12
Parser process id: 12
codeclimate-parser socket not present
waiting 1s...
I, [2024-04-22T16:52:10.230810 #1] INFO -- : Skipping file ./scripts/old_myprimer_code.py due to exception (CC::Engine::Analyzers::ParserError): `python2 /usr/src/app/lib/cc/engine/analyzers/python/parser.py` exited with code 1:
Traceback (most recent call last):
File "/usr/src/app/lib/cc/engine/analyzers/python/parser.py", line 51, in <module>
print(json.dumps(to_json(ast.parse(source))))
File "/usr/local/python2/lib/python2.7/ast.py", line 37, in parse
return compile(source, filename, mode, PyCF_ONLY_AST)
File "<unknown>", line 33
raise ValueError(f"key {key} does not exist.")
^
SyntaxError: invalid syntax
I, [2024-04-22T16:52:10.250327 #1] INFO -- : Skipping file ./scripts/predefined_feature_colors.py due to exception (CC::Engine::Analyzers::ParserError): `python2 /usr/src/app/lib/cc/engine/analyzers/python/parser.py` exited with code 1:
Traceback (most recent call last):
File "/usr/src/app/lib/cc/engine/analyzers/python/parser.py", line 51, in <module>
print(json.dumps(to_json(ast.parse(source))))
File "/usr/local/python2/lib/python2.7/ast.py", line 37, in parse
return compile(source, filename, mode, PyCF_ONLY_AST)
File "<unknown>", line 20
colors.append(f"{hex}")
^
SyntaxError: invalid syntax
I, [2024-04-22T16:52:10.548272 #1] INFO -- : Skipping file ./scripts/gui.py due to exception (CC::Engine::Analyzers::ParserError): `python2 /usr/src/app/lib/cc/engine/analyzers/python/parser.py` exited with code 1:
Traceback (most recent call last):
File "/usr/src/app/lib/cc/engine/analyzers/python/parser.py", line 51, in <module>
print(json.dumps(to_json(ast.parse(source))))
File "/usr/local/python2/lib/python2.7/ast.py", line 37, in parse
return compile(source, filename, mode, PyCF_ONLY_AST)
File "<unknown>", line 49
f"{text[:fl.start]}<span style='background-color:#ffff00;'>"
^
SyntaxError: invalid syntax
I, [2024-04-22T16:52:10.725746 #1] INFO -- : Skipping file ./scripts/compare_local_and_gdoc_primer_lists.py due to exception (CC::Engine::Analyzers::ParserError): `python2 /usr/src/app/lib/cc/engine/analyzers/python/parser.py` exited with code 1:
Traceback (most recent call last):
File "/usr/src/app/lib/cc/engine/analyzers/python/parser.py", line 51, in <module>
print(json.dumps(to_json(ast.parse(source))))
File "/usr/local/python2/lib/python2.7/ast.py", line 37, in parse
return compile(source, filename, mode, PyCF_ONLY_AST)
File "<unknown>", line 32
fl = drive.ListFile({"q": f"title = '{title}' and mimeType='{mime}'"}).GetList()
^
SyntaxError: invalid syntax
I, [2024-04-22T16:52:10.795314 #1] INFO -- : Skipping file ./scripts/temp (copy).py due to exception (CC::Engine::Analyzers::ParserError): `python2 /usr/src/app/lib/cc/engine/analyzers/python/parser.py` exited with code 1:
Traceback (most recent call last):
File "/usr/src/app/lib/cc/engine/analyzers/python/parser.py", line 51, in <module>
print(json.dumps(to_json(ast.parse(source))))
File "/usr/local/python2/lib/python2.7/ast.py", line 37, in parse
return compile(source, filename, mode, PyCF_ONLY_AST)
File "<unknown>", line 30
print("SHA1 (bin) :", SHA1_bin[:10] + " .. " + SHA1_bin[-10:] + f" ({len(SHA1_bin)} bits)")
^
SyntaxError: invalid syntax
I, [2024-04-22T16:52:10.824010 #1] INFO -- : Skipping file ./scripts/notebooks_run_all.py due to exception (CC::Engine::Analyzers::ParserError): `python2 /usr/src/app/lib/cc/engine/analyzers/python/parser.py` exited with code 1:
Traceback (most recent call last):
File "/usr/src/app/lib/cc/engine/analyzers/python/parser.py", line 51, in <module>
print(json.dumps(to_json(ast.parse(source))))
File "/usr/local/python2/lib/python2.7/ast.py", line 37, in parse
return compile(source, filename, mode, PyCF_ONLY_AST)
File "<unknown>", line 33
print(colored(dirpath, "blue"), colored(file_, "green"), end="")
^
SyntaxError: invalid syntax
I, [2024-04-22T16:52:10.908393 #1] INFO -- : Skipping file ./scripts/LongestCommonSubstring/lcs.py due to exception (CC::Engine::Analyzers::ParserError): `python2 /usr/src/app/lib/cc/engine/analyzers/python/parser.py` exited with code 1:
Traceback (most recent call last):
File "/usr/src/app/lib/cc/engine/analyzers/python/parser.py", line 51, in <module>
print(json.dumps(to_json(ast.parse(source))))
File "/usr/local/python2/lib/python2.7/ast.py", line 37, in parse
return compile(source, filename, mode, PyCF_ONLY_AST)
File "<unknown>", line 18
size = 100_000
^
SyntaxError: invalid syntax
I, [2024-04-22T16:52:10.934757 #1] INFO -- : Skipping file ./scripts/temp.py due to exception (CC::Engine::Analyzers::ParserError): `python2 /usr/src/app/lib/cc/engine/analyzers/python/parser.py` exited with code 1:
Traceback (most recent call last):
File "/usr/src/app/lib/cc/engine/analyzers/python/parser.py", line 51, in <module>
print(json.dumps(to_json(ast.parse(source))))
File "/usr/local/python2/lib/python2.7/ast.py", line 37, in parse
return compile(source, filename, mode, PyCF_ONLY_AST)
File "<unknown>", line 30
print("SHA1 (bin) :", SHA1_bin[:10] + " .. " + SHA1_bin[-10:] + f" ({len(SHA1_bin)} bits)")
^
SyntaxError: invalid syntax
I, [2024-04-22T16:52:10.952491 #1] INFO -- : Skipping file ./scripts/features/experimental_feature.py due to exception (CC::Engine::Analyzers::ParserError): `python2 /usr/src/app/lib/cc/engine/analyzers/python/parser.py` exited with code 1:
Traceback (most recent call last):
File "/usr/src/app/lib/cc/engine/analyzers/python/parser.py", line 51, in <module>
print(json.dumps(to_json(ast.parse(source))))
File "/usr/local/python2/lib/python2.7/ast.py", line 37, in parse
return compile(source, filename, mode, PyCF_ONLY_AST)
File "<unknown>", line 23
**kwargs,
^
SyntaxError: invalid syntax
I, [2024-04-22T16:52:11.083518 #1] INFO -- : Skipping file ./src/pydna/parsers.py due to exception (CC::Engine::Analyzers::ParserError): `python2 /usr/src/app/lib/cc/engine/analyzers/python/parser.py` exited with code 1:
Traceback (most recent call last):
File "/usr/src/app/lib/cc/engine/analyzers/python/parser.py", line 51, in <module>
print(json.dumps(to_json(ast.parse(source))))
File "/usr/local/python2/lib/python2.7/ast.py", line 37, in parse
return compile(source, filename, mode, PyCF_ONLY_AST)
File "<unknown>", line 159
fp, rp, tmpl, *rest = parse(child.text)
^
SyntaxError: invalid syntax
I, [2024-04-22T16:52:11.107076 #1] INFO -- : Skipping file ./src/pydna/myprimers.py due to exception (CC::Engine::Analyzers::ParserError): `python2 /usr/src/app/lib/cc/engine/analyzers/python/parser.py` exited with code 1:
Traceback (most recent call last):
File "/usr/src/app/lib/cc/engine/analyzers/python/parser.py", line 51, in <module>
print(json.dumps(to_json(ast.parse(source))))
File "/usr/local/python2/lib/python2.7/ast.py", line 37, in parse
return compile(source, filename, mode, PyCF_ONLY_AST)
File "<unknown>", line 68
initlist: Iterable = None,
^
SyntaxError: invalid syntax
I, [2024-04-22T16:52:11.112886 #1] INFO -- : Skipping file ./src/pydna/seqrecord.py due to exception (CC::Engine::Analyzers::ParserError): `python2 /usr/src/app/lib/cc/engine/analyzers/python/parser.py` exited with code 1:
Traceback (most recent call last):
File "/usr/src/app/lib/cc/engine/analyzers/python/parser.py", line 51, in <module>
print(json.dumps(to_json(ast.parse(source))))
File "/usr/local/python2/lib/python2.7/ast.py", line 37, in parse
return compile(source, filename, mode, PyCF_ONLY_AST)
File "<unknown>", line 53
def __init__(self, seq, *args, id="id", name="name", description="description", **kwargs):
^
SyntaxError: invalid syntax
I, [2024-04-22T16:52:11.120578 #1] INFO -- : Skipping file ./src/pydna/genbank.py due to exception (CC::Engine::Analyzers::ParserError): `python2 /usr/src/app/lib/cc/engine/analyzers/python/parser.py` exited with code 1:
Traceback (most recent call last):
File "/usr/src/app/lib/cc/engine/analyzers/python/parser.py", line 51, in <module>
print(json.dumps(to_json(ast.parse(source))))
File "/usr/local/python2/lib/python2.7/ast.py", line 37, in parse
return compile(source, filename, mode, PyCF_ONLY_AST)
File "<unknown>", line 49
def __init__(self, users_email: str, *args, tool="pydna", **kwargs):
^
SyntaxError: invalid syntax
I, [2024-04-22T16:52:11.124652 #1] INFO -- : Skipping file ./src/pydna/readers.py due to exception (CC::Engine::Analyzers::ParserError): `python2 /usr/src/app/lib/cc/engine/analyzers/python/parser.py` exited with code 1:
Traceback (most recent call last):
File "/usr/src/app/lib/cc/engine/analyzers/python/parser.py", line 51, in <module>
print(json.dumps(to_json(ast.parse(source))))
File "/usr/local/python2/lib/python2.7/ast.py", line 37, in parse
return compile(source, filename, mode, PyCF_ONLY_AST)
File "<unknown>", line 45
raise ValueError(f"No sequences found in data:\n({str(data)[:79]})")
^
SyntaxError: invalid syntax
I, [2024-04-22T16:52:11.134823 #1] INFO -- : Skipping file ./src/pydna/genbankfile.py due to exception (CC::Engine::Analyzers::ParserError): `python2 /usr/src/app/lib/cc/engine/analyzers/python/parser.py` exited with code 1:
Traceback (most recent call last):
File "/usr/src/app/lib/cc/engine/analyzers/python/parser.py", line 51, in <module>
print(json.dumps(to_json(ast.parse(source))))
File "/usr/local/python2/lib/python2.7/ast.py", line 37, in parse
return compile(source, filename, mode, PyCF_ONLY_AST)
File "<unknown>", line 11
def __init__(self, record, *args, path=None, **kwargs):
^
SyntaxError: invalid syntax
I, [2024-04-22T16:52:11.136728 #1] INFO -- : Skipping file ./src/pydna/fakeseq.py due to exception (CC::Engine::Analyzers::ParserError): `python2 /usr/src/app/lib/cc/engine/analyzers/python/parser.py` exited with code 1:
Traceback (most recent call last):
File "/usr/src/app/lib/cc/engine/analyzers/python/parser.py", line 51, in <module>
print(json.dumps(to_json(ast.parse(source))))
File "/usr/local/python2/lib/python2.7/ast.py", line 37, in parse
return compile(source, filename, mode, PyCF_ONLY_AST)
File "<unknown>", line 37
return f"FakeSeq({self._length:.1e})"
^
SyntaxError: invalid syntax
I, [2024-04-22T16:52:11.153818 #1] INFO -- : Skipping file ./src/pydna/seq.py due to exception (CC::Engine::Analyzers::ParserError): `python2 /usr/src/app/lib/cc/engine/analyzers/python/parser.py` exited with code 1:
Traceback (most recent call last):
File "/usr/src/app/lib/cc/engine/analyzers/python/parser.py", line 51, in <module>
print(json.dumps(to_json(ast.parse(source))))
File "/usr/local/python2/lib/python2.7/ast.py", line 37, in parse
return compile(source, filename, mode, PyCF_ONLY_AST)
File "<unknown>", line 69
val.append(f"{self._data.upper().decode('ASCII')[:3]}..." f"{self._data.upper().decode('ASCII')[-3:]}")
^
SyntaxError: invalid syntax
I, [2024-04-22T16:52:11.155218 #1] INFO -- : Skipping file ./src/pydna/genbankfixer.py due to exception (CC::Engine::Analyzers::ParserError): `python2 /usr/src/app/lib/cc/engine/analyzers/python/parser.py` exited with code 1:
Traceback (most recent call last):
File "/usr/src/app/lib/cc/engine/analyzers/python/parser.py", line 51, in <module>
print(json.dumps(to_json(ast.parse(source))))
File "/usr/local/python2/lib/python2.7/ast.py", line 37, in parse
return compile(source, filename, mode, PyCF_ONLY_AST)
File "<unknown>", line 429
a, *b = seqtype.split(p)
^
SyntaxError: invalid syntax
I, [2024-04-22T16:52:11.173749 #1] INFO -- : Skipping file ./src/pydna/common_sub_strings.py due to exception (CC::Engine::Analyzers::ParserError): `python2 /usr/src/app/lib/cc/engine/analyzers/python/parser.py` exited with code 1:
Traceback (most recent call last):
File "/usr/src/app/lib/cc/engine/analyzers/python/parser.py", line 51, in <module>
print(json.dumps(to_json(ast.parse(source))))
File "/usr/local/python2/lib/python2.7/ast.py", line 37, in parse
return compile(source, filename, mode, PyCF_ONLY_AST)
File "<unknown>", line 315
def common_sub_strings(stringx: str, stringy: str, limit=25):
^
SyntaxError: invalid syntax
I, [2024-04-22T16:52:11.174435 #1] INFO -- : Skipping file ./src/pydna/primer.py due to exception (CC::Engine::Analyzers::ParserError): `python2 /usr/src/app/lib/cc/engine/analyzers/python/parser.py` exited with code 1:
Traceback (most recent call last):
File "/usr/src/app/lib/cc/engine/analyzers/python/parser.py", line 51, in <module>
print(json.dumps(to_json(ast.parse(source))))
File "/usr/local/python2/lib/python2.7/ast.py", line 37, in parse
return compile(source, filename, mode, PyCF_ONLY_AST)
File "<unknown>", line 17
def __init__(self, record, *args, amplicon=None, position=None, footprint=0, **kwargs):
^
SyntaxError: invalid syntax
I, [2024-04-22T16:52:11.294073 #1] INFO -- : Skipping file ./src/pydna/sequence_picker.py due to exception (CC::Engine::Analyzers::ParserError): `python2 /usr/src/app/lib/cc/engine/analyzers/python/parser.py` exited with code 1:
Traceback (most recent call last):
File "/usr/src/app/lib/cc/engine/analyzers/python/parser.py", line 51, in <module>
print(json.dumps(to_json(ast.parse(source))))
File "/usr/local/python2/lib/python2.7/ast.py", line 37, in parse
return compile(source, filename, mode, PyCF_ONLY_AST)
File "<unknown>", line 21
def genbank_accession(s: str):
^
SyntaxError: invalid syntax
I, [2024-04-22T16:52:11.312491 #1] INFO -- : Skipping file ./src/pydna/contig.py due to exception (CC::Engine::Analyzers::ParserError): `python2 /usr/src/app/lib/cc/engine/analyzers/python/parser.py` exited with code 1:
Traceback (most recent call last):
File "/usr/src/app/lib/cc/engine/analyzers/python/parser.py", line 51, in <module>
print(json.dumps(to_json(ast.parse(source))))
File "/usr/local/python2/lib/python2.7/ast.py", line 37, in parse
return compile(source, filename, mode, PyCF_ONLY_AST)
File "<unknown>", line 15
def __init__(self, record, *args, graph=None, nodemap=None, **kwargs):
^
SyntaxError: invalid syntax
I, [2024-04-22T16:52:11.325540 #1] INFO -- : Skipping file ./src/pydna/genbankrecord.py due to exception (CC::Engine::Analyzers::ParserError): `python2 /usr/src/app/lib/cc/engine/analyzers/python/parser.py` exited with code 1:
Traceback (most recent call last):
File "/usr/src/app/lib/cc/engine/analyzers/python/parser.py", line 51, in <module>
print(json.dumps(to_json(ast.parse(source))))
File "/usr/local/python2/lib/python2.7/ast.py", line 37, in parse
return compile(source, filename, mode, PyCF_ONLY_AST)
File "<unknown>", line 14
def __init__(self, record, *args, item="accession", start=None, stop=None, strand=1, **kwargs):
^
SyntaxError: invalid syntax
I, [2024-04-22T16:52:11.332441 #1] INFO -- : Skipping file ./src/pydna/fusionpcr.py due to exception (CC::Engine::Analyzers::ParserError): `python2 /usr/src/app/lib/cc/engine/analyzers/python/parser.py` exited with code 1:
Traceback (most recent call last):
File "/usr/src/app/lib/cc/engine/analyzers/python/parser.py", line 51, in <module>
print(json.dumps(to_json(ast.parse(source))))
File "/usr/local/python2/lib/python2.7/ast.py", line 37, in parse
return compile(source, filename, mode, PyCF_ONLY_AST)
File "<unknown>", line 20
((s1, s2, ln), *r) = terminal_overlap(a.seq.watson.lower(), rc(b.seq.crick.lower()), limit=limit)
^
SyntaxError: invalid syntax
I, [2024-04-22T16:52:11.339938 #1] INFO -- : Skipping file ./src/pydna/assembly.py due to exception (CC::Engine::Analyzers::ParserError): `python2 /usr/src/app/lib/cc/engine/analyzers/python/parser.py` exited with code 1:
Traceback (most recent call last):
File "/usr/src/app/lib/cc/engine/analyzers/python/parser.py", line 51, in <module>
print(json.dumps(to_json(ast.parse(source))))
File "/usr/local/python2/lib/python2.7/ast.py", line 37, in parse
return compile(source, filename, mode, PyCF_ONLY_AST)
File "<unknown>", line 262
self.nodemap = {**nodemap, **{nodemap[i]: i for i in nodemap}}
^
SyntaxError: invalid syntax
I, [2024-04-22T16:52:11.352155 #1] INFO -- : Skipping file ./src/pydna/threading_timer_decorator_exit.py due to exception (CC::Engine::Analyzers::ParserError): `python2 /usr/src/app/lib/cc/engine/analyzers/python/parser.py` exited with code 1:
Traceback (most recent call last):
File "/usr/src/app/lib/cc/engine/analyzers/python/parser.py", line 51, in <module>
print(json.dumps(to_json(ast.parse(source))))
File "/usr/local/python2/lib/python2.7/ast.py", line 37, in parse
return compile(source, filename, mode, PyCF_ONLY_AST)
File "<unknown>", line 34
print("{0} took too long".format(fn_name), file=sys.stderr)
^
SyntaxError: invalid syntax
I, [2024-04-22T16:52:11.362964 #1] INFO -- : Skipping file ./src/pydna/dseq.py due to exception (CC::Engine::Analyzers::ParserError): `python2 /usr/src/app/lib/cc/engine/analyzers/python/parser.py` exited with code 1:
Traceback (most recent call last):
File "/usr/src/app/lib/cc/engine/analyzers/python/parser.py", line 51, in <module>
print(json.dumps(to_json(ast.parse(source))))
File "/usr/local/python2/lib/python2.7/ast.py", line 37, in parse
return compile(source, filename, mode, PyCF_ONLY_AST)
File "<unknown>", line 380
watson: str,
^
SyntaxError: invalid syntax
I, [2024-04-22T16:52:11.365082 #1] INFO -- : Skipping file ./src/pydna/dseqrecord.py due to exception (CC::Engine::Analyzers::ParserError): `python2 /usr/src/app/lib/cc/engine/analyzers/python/parser.py` exited with code 1:
Traceback (most recent call last):
File "/usr/src/app/lib/cc/engine/analyzers/python/parser.py", line 51, in <module>
print(json.dumps(to_json(ast.parse(source))))
File "/usr/local/python2/lib/python2.7/ast.py", line 37, in parse
return compile(source, filename, mode, PyCF_ONLY_AST)
File "<unknown>", line 135
circular=None,
^
SyntaxError: invalid syntax
I, [2024-04-22T16:52:11.381145 #1] INFO -- : Skipping file ./src/pydna/gateway.py due to exception (CC::Engine::Analyzers::ParserError): `python2 /usr/src/app/lib/cc/engine/analyzers/python/parser.py` exited with code 1:
Traceback (most recent call last):
File "/usr/src/app/lib/cc/engine/analyzers/python/parser.py", line 51, in <module>
print(json.dumps(to_json(ast.parse(source))))
File "/usr/local/python2/lib/python2.7/ast.py", line 37, in parse
return compile(source, filename, mode, PyCF_ONLY_AST)
File "<unknown>", line 84
name, *parts = line.split()
^
SyntaxError: invalid syntax
I, [2024-04-22T16:52:11.383145 #1] INFO -- : Skipping file ./src/pydna/__init__.py due to exception (CC::Engine::Analyzers::ParserError): `python2 /usr/src/app/lib/cc/engine/analyzers/python/parser.py` exited with code 1:
Traceback (most recent call last):
File "/usr/src/app/lib/cc/engine/analyzers/python/parser.py", line 51, in <module>
print(json.dumps(to_json(ast.parse(source))))
File "/usr/local/python2/lib/python2.7/ast.py", line 37, in parse
return compile(source, filename, mode, PyCF_ONLY_AST)
File "<unknown>", line 194
_os.environ[f"pydna_{key}"] = _os.getenv(f"pydna_{key}", _main.get(key, default_ini[key]))
^
SyntaxError: invalid syntax
I, [2024-04-22T16:52:11.397062 #1] INFO -- : Skipping file ./src/pydna/utils.py due to exception (CC::Engine::Analyzers::ParserError): `python2 /usr/src/app/lib/cc/engine/analyzers/python/parser.py` exited with code 1:
Traceback (most recent call last):
File "/usr/src/app/lib/cc/engine/analyzers/python/parser.py", line 51, in <module>
print(json.dumps(to_json(ast.parse(source))))
File "/usr/local/python2/lib/python2.7/ast.py", line 37, in parse
return compile(source, filename, mode, PyCF_ONLY_AST)
File "<unknown>", line 78
newloc, *n = newparts
^
SyntaxError: invalid syntax
I, [2024-04-22T16:52:11.399586 #1] INFO -- : Skipping file ./src/pydna/gel.py due to exception (CC::Engine::Analyzers::ParserError): `python2 /usr/src/app/lib/cc/engine/analyzers/python/parser.py` exited with code 1:
Traceback (most recent call last):
File "/usr/src/app/lib/cc/engine/analyzers/python/parser.py", line 51, in <module>
print(json.dumps(to_json(ast.parse(source))))
File "/usr/local/python2/lib/python2.7/ast.py", line 37, in parse
return compile(source, filename, mode, PyCF_ONLY_AST)
File "<unknown>", line 50
label = f"{len(labelsource):<5} -"
^
SyntaxError: invalid syntax
I, [2024-04-22T16:52:11.409445 #1] INFO -- : Skipping file ./src/pydna/tm.py due to exception (CC::Engine::Analyzers::ParserError): `python2 /usr/src/app/lib/cc/engine/analyzers/python/parser.py` exited with code 1:
Traceback (most recent call last):
File "/usr/src/app/lib/cc/engine/analyzers/python/parser.py", line 51, in <module>
print(json.dumps(to_json(ast.parse(source))))
File "/usr/local/python2/lib/python2.7/ast.py", line 37, in parse
return compile(source, filename, mode, PyCF_ONLY_AST)
File "<unknown>", line 113
def tm_product(seq: str, K=0.050):
^
SyntaxError: invalid syntax
I, [2024-04-22T16:52:11.417753 #1] INFO -- : Skipping file ./src/pydna/amplify.py due to exception (CC::Engine::Analyzers::ParserError): `python2 /usr/src/app/lib/cc/engine/analyzers/python/parser.py` exited with code 1:
Traceback (most recent call last):
File "/usr/src/app/lib/cc/engine/analyzers/python/parser.py", line 51, in <module>
print(json.dumps(to_json(ast.parse(source))))
File "/usr/local/python2/lib/python2.7/ast.py", line 37, in parse
return compile(source, filename, mode, PyCF_ONLY_AST)
File "<unknown>", line 107
positions = [m.start() for m in _re.finditer(f"(?={head})", template, _re.I)]
^
SyntaxError: invalid syntax
I, [2024-04-22T16:52:11.564073 #1] INFO -- : Skipping file ./src/pydna/crispr.py due to exception (CC::Engine::Analyzers::ParserError): `python2 /usr/src/app/lib/cc/engine/analyzers/python/parser.py` exited with code 1:
Traceback (most recent call last):
File "/usr/src/app/lib/cc/engine/analyzers/python/parser.py", line 51, in <module>
print(json.dumps(to_json(ast.parse(source))))
File "/usr/local/python2/lib/python2.7/ast.py", line 37, in parse
return compile(source, filename, mode, PyCF_ONLY_AST)
File "<unknown>", line 32
f"(?=(?P<watson>{protospacer}{self.pam}))|(?=(?P<crick>{rc(self.pam)}{rc(protospacer)}))", re.UNICODE
^
SyntaxError: invalid syntax
I, [2024-04-22T16:52:11.582005 #1] INFO -- : Skipping file ./src/pydna/amplicon.py due to exception (CC::Engine::Analyzers::ParserError): `python2 /usr/src/app/lib/cc/engine/analyzers/python/parser.py` exited with code 1:
Traceback (most recent call last):
File "/usr/src/app/lib/cc/engine/analyzers/python/parser.py", line 51, in <module>
print(json.dumps(to_json(ast.parse(source))))
File "/usr/local/python2/lib/python2.7/ast.py", line 37, in parse
return compile(source, filename, mode, PyCF_ONLY_AST)
File "<unknown>", line 46
def __init__(self, record, *args, template=None, forward_primer=None, reverse_primer=None, **kwargs):
^
SyntaxError: invalid syntax
I, [2024-04-22T16:52:11.618887 #1] INFO -- : Skipping file ./src/pydna/ligate.py due to exception (CC::Engine::Analyzers::ParserError): `python2 /usr/src/app/lib/cc/engine/analyzers/python/parser.py` exited with code 1:
Traceback (most recent call last):
File "/usr/src/app/lib/cc/engine/analyzers/python/parser.py", line 51, in <module>
print(json.dumps(to_json(ast.parse(source))))
File "/usr/local/python2/lib/python2.7/ast.py", line 37, in parse
return compile(source, filename, mode, PyCF_ONLY_AST)
File "<unknown>", line 17
def ligate(fragments: list):
^
SyntaxError: invalid syntax
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Björn Johansson authored 989e76ee