12
Parser process id: 12
codeclimate-parser socket not present
waiting 1s...
I, [2024-10-31T07:01:11.813252 #1] INFO -- : Skipping file ./peaksql/datasets/narrowpeak.py due to exception (CC::Engine::Analyzers::ParserError): `python2 /usr/src/app/lib/cc/engine/analyzers/python/parser.py` exited with code 1:
Traceback (most recent call last):
File "/usr/src/app/lib/cc/engine/analyzers/python/parser.py", line 51, in <module>
print(json.dumps(to_json(ast.parse(source))))
File "/usr/local/python2/lib/python2.7/ast.py", line 37, in parse
return compile(source, filename, mode, PyCF_ONLY_AST)
File "<unknown>", line 17
database: str,
^
SyntaxError: invalid syntax
I, [2024-10-31T07:01:11.822100 #1] INFO -- : Skipping file ./peaksql/util.py due to exception (CC::Engine::Analyzers::ParserError): `python2 /usr/src/app/lib/cc/engine/analyzers/python/parser.py` exited with code 1:
Traceback (most recent call last):
File "/usr/src/app/lib/cc/engine/analyzers/python/parser.py", line 51, in <module>
print(json.dumps(to_json(ast.parse(source))))
File "/usr/local/python2/lib/python2.7/ast.py", line 37, in parse
return compile(source, filename, mode, PyCF_ONLY_AST)
File "<unknown>", line 7
def _nuc_to_onehot_idx(nuc: int) -> int:
^
SyntaxError: invalid syntax
I, [2024-10-31T07:01:11.827346 #1] INFO -- : Skipping file ./peaksql/datasets/bedregion.py due to exception (CC::Engine::Analyzers::ParserError): `python2 /usr/src/app/lib/cc/engine/analyzers/python/parser.py` exited with code 1:
Traceback (most recent call last):
File "/usr/src/app/lib/cc/engine/analyzers/python/parser.py", line 51, in <module>
print(json.dumps(to_json(ast.parse(source))))
File "/usr/local/python2/lib/python2.7/ast.py", line 37, in parse
return compile(source, filename, mode, PyCF_ONLY_AST)
File "<unknown>", line 19
database: str,
^
SyntaxError: invalid syntax
I, [2024-10-31T07:01:11.836333 #1] INFO -- : Skipping file ./peaksql/datasets/base.py due to exception (CC::Engine::Analyzers::ParserError): `python2 /usr/src/app/lib/cc/engine/analyzers/python/parser.py` exited with code 1:
Traceback (most recent call last):
File "/usr/src/app/lib/cc/engine/analyzers/python/parser.py", line 51, in <module>
print(json.dumps(to_json(ast.parse(source))))
File "/usr/local/python2/lib/python2.7/ast.py", line 37, in parse
return compile(source, filename, mode, PyCF_ONLY_AST)
File "<unknown>", line 21
def __init__(self, database: str, where: str = "", seq_length: int = 200, **kwargs):
^
SyntaxError: invalid syntax
I, [2024-10-31T07:01:11.841808 #1] INFO -- : Skipping file ./peaksql/datasets/bed.py due to exception (CC::Engine::Analyzers::ParserError): `python2 /usr/src/app/lib/cc/engine/analyzers/python/parser.py` exited with code 1:
Traceback (most recent call last):
File "/usr/src/app/lib/cc/engine/analyzers/python/parser.py", line 51, in <module>
print(json.dumps(to_json(ast.parse(source))))
File "/usr/local/python2/lib/python2.7/ast.py", line 37, in parse
return compile(source, filename, mode, PyCF_ONLY_AST)
File "<unknown>", line 17
SELECT_LABEL: str
^
SyntaxError: invalid syntax
I, [2024-10-31T07:01:11.858720 #1] INFO -- : Skipping file ./peaksql/database.py due to exception (CC::Engine::Analyzers::ParserError): `python2 /usr/src/app/lib/cc/engine/analyzers/python/parser.py` exited with code 1:
Traceback (most recent call last):
File "/usr/src/app/lib/cc/engine/analyzers/python/parser.py", line 51, in <module>
print(json.dumps(to_json(ast.parse(source))))
File "/usr/local/python2/lib/python2.7/ast.py", line 37, in parse
return compile(source, filename, mode, PyCF_ONLY_AST)
File "<unknown>", line 22
def __init__(self, db: str = "PeakSQL.sqlite", in_memory: bool = False):
^
SyntaxError: invalid syntax
I, [2024-10-31T07:01:11.870341 #1] INFO -- : Skipping file ./peaksql/tables.py due to exception (CC::Engine::Analyzers::ParserError): `python2 /usr/src/app/lib/cc/engine/analyzers/python/parser.py` exited with code 1:
Traceback (most recent call last):
File "/usr/src/app/lib/cc/engine/analyzers/python/parser.py", line 51, in <module>
print(json.dumps(to_json(ast.parse(source))))
File "/usr/local/python2/lib/python2.7/ast.py", line 37, in parse
return compile(source, filename, mode, PyCF_ONLY_AST)
File "<unknown>", line 49
f"BedVirtual USING rtree("
^
SyntaxError: invalid syntax
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