Function render has 39 lines of code (exceeds 25 allowed). Consider refactoring.

Open

  render: function() {
    this.setName("Export");

    this.addNode("Share view (URL)" + ShareSym, () => {
      return Exporter.shareLink(this.msa, function(link) {

Function getBlocksForRow has 38 lines of code (exceeds 25 allowed). Consider refactoring.

Open

  getBlocksForRow: function(seqId, maxLen) {
    const selis = this.filter(function(el) { return el.inRow(seqId); });
    let blocks = [];
    for (let i = 0, seli; i < selis.length; i++) {
      let seli = selis[i];

Function genConservedSequences has 37 lines of code (exceeds 25 allowed). Consider refactoring.

Open

  genConservedSequences: (len, seqLen, dict) => {
    const seqs = [];
    if (!(typeof len !== "undefined" && len !== null)) { len = BMath.getRandomInt(3,5); }
    if (!(typeof seqLen !== "undefined" && seqLen !== null)) { seqLen = BMath.getRandomInt(50,200); }

Function invertCol has 37 lines of code (exceeds 25 allowed). Consider refactoring.

Open

  invertCol: function(columns) {
    const selColumns = this.where({type:"column"}).reduce((memo,el) => {
      return memo.concat(((() => {
        const result = [];
        let i = el.attributes.xStart;

Function _renderSelection has a Cognitive Complexity of 12 (exceeds 5 allowed). Consider refactoring.

Open

  _renderSelection: function(data) {

    let xZero = data.xZero;
    const yZero = data.yZero;
    const n = data.n;

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Function _onmousemove has a Cognitive Complexity of 12 (exceeds 5 allowed). Consider refactoring.

Open

  _onmousemove: function(e, reversed) {
    if (this.dragStart.length === 0) { return; }

    const dragEnd = mouse.abs(e);
    // relative to first click

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Function render has 34 lines of code (exceeds 25 allowed). Consider refactoring.

Open

  render: function() {
    var gaps = this.g.stats.gaps();

    dom.removeAllChilds(this.el);

Function _appendSelection has 33 lines of code (exceeds 25 allowed). Consider refactoring.

Open

  _appendSelection: function(data) {
    const seq = data.model.get("seq");
    const selection = this._getSelection(data.model);
    // get the status of the upper and lower row
    const getNextPrev= this._getPrevNextSelection(data.model);

Function render has 33 lines of code (exceeds 25 allowed). Consider refactoring.

Open

  render: function() {
    dom.removeAllChilds(this.el);

    const fontSize = this.g.zoomer.get("markerFontsize");
    const cellWidth = this.g.zoomer.get("columnWidth");

Function render has a Cognitive Complexity of 11 (exceeds 5 allowed). Consider refactoring.

Open

  render: function() {
    var gaps = this.g.stats.gaps();

    dom.removeAllChilds(this.el);

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Function joinCb has a Cognitive Complexity of 11 (exceeds 5 allowed). Consider refactoring.

Open

  joinCb: function(retCb, finalLength, finalScope) {
    finalLength = finalLength || 1;
    var cbsFinished = 0;

    var callbackWrapper = function(cb, scope) {

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Function drawFeature has 31 lines of code (exceeds 25 allowed). Consider refactoring.

Open

  drawFeature: function(data) {
    var seq = data.model.get("seq");
    var rectWidth = this.g.zoomer.get("columnWidth");
    var rectHeight = this.g.zoomer.get("rowHeight");

Function _onmousemove has 31 lines of code (exceeds 25 allowed). Consider refactoring.

Open

  _onmousemove: function(e, reversed) {
    if (this.dragStart.length === 0) { return; }

    const dragEnd = mouse.abs(e);
    // relative to first click

Function render has 30 lines of code (exceeds 25 allowed). Consider refactoring.

Open

  render() {
    this.setName("Selection");
    this.addNode("Find Motif (supports RegEx)", () => {
      var search = prompt("your search", "D");
      return this.g.user.set("searchText", search);

Function draw has 30 lines of code (exceeds 25 allowed). Consider refactoring.

Open

  draw: function() {

    this.removeViews();

    this.addView("stage",new Stage({model: this.seqs, g: this.g}));

Function markerHidden has 29 lines of code (exceeds 25 allowed). Consider refactoring.

Open

  markerHidden: function(n,stepSize) {
    const hidden = this.g.columns.get("hidden").slice(0);

    const min = Math.max(0, n - stepSize);
    let prevHidden = true;

Function getAllColumnBlocks has 28 lines of code (exceeds 25 allowed). Consider refactoring.

Open

  getAllColumnBlocks: function(conf) {
    const maxLen = conf.maxLen;
    const withPos = conf.withPos;
    let blocks = [];
    let filtered;

Function render has 28 lines of code (exceeds 25 allowed). Consider refactoring.

Open

  render: function() {
    var msa = this.msa;
    var uploader = k.mk("input");
    uploader.type = "file";
    uploader.style.display = "none";

Function initialize has a Cognitive Complexity of 10 (exceeds 5 allowed). Consider refactoring.

Open

  initialize: function(obj) {
    if ((obj.start != null)) {
      // gff counts from 1 where MSA starts at 0
      // This fix that misalignment
      this.set("xStart", (obj.start-1));

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Function render has a Cognitive Complexity of 10 (exceeds 5 allowed). Consider refactoring.

Open

  render: function() {
    dom.removeAllChilds(this.el);

    const fontSize = this.g.zoomer.get("markerFontsize");
    const cellWidth = this.g.zoomer.get("columnWidth");

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