoritative representation within a system.

When you violate DRY, bugs and maintenance problems are sure to follow. Duplicated code has a tendency to both continue to replicate and also to diverge (leaving bugs as two similar implementations differ in subtle ways).

Tuning

This issue has a mass of 82.

We set useful threshold defaults for the languages we support but you may want to adjust these settings based on your project guidelines.

The threshold configuration represents the minimum mass a code block must have to be analyzed for duplication. The lower the threshold, the more fine-grained the comparison.

If the engine is too easily reporting duplication, try raising the threshold. If you suspect that the engine isn't catching enough duplication, try lowering the threshold. The best setting tends to differ from language to language.

See codeclimate-duplication's documentation for more information about tuning the mass threshold in your .codeclimate.yml.

Refactorings

Further Reading

Similar blocks of code found in 4 locations. Consider refactoring.
Open

    def test_bart(self):
        rng = default_rng(0)
        ind_block = np.arange(len(self.ang))
        rng.shuffle(ind_block)
        assert_allclose(
Severity: Major
Found in test/test_tomopy/test_recon/test_algorithm.py and 3 other locations - About 4 hrs to fix
test/test_tomopy/test_recon/test_algorithm.py on lines 200..213
test/test_tomopy/test_recon/test_algorithm.py on lines 218..231
test/test_tomopy/test_recon/test_algorithm.py on lines 236..249

Duplicated Code

Duplicated code can lead to software that is hard to understand and difficult to change. The Don't Repeat Yourself (DRY) principle states:

Every piece of knowledge must have a single, unambiguous, authoritative representation within a system.

When you violate DRY, bugs and maintenance problems are sure to follow. Duplicated code has a tendency to both continue to replicate and also to diverge (leaving bugs as two similar implementations differ in subtle ways).

Tuning

This issue has a mass of 82.

We set useful threshold defaults for the languages we support but you may want to adjust these settings based on your project guidelines.

The threshold configuration represents the minimum mass a code block must have to be analyzed for duplication. The lower the threshold, the more fine-grained the comparison.

If the engine is too easily reporting duplication, try raising the threshold. If you suspect that the engine isn't catching enough duplication, try lowering the threshold. The best setting tends to differ from language to language.

See codeclimate-duplication's documentation for more information about tuning the mass threshold in your .codeclimate.yml.

Refactorings

Further Reading

Similar blocks of code found in 4 locations. Consider refactoring.
Open

    def test_osem(self):
        rng = default_rng(0)
        ind_block = np.arange(len(self.ang))
        rng.shuffle(ind_block)
        assert_allclose(
Severity: Major
Found in test/test_tomopy/test_recon/test_algorithm.py and 3 other locations - About 4 hrs to fix
test/test_tomopy/test_recon/test_algorithm.py on lines 88..101
test/test_tomopy/test_recon/test_algorithm.py on lines 218..231
test/test_tomopy/test_recon/test_algorithm.py on lines 236..249

Duplicated Code

Duplicated code can lead to software that is hard to understand and difficult to change. The Don't Repeat Yourself (DRY) principle states:

Every piece of knowledge must have a single, unambiguous, authoritative representation within a system.

When you violate DRY, bugs and maintenance problems are sure to follow. Duplicated code has a tendency to both continue to replicate and also to diverge (leaving bugs as two similar implementations differ in subtle ways).

Tuning

This issue has a mass of 82.

We set useful threshold defaults for the languages we support but you may want to adjust these settings based on your project guidelines.

The threshold configuration represents the minimum mass a code block must have to be analyzed for duplication. The lower the threshold, the more fine-grained the comparison.

If the engine is too easily reporting duplication, try raising the threshold. If you suspect that the engine isn't catching enough duplication, try lowering the threshold. The best setting tends to differ from language to language.

See codeclimate-duplication's documentation for more information about tuning the mass threshold in your .codeclimate.yml.

Refactorings

Further Reading

Similar blocks of code found in 2 locations. Consider refactoring.
Open

    @unittest.skipUnless("CUDA_VERSION" in os.environ, "CUDA_VERSION not set.")
    def test_mlem_gpu(self):
        result = recon(self.prj,
                       self.ang,
                       algorithm='mlem',
Severity: Major
Found in test/test_tomopy/test_recon/test_algorithm.py and 1 other location - About 3 hrs to fix
test/test_tomopy/test_recon/test_algorithm.py on lines 284..294

Duplicated Code

Duplicated code can lead to software that is hard to understand and difficult to change. The Don't Repeat Yourself (DRY) principle states:

Every piece of knowledge must have a single, unambiguous, authoritative representation within a system.

When you violate DRY, bugs and maintenance problems are sure to follow. Duplicated code has a tendency to both continue to replicate and also to diverge (leaving bugs as two similar implementations differ in subtle ways).

Tuning

This issue has a mass of 72.

We set useful threshold defaults for the languages we support but you may want to adjust these settings based on your project guidelines.

The threshold configuration represents the minimum mass a code block must have to be analyzed for duplication. The lower the threshold, the more fine-grained the comparison.

If the engine is too easily reporting duplication, try raising the threshold. If you suspect that the engine isn't catching enough duplication, try lowering the threshold. The best setting tends to differ from language to language.

See codeclimate-duplication's documentation for more information about tuning the mass threshold in your .codeclimate.yml.

Refactorings

Further Reading

Similar blocks of code found in 2 locations. Consider refactoring.
Open

    @unittest.skipUnless("CUDA_VERSION" in os.environ, "CUDA_VERSION not set.")
    def test_sirt_gpu(self):
        result = recon(self.prj,
                       self.ang,
                       algorithm='sirt',
Severity: Major
Found in test/test_tomopy/test_recon/test_algorithm.py and 1 other location - About 3 hrs to fix
test/test_tomopy/test_recon/test_algorithm.py on lines 188..198

Duplicated Code

Duplicated code can lead to software that is hard to understand and difficult to change. The Don't Repeat Yourself (DRY) principle states:

Every piece of knowledge must have a single, unambiguous, authoritative representation within a system.

When you violate DRY, bugs and maintenance problems are sure to follow. Duplicated code has a tendency to both continue to replicate and also to diverge (leaving bugs as two similar implementations differ in subtle ways).

Tuning

This issue has a mass of 72.

We set useful threshold defaults for the languages we support but you may want to adjust these settings based on your project guidelines.

The threshold configuration represents the minimum mass a code block must have to be analyzed for duplication. The lower the threshold, the more fine-grained the comparison.

If the engine is too easily reporting duplication, try raising the threshold. If you suspect that the engine isn't catching enough duplication, try lowering the threshold. The best setting tends to differ from language to language.

See codeclimate-duplication's documentation for more information about tuning the mass threshold in your .codeclimate.yml.

Refactorings

Further Reading

Similar blocks of code found in 2 locations. Consider refactoring.
Open

    @unittest.skipUnless(found_opencv, "CPU acceleration requires OpenCV.")
    def test_mlem_accel(self):
        result = recon(self.prj,
                       self.ang,
                       algorithm='mlem',
Severity: Major
Found in test/test_tomopy/test_recon/test_algorithm.py and 1 other location - About 3 hrs to fix
test/test_tomopy/test_recon/test_algorithm.py on lines 272..282

Duplicated Code

Duplicated code can lead to software that is hard to understand and difficult to change. The Don't Repeat Yourself (DRY) principle states:

Every piece of knowledge must have a single, unambiguous, authoritative representation within a system.

When you violate DRY, bugs and maintenance problems are sure to follow. Duplicated code has a tendency to both continue to replicate and also to diverge (leaving bugs as two similar implementations differ in subtle ways).

Tuning

This issue has a mass of 64.

We set useful threshold defaults for the languages we support but you may want to adjust these settings based on your project guidelines.

The threshold configuration represents the minimum mass a code block must have to be analyzed for duplication. The lower the threshold, the more fine-grained the comparison.

If the engine is too easily reporting duplication, try raising the threshold. If you suspect that the engine isn't catching enough duplication, try lowering the threshold. The best setting tends to differ from language to language.

See codeclimate-duplication's documentation for more information about tuning the mass threshold in your .codeclimate.yml.

Refactorings

Further Reading

Similar blocks of code found in 2 locations. Consider refactoring.
Open

    @unittest.skipUnless(found_opencv, "CPU acceleration requires OpenCV.")
    def test_sirt_accel(self):
        result = recon(self.prj,
                       self.ang,
                       algorithm='sirt',
Severity: Major
Found in test/test_tomopy/test_recon/test_algorithm.py and 1 other location - About 3 hrs to fix
test/test_tomopy/test_recon/test_algorithm.py on lines 176..186

Duplicated Code

Duplicated code can lead to software that is hard to understand and difficult to change. The Don't Repeat Yourself (DRY) principle states:

Every piece of knowledge must have a single, unambiguous, authoritative representation within a system.

When you violate DRY, bugs and maintenance problems are sure to follow. Duplicated code has a tendency to both continue to replicate and also to diverge (leaving bugs as two similar implementations differ in subtle ways).

Tuning

This issue has a mass of 64.

We set useful threshold defaults for the languages we support but you may want to adjust these settings based on your project guidelines.

The threshold configuration represents the minimum mass a code block must have to be analyzed for duplication. The lower the threshold, the more fine-grained the comparison.

If the engine is too easily reporting duplication, try raising the threshold. If you suspect that the engine isn't catching enough duplication, try lowering the threshold. The best setting tends to differ from language to language.

See codeclimate-duplication's documentation for more information about tuning the mass threshold in your .codeclimate.yml.

Refactorings

Further Reading

Similar blocks of code found in 2 locations. Consider refactoring.
Open

    def test_mlem(self):
        result = recon(self.prj, self.ang, algorithm='mlem', num_iter=4)
        assert_allclose(result, read_file('mlem.npy'), rtol=1e-2)
Severity: Major
Found in test/test_tomopy/test_recon/test_algorithm.py and 1 other location - About 1 hr to fix
test/test_tomopy/test_recon/test_algorithm.py on lines 268..270

Duplicated Code

Duplicated code can lead to software that is hard to understand and difficult to change. The Don't Repeat Yourself (DRY) principle states:

Every piece of knowledge must have a single, unambiguous, authoritative representation within a system.

When you violate DRY, bugs and maintenance problems are sure to follow. Duplicated code has a tendency to both continue to replicate and also to diverge (leaving bugs as two similar implementations differ in subtle ways).

Tuning

This issue has a mass of 43.

We set useful threshold defaults for the languages we support but you may want to adjust these settings based on your project guidelines.

The threshold configuration represents the minimum mass a code block must have to be analyzed for duplication. The lower the threshold, the more fine-grained the comparison.

If the engine is too easily reporting duplication, try raising the threshold. If you suspect that the engine isn't catching enough duplication, try lowering the threshold. The best setting tends to differ from language to language.

See codeclimate-duplication's documentation for more information about tuning the mass threshold in your .codeclimate.yml.

Refactorings

Further Reading

Similar blocks of code found in 2 locations. Consider refactoring.
Open

    def test_sirt(self):
        result = recon(self.prj, self.ang, algorithm='sirt', num_iter=4)
        assert_allclose(result, read_file('sirt.npy'), rtol=1e-2)
Severity: Major
Found in test/test_tomopy/test_recon/test_algorithm.py and 1 other location - About 1 hr to fix
test/test_tomopy/test_recon/test_algorithm.py on lines 172..174

Duplicated Code

Duplicated code can lead to software that is hard to understand and difficult to change. The Don't Repeat Yourself (DRY) principle states:

Every piece of knowledge must have a single, unambiguous, authoritative representation within a system.

When you violate DRY, bugs and maintenance problems are sure to follow. Duplicated code has a tendency to both continue to replicate and also to diverge (leaving bugs as two similar implementations differ in subtle ways).

Tuning

This issue has a mass of 43.

We set useful threshold defaults for the languages we support but you may want to adjust these settings based on your project guidelines.

The threshold configuration represents the minimum mass a code block must have to be analyzed for duplication. The lower the threshold, the more fine-grained the comparison.

If the engine is too easily reporting duplication, try raising the threshold. If you suspect that the engine isn't catching enough duplication, try lowering the threshold. The best setting tends to differ from language to language.

See codeclimate-duplication's documentation for more information about tuning the mass threshold in your .codeclimate.yml.

Refactorings

Further Reading

Similar blocks of code found in 5 locations. Consider refactoring.
Open

    def test_grad(self):
        assert_allclose(recon(self.prj, self.ang, algorithm='grad',
                              num_iter=4),
                        read_file('grad.npy'),
Severity: Major
Found in test/test_tomopy/test_recon/test_algorithm.py and 4 other locations - About 1 hr to fix
test/test_tomopy/test_recon/test_algorithm.py on lines 254..257
test/test_tomopy/test_recon/test_algorithm.py on lines 261..264
test/test_tomopy/test_recon/test_algorithm.py on lines 296..298
test/test_tomopy/test_recon/test_algorithm.py on lines 307..310

Duplicated Code

Duplicated code can lead to software that is hard to understand and difficult to change. The Don't Repeat Yourself (DRY) principle states:

Every piece of knowledge must have a single, unambiguous, authoritative representation within a system.

When you violate DRY, bugs and maintenance problems are sure to follow. Duplicated code has a tendency to both continue to replicate and also to diverge (leaving bugs as two similar implementations differ in subtle ways).

Tuning

This issue has a mass of 38.

We set useful threshold defaults for the languages we support but you may want to adjust these settings based on your project guidelines.

The threshold configuration represents the minimum mass a code block must have to be analyzed for duplication. The lower the threshold, the more fine-grained the comparison.

If the engine is too easily reporting duplication, try raising the threshold. If you suspect that the engine isn't catching enough duplication, try lowering the threshold. The best setting tends to differ from language to language.

See codeclimate-duplication's documentation for more information about tuning the mass threshold in your .codeclimate.yml.

Refactorings

Further Reading

Similar blocks of code found in 5 locations. Consider refactoring.
Open

    def test_pml_quad(self):
        assert_allclose(
            recon(self.prj, self.ang, algorithm='pml_quad', num_iter=4),
            read_file('pml_quad.npy'),
Severity: Major
Found in test/test_tomopy/test_recon/test_algorithm.py and 4 other locations - About 1 hr to fix
test/test_tomopy/test_recon/test_algorithm.py on lines 254..257
test/test_tomopy/test_recon/test_algorithm.py on lines 296..298
test/test_tomopy/test_recon/test_algorithm.py on lines 301..304
test/test_tomopy/test_recon/test_algorithm.py on lines 307..310

Duplicated Code

Duplicated code can lead to software that is hard to understand and difficult to change. The Don't Repeat Yourself (DRY) principle states:

Every piece of knowledge must have a single, unambiguous, authoritative representation within a system.

When you violate DRY, bugs and maintenance problems are sure to follow. Duplicated code has a tendency to both continue to replicate and also to diverge (leaving bugs as two similar implementations differ in subtle ways).

Tuning

This issue has a mass of 38.

We set useful threshold defaults for the languages we support but you may want to adjust these settings based on your project guidelines.

The threshold configuration represents the minimum mass a code block must have to be analyzed for duplication. The lower the threshold, the more fine-grained the comparison.

If the engine is too easily reporting duplication, try raising the threshold. If you suspect that the engine isn't catching enough duplication, try lowering the threshold. The best setting tends to differ from language to language.

See codeclimate-duplication's documentation for more information about tuning the mass threshold in your .codeclimate.yml.

Refactorings

Further Reading

Similar blocks of code found in 5 locations. Consider refactoring.
Open

    def test_pml_hybrid(self):
        assert_allclose(
            recon(self.prj, self.ang, algorithm='pml_hybrid', num_iter=4),
            read_file('pml_hybrid.npy'),
Severity: Major
Found in test/test_tomopy/test_recon/test_algorithm.py and 4 other locations - About 1 hr to fix
test/test_tomopy/test_recon/test_algorithm.py on lines 261..264
test/test_tomopy/test_recon/test_algorithm.py on lines 296..298
test/test_tomopy/test_recon/test_algorithm.py on lines 301..304
test/test_tomopy/test_recon/test_algorithm.py on lines 307..310

Duplicated Code

Duplicated code can lead to software that is hard to understand and difficult to change. The Don't Repeat Yourself (DRY) principle states:

Every piece of knowledge must have a single, unambiguous, authoritative representation within a system.

When you violate DRY, bugs and maintenance problems are sure to follow. Duplicated code has a tendency to both continue to replicate and also to diverge (leaving bugs as two similar implementations differ in subtle ways).

Tuning

This issue has a mass of 38.

We set useful threshold defaults for the languages we support but you may want to adjust these settings based on your project guidelines.

The threshold configuration represents the minimum mass a code block must have to be analyzed for duplication. The lower the threshold, the more fine-grained the comparison.

If the engine is too easily reporting duplication, try raising the threshold. If you suspect that the engine isn't catching enough duplication, try lowering the threshold. The best setting tends to differ from language to language.

See codeclimate-duplication's documentation for more information about tuning the mass threshold in your .codeclimate.yml.

Refactorings

Further Reading

Similar blocks of code found in 5 locations. Consider refactoring.
Open

    def test_tv(self):
        assert_allclose(recon(self.prj, self.ang, algorithm='tv', num_iter=4),
                        read_file('tv.npy'),
Severity: Major
Found in test/test_tomopy/test_recon/test_algorithm.py and 4 other locations - About 1 hr to fix
test/test_tomopy/test_recon/test_algorithm.py on lines 254..257
test/test_tomopy/test_recon/test_algorithm.py on lines 261..264
test/test_tomopy/test_recon/test_algorithm.py on lines 301..304
test/test_tomopy/test_recon/test_algorithm.py on lines 307..310

Duplicated Code

Duplicated code can lead to software that is hard to understand and difficult to change. The Don't Repeat Yourself (DRY) principle states:

Every piece of knowledge must have a single, unambiguous, authoritative representation within a system.

When you violate DRY, bugs and maintenance problems are sure to follow. Duplicated code has a tendency to both continue to replicate and also to diverge (leaving bugs as two similar implementations differ in subtle ways).

Tuning

This issue has a mass of 38.

We set useful threshold defaults for the languages we support but you may want to adjust these settings based on your project guidelines.

The threshold configuration represents the minimum mass a code block must have to be analyzed for duplication. The lower the threshold, the more fine-grained the comparison.

If the engine is too easily reporting duplication, try raising the threshold. If you suspect that the engine isn't catching enough duplication, try lowering the threshold. The best setting tends to differ from language to language.

See codeclimate-duplication's documentation for more information about tuning the mass threshold in your .codeclimate.yml.

Refactorings

Further Reading

Similar blocks of code found in 5 locations. Consider refactoring.
Open

    def test_tikh(self):
        assert_allclose(recon(self.prj, self.ang, algorithm='tikh',
                              num_iter=4),
                        read_file('tikh.npy'),
Severity: Major
Found in test/test_tomopy/test_recon/test_algorithm.py and 4 other locations - About 1 hr to fix
test/test_tomopy/test_recon/test_algorithm.py on lines 254..257
test/test_tomopy/test_recon/test_algorithm.py on lines 261..264
test/test_tomopy/test_recon/test_algorithm.py on lines 296..298
test/test_tomopy/test_recon/test_algorithm.py on lines 301..304

Duplicated Code

Duplicated code can lead to software that is hard to understand and difficult to change. The Don't Repeat Yourself (DRY) principle states:

Every piece of knowledge must have a single, unambiguous, authoritative representation within a system.

When you violate DRY, bugs and maintenance problems are sure to follow. Duplicated code has a tendency to both continue to replicate and also to diverge (leaving bugs as two similar implementations differ in subtle ways).

Tuning

This issue has a mass of 38.

We set useful threshold defaults for the languages we support but you may want to adjust these settings based on your project guidelines.

The threshold configuration represents the minimum mass a code block must have to be analyzed for duplication. The lower the threshold, the more fine-grained the comparison.

If the engine is too easily reporting duplication, try raising the threshold. If you suspect that the engine isn't catching enough duplication, try lowering the threshold. The best setting tends to differ from language to language.

See codeclimate-duplication's documentation for more information about tuning the mass threshold in your .codeclimate.yml.

Refactorings

Further Reading

Similar blocks of code found in 8 locations. Consider refactoring.
Open

        assert_allclose(recon(self.prj,
                              self.ang,
                              algorithm='gridrec',
                              filter_name='hamming'),
                        read_file('gridrec_hamming.npy'),
Severity: Major
Found in test/test_tomopy/test_recon/test_algorithm.py and 7 other locations - About 30 mins to fix
test/test_tomopy/test_recon/test_algorithm.py on lines 123..127
test/test_tomopy/test_recon/test_algorithm.py on lines 129..133
test/test_tomopy/test_recon/test_algorithm.py on lines 135..139
test/test_tomopy/test_recon/test_algorithm.py on lines 141..145
test/test_tomopy/test_recon/test_algorithm.py on lines 153..157
test/test_tomopy/test_recon/test_algorithm.py on lines 159..163
test/test_tomopy/test_recon/test_algorithm.py on lines 165..169

Duplicated Code

Duplicated code can lead to software that is hard to understand and difficult to change. The Don't Repeat Yourself (DRY) principle states:

Every piece of knowledge must have a single, unambiguous, authoritative representation within a system.

When you violate DRY, bugs and maintenance problems are sure to follow. Duplicated code has a tendency to both continue to replicate and also to diverge (leaving bugs as two similar implementations differ in subtle ways).

Tuning

This issue has a mass of 32.

We set useful threshold defaults for the languages we support but you may want to adjust these settings based on your project guidelines.

The threshold configuration represents the minimum mass a code block must have to be analyzed for duplication. The lower the threshold, the more fine-grained the comparison.

If the engine is too easily reporting duplication, try raising the threshold. If you suspect that the engine isn't catching enough duplication, try lowering the threshold. The best setting tends to differ from language to language.

See codeclimate-duplication's documentation for more information about tuning the mass threshold in your .codeclimate.yml.

Refactorings

Further Reading

Similar blocks of code found in 8 locations. Consider refactoring.
Open

        assert_allclose(recon(self.prj,
                              self.ang,
                              algorithm='gridrec',
                              filter_name='cosine'),
                        read_file('gridrec_cosine.npy'),
Severity: Major
Found in test/test_tomopy/test_recon/test_algorithm.py and 7 other locations - About 30 mins to fix
test/test_tomopy/test_recon/test_algorithm.py on lines 123..127
test/test_tomopy/test_recon/test_algorithm.py on lines 129..133
test/test_tomopy/test_recon/test_algorithm.py on lines 141..145
test/test_tomopy/test_recon/test_algorithm.py on lines 147..151
test/test_tomopy/test_recon/test_algorithm.py on lines 153..157
test/test_tomopy/test_recon/test_algorithm.py on lines 159..163
test/test_tomopy/test_recon/test_algorithm.py on lines 165..169

Duplicated Code

Duplicated code can lead to software that is hard to understand and difficult to change. The Don't Repeat Yourself (DRY) principle states:

Every piece of knowledge must have a single, unambiguous, authoritative representation within a system.

When you violate DRY, bugs and maintenance problems are sure to follow. Duplicated code has a tendency to both continue to replicate and also to diverge (leaving bugs as two similar implementations differ in subtle ways).

Tuning

This issue has a mass of 32.

We set useful threshold defaults for the languages we support but you may want to adjust these settings based on your project guidelines.

The threshold configuration represents the minimum mass a code block must have to be analyzed for duplication. The lower the threshold, the more fine-grained the comparison.

If the engine is too easily reporting duplication, try raising the threshold. If you suspect that the engine isn't catching enough duplication, try lowering the threshold. The best setting tends to differ from language to language.

See codeclimate-duplication's documentation for more information about tuning the mass threshold in your .codeclimate.yml.

Refactorings

Further Reading

Similar blocks of code found in 8 locations. Consider refactoring.
Open

        assert_allclose(recon(self.prj,
                              self.ang,
                              algorithm='gridrec',
                              filter_name='none'),
                        read_file('gridrec_none.npy'),
Severity: Major
Found in test/test_tomopy/test_recon/test_algorithm.py and 7 other locations - About 30 mins to fix
test/test_tomopy/test_recon/test_algorithm.py on lines 129..133
test/test_tomopy/test_recon/test_algorithm.py on lines 135..139
test/test_tomopy/test_recon/test_algorithm.py on lines 141..145
test/test_tomopy/test_recon/test_algorithm.py on lines 147..151
test/test_tomopy/test_recon/test_algorithm.py on lines 153..157
test/test_tomopy/test_recon/test_algorithm.py on lines 159..163
test/test_tomopy/test_recon/test_algorithm.py on lines 165..169

Duplicated Code

Duplicated code can lead to software that is hard to understand and difficult to change. The Don't Repeat Yourself (DRY) principle states:

Every piece of knowledge must have a single, unambiguous, authoritative representation within a system.

When you violate DRY, bugs and maintenance problems are sure to follow. Duplicated code has a tendency to both continue to replicate and also to diverge (leaving bugs as two similar implementations differ in subtle ways).

Tuning

This issue has a mass of 32.

We set useful threshold defaults for the languages we support but you may want to adjust these settings based on your project guidelines.

The threshold configuration represents the minimum mass a code block must have to be analyzed for duplication. The lower the threshold, the more fine-grained the comparison.

If the engine is too easily reporting duplication, try raising the threshold. If you suspect that the engine isn't catching enough duplication, try lowering the threshold. The best setting tends to differ from language to language.

See codeclimate-duplication's documentation for more information about tuning the mass threshold in your .codeclimate.yml.

Refactorings

Further Reading

Similar blocks of code found in 8 locations. Consider refactoring.
Open

        assert_allclose(recon(self.prj,
                              self.ang,
                              algorithm='gridrec',
                              filter_name='hann'),
                        read_file('gridrec_hann.npy'),
Severity: Major
Found in test/test_tomopy/test_recon/test_algorithm.py and 7 other locations - About 30 mins to fix
test/test_tomopy/test_recon/test_algorithm.py on lines 123..127
test/test_tomopy/test_recon/test_algorithm.py on lines 129..133
test/test_tomopy/test_recon/test_algorithm.py on lines 135..139
test/test_tomopy/test_recon/test_algorithm.py on lines 147..151
test/test_tomopy/test_recon/test_algorithm.py on lines 153..157
test/test_tomopy/test_recon/test_algorithm.py on lines 159..163
test/test_tomopy/test_recon/test_algorithm.py on lines 165..169

Duplicated Code

Duplicated code can lead to software that is hard to understand and difficult to change. The Don't Repeat Yourself (DRY) principle states:

Every piece of knowledge must have a single, unambiguous, authoritative representation within a system.

When you violate DRY, bugs and maintenance problems are sure to follow. Duplicated code has a tendency to both continue to replicate and also to diverge (leaving bugs as two similar implementations differ in subtle ways).

Tuning

This issue has a mass of 32.

We set useful threshold defaults for the languages we support but you may want to adjust these settings based on your project guidelines.

The threshold configuration represents the minimum mass a code block must have to be analyzed for duplication. The lower the threshold, the more fine-grained the comparison.

If the engine is too easily reporting duplication, try raising the threshold. If you suspect that the engine isn't catching enough duplication, try lowering the threshold. The best setting tends to differ from language to language.

See codeclimate-duplication's documentation for more information about tuning the mass threshold in your .codeclimate.yml.

Refactorings

Further Reading

Similar blocks of code found in 8 locations. Consider refactoring.
Open

        assert_allclose(recon(self.prj,
                              self.ang,
                              algorithm='gridrec',
                              filter_name='butterworth'),
                        read_file('gridrec_butterworth.npy'),
Severity: Major
Found in test/test_tomopy/test_recon/test_algorithm.py and 7 other locations - About 30 mins to fix
test/test_tomopy/test_recon/test_algorithm.py on lines 123..127
test/test_tomopy/test_recon/test_algorithm.py on lines 129..133
test/test_tomopy/test_recon/test_algorithm.py on lines 135..139
test/test_tomopy/test_recon/test_algorithm.py on lines 141..145
test/test_tomopy/test_recon/test_algorithm.py on lines 147..151
test/test_tomopy/test_recon/test_algorithm.py on lines 153..157
test/test_tomopy/test_recon/test_algorithm.py on lines 159..163

Duplicated Code

Duplicated code can lead to software that is hard to understand and difficult to change. The Don't Repeat Yourself (DRY) principle states:

Every piece of knowledge must have a single, unambiguous, authoritative representation within a system.

When you violate DRY, bugs and maintenance problems are sure to follow. Duplicated code has a tendency to both continue to replicate and also to diverge (leaving bugs as two similar implementations differ in subtle ways).

Tuning

This issue has a mass of 32.

We set useful threshold defaults for the languages we support but you may want to adjust these settings based on your project guidelines.

The threshold configuration represents the minimum mass a code block must have to be analyzed for duplication. The lower the threshold, the more fine-grained the comparison.

If the engine is too easily reporting duplication, try raising the threshold. If you suspect that the engine isn't catching enough duplication, try lowering the threshold. The best setting tends to differ from language to language.

See codeclimate-duplication's documentation for more information about tuning the mass threshold in your .codeclimate.yml.

Refactorings

Further Reading

Similar blocks of code found in 8 locations. Consider refactoring.
Open

        assert_allclose(recon(self.prj,
                              self.ang,
                              algorithm='gridrec',
                              filter_name='parzen'),
                        read_file('gridrec_parzen.npy'),
Severity: Major
Found in test/test_tomopy/test_recon/test_algorithm.py and 7 other locations - About 30 mins to fix
test/test_tomopy/test_recon/test_algorithm.py on lines 123..127
test/test_tomopy/test_recon/test_algorithm.py on lines 129..133
test/test_tomopy/test_recon/test_algorithm.py on lines 135..139
test/test_tomopy/test_recon/test_algorithm.py on lines 141..145
test/test_tomopy/test_recon/test_algorithm.py on lines 147..151
test/test_tomopy/test_recon/test_algorithm.py on lines 153..157
test/test_tomopy/test_recon/test_algorithm.py on lines 165..169

Duplicated Code

Duplicated code can lead to software that is hard to understand and difficult to change. The Don't Repeat Yourself (DRY) principle states:

Every piece of knowledge must have a single, unambiguous, authoritative representation within a system.

When you violate DRY, bugs and maintenance problems are sure to follow. Duplicated code has a tendency to both continue to replicate and also to diverge (leaving bugs as two similar implementations differ in subtle ways).

Tuning

This issue has a mass of 32.

We set useful threshold defaults for the languages we support but you may want to adjust these settings based on your project guidelines.

The threshold configuration represents the minimum mass a code block must have to be analyzed for duplication. The lower the threshold, the more fine-grained the comparison.

If the engine is too easily reporting duplication, try raising the threshold. If you suspect that the engine isn't catching enough duplication, try lowering the threshold. The best setting tends to differ from language to language.

See codeclimate-duplication's documentation for more information about tuning the mass threshold in your .codeclimate.yml.

Refactorings

Further Reading

Similar blocks of code found in 8 locations. Consider refactoring.
Open

        assert_allclose(recon(self.prj,
                              self.ang,
                              algorithm='gridrec',
                              filter_name='shepp'),
                        read_file('gridrec_shepp.npy'),
Severity: Major
Found in test/test_tomopy/test_recon/test_algorithm.py and 7 other locations - About 30 mins to fix
test/test_tomopy/test_recon/test_algorithm.py on lines 123..127
test/test_tomopy/test_recon/test_algorithm.py on lines 135..139
test/test_tomopy/test_recon/test_algorithm.py on lines 141..145
test/test_tomopy/test_recon/test_algorithm.py on lines 147..151
test/test_tomopy/test_recon/test_algorithm.py on lines 153..157
test/test_tomopy/test_recon/test_algorithm.py on lines 159..163
test/test_tomopy/test_recon/test_algorithm.py on lines 165..169

Duplicated Code

Duplicated code can lead to software that is hard to understand and difficult to change. The Don't Repeat Yourself (DRY) principle states:

Every piece of knowledge must have a single, unambiguous, authoritative representation within a system.

When you violate DRY, bugs and maintenance problems are sure to follow. Duplicated code has a tendency to both continue to replicate and also to diverge (leaving bugs as two similar implementations differ in subtle ways).

Tuning

This issue has a mass of 32.

We set useful threshold defaults for the languages we support but you may want to adjust these settings based on your project guidelines.

The threshold configuration represents the minimum mass a code block must have to be analyzed for duplication. The lower the threshold, the more fine-grained the comparison.

If the engine is too easily reporting duplication, try raising the threshold. If you suspect that the engine isn't catching enough duplication, try lowering the threshold. The best setting tends to differ from language to language.

See codeclimate-duplication's documentation for more information about tuning the mass threshold in your .codeclimate.yml.

Refactorings

Further Reading

Similar blocks of code found in 8 locations. Consider refactoring.
Open

        assert_allclose(recon(self.prj,
                              self.ang,
                              algorithm='gridrec',
                              filter_name='ramlak'),
                        read_file('gridrec_ramlak.npy'),
Severity: Major
Found in test/test_tomopy/test_recon/test_algorithm.py and 7 other locations - About 30 mins to fix
test/test_tomopy/test_recon/test_algorithm.py on lines 123..127
test/test_tomopy/test_recon/test_algorithm.py on lines 129..133
test/test_tomopy/test_recon/test_algorithm.py on lines 135..139
test/test_tomopy/test_recon/test_algorithm.py on lines 141..145
test/test_tomopy/test_recon/test_algorithm.py on lines 147..151
test/test_tomopy/test_recon/test_algorithm.py on lines 159..163
test/test_tomopy/test_recon/test_algorithm.py on lines 165..169

Duplicated Code

Duplicated code can lead to software that is hard to understand and difficult to change. The Don't Repeat Yourself (DRY) principle states:

Every piece of knowledge must have a single, unambiguous, authoritative representation within a system.

When you violate DRY, bugs and maintenance problems are sure to follow. Duplicated code has a tendency to both continue to replicate and also to diverge (leaving bugs as two similar implementations differ in subtle ways).

Tuning

This issue has a mass of 32.

We set useful threshold defaults for the languages we support but you may want to adjust these settings based on your project guidelines.

The threshold configuration represents the minimum mass a code block must have to be analyzed for duplication. The lower the threshold, the more fine-grained the comparison.

If the engine is too easily reporting duplication, try raising the threshold. If you suspect that the engine isn't catching enough duplication, try lowering the threshold. The best setting tends to differ from language to language.

See codeclimate-duplication's documentation for more information about tuning the mass threshold in your .codeclimate.yml.

Refactorings

Further Reading

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