BondGraphTools/BondGraphTools

codeclimate validate-config
No errors or warnings found in .codeclimate.yml.

codeclimate prepare

determining required images

12
Parser process id: 12
codeclimate-parser socket not present
waiting 1s...

12
Parser process id: 12
codeclimate-parser socket not present
waiting 1s...
I, [2024-04-04T23:56:55.390518 #1]  INFO -- : Skipping file ./BondGraphTools/compound.py due to exception (CC::Engine::Analyzers::ParserError): `python2 /usr/src/app/lib/cc/engine/analyzers/python/parser.py` exited with code 1:
Traceback (most recent call last):
  File "/usr/src/app/lib/cc/engine/analyzers/python/parser.py", line 51, in <module>
    print(json.dumps(to_json(ast.parse(source))))
  File "/usr/local/python2/lib/python2.7/ast.py", line 37, in parse
    return compile(source, filename, mode, PyCF_ONLY_AST)
  File "<unknown>", line 57
    test_uri = f"{self.uri}/{name}"
                                  ^
SyntaxError: invalid syntax


I, [2024-04-04T23:56:55.392982 #1]  INFO -- : Skipping file ./BondGraphTools/fileio.py due to exception (CC::Engine::Analyzers::ParserError): `python2 /usr/src/app/lib/cc/engine/analyzers/python/parser.py` exited with code 1:
Traceback (most recent call last):
  File "/usr/src/app/lib/cc/engine/analyzers/python/parser.py", line 51, in <module>
    print(json.dumps(to_json(ast.parse(source))))
  File "/usr/local/python2/lib/python2.7/ast.py", line 37, in parse
    return compile(source, filename, mode, PyCF_ONLY_AST)
  File "<unknown>", line 75
    f"{c.name} {uri}"
                    ^
SyntaxError: invalid syntax


I, [2024-04-04T23:56:55.405813 #1]  INFO -- : Skipping file ./BondGraphTools/actions.py due to exception (CC::Engine::Analyzers::ParserError): `python2 /usr/src/app/lib/cc/engine/analyzers/python/parser.py` exited with code 1:
Traceback (most recent call last):
  File "/usr/src/app/lib/cc/engine/analyzers/python/parser.py", line 51, in <module>
    print(json.dumps(to_json(ast.parse(source))))
  File "/usr/local/python2/lib/python2.7/ast.py", line 37, in parse
    return compile(source, filename, mode, PyCF_ONLY_AST)
  File "<unknown>", line 36
    assert model, f"{item} is not part of a model."
                                                  ^
SyntaxError: invalid syntax


I, [2024-04-04T23:56:55.424049 #1]  INFO -- : Skipping file ./BondGraphTools/port_hamiltonian.py due to exception (CC::Engine::Analyzers::ParserError): `python2 /usr/src/app/lib/cc/engine/analyzers/python/parser.py` exited with code 1:
Traceback (most recent call last):
  File "/usr/src/app/lib/cc/engine/analyzers/python/parser.py", line 51, in <module>
    print(json.dumps(to_json(ast.parse(source))))
  File "/usr/local/python2/lib/python2.7/ast.py", line 37, in parse
    return compile(source, filename, mode, PyCF_ONLY_AST)
  File "<unknown>", line 79
    state_vars[f"q_{i}"] = str(atom)
                      ^
SyntaxError: invalid syntax


I, [2024-04-04T23:56:55.424820 #1]  INFO -- : Skipping file ./BondGraphTools/base.py due to exception (CC::Engine::Analyzers::ParserError): `python2 /usr/src/app/lib/cc/engine/analyzers/python/parser.py` exited with code 1:
Traceback (most recent call last):
  File "/usr/src/app/lib/cc/engine/analyzers/python/parser.py", line 51, in <module>
    print(json.dumps(to_json(ast.parse(source))))
  File "/usr/local/python2/lib/python2.7/ast.py", line 37, in parse
    return compile(source, filename, mode, PyCF_ONLY_AST)
  File "<unknown>", line 33
    self.name = f"{self.metamodel}" \
                                  ^
SyntaxError: invalid syntax


I, [2024-04-04T23:56:55.436894 #1]  INFO -- : Skipping file ./BondGraphTools/view.py due to exception (CC::Engine::Analyzers::ParserError): `python2 /usr/src/app/lib/cc/engine/analyzers/python/parser.py` exited with code 1:
Traceback (most recent call last):
  File "/usr/src/app/lib/cc/engine/analyzers/python/parser.py", line 51, in <module>
    print(json.dumps(to_json(ast.parse(source))))
  File "/usr/local/python2/lib/python2.7/ast.py", line 37, in parse
    return compile(source, filename, mode, PyCF_ONLY_AST)
  File "<unknown>", line 46
    ax.set_title(f"{system.name}")
                                ^
SyntaxError: invalid syntax


I, [2024-04-04T23:56:55.439473 #1]  INFO -- : Skipping file ./BondGraphTools/atomic.py due to exception (CC::Engine::Analyzers::ParserError): `python2 /usr/src/app/lib/cc/engine/analyzers/python/parser.py` exited with code 1:
Traceback (most recent call last):
  File "/usr/src/app/lib/cc/engine/analyzers/python/parser.py", line 51, in <module>
    print(json.dumps(to_json(ast.parse(source))))
  File "/usr/local/python2/lib/python2.7/ast.py", line 37, in parse
    return compile(source, filename, mode, PyCF_ONLY_AST)
  File "<unknown>", line 34
    return f"{self.__library__}/{self.__component__}"
                                                    ^
SyntaxError: invalid syntax


I, [2024-04-04T23:56:55.451326 #1]  INFO -- : Skipping file ./BondGraphTools/algebra.py due to exception (CC::Engine::Analyzers::ParserError): `python2 /usr/src/app/lib/cc/engine/analyzers/python/parser.py` exited with code 1:
Traceback (most recent call last):
  File "/usr/src/app/lib/cc/engine/analyzers/python/parser.py", line 51, in <module>
    print(json.dumps(to_json(ast.parse(source))))
  File "/usr/local/python2/lib/python2.7/ast.py", line 37, in parse
    return compile(source, filename, mode, PyCF_ONLY_AST)
  File "<unknown>", line 22
    def extract_coefficients(equation: sympy.Expr,
                                     ^
SyntaxError: invalid syntax


I, [2024-04-04T23:56:55.463139 #1]  INFO -- : Skipping file ./BondGraphTools/sim_tools.py due to exception (CC::Engine::Analyzers::ParserError): `python2 /usr/src/app/lib/cc/engine/analyzers/python/parser.py` exited with code 1:
Traceback (most recent call last):
  File "/usr/src/app/lib/cc/engine/analyzers/python/parser.py", line 51, in <module>
    print(json.dumps(to_json(ast.parse(source))))
  File "/usr/local/python2/lib/python2.7/ast.py", line 37, in parse
    return compile(source, filename, mode, PyCF_ONLY_AST)
  File "<unknown>", line 31
    raise ModelException(f"Invalid Initial Conditions: {x0}")
                                                           ^
SyntaxError: invalid syntax


I, [2024-04-04T23:56:55.470927 #1]  INFO -- : Skipping file ./BondGraphTools/reaction_builder.py due to exception (CC::Engine::Analyzers::ParserError): `python2 /usr/src/app/lib/cc/engine/analyzers/python/parser.py` exited with code 1:
Traceback (most recent call last):
  File "/usr/src/app/lib/cc/engine/analyzers/python/parser.py", line 51, in <module>
    print(json.dumps(to_json(ast.parse(source))))
  File "/usr/local/python2/lib/python2.7/ast.py", line 37, in parse
    return compile(source, filename, mode, PyCF_ONLY_AST)
  File "<unknown>", line 97
    coords = symbols(",".join([f"x_{{{s}}}" for s in self.species]))
                                          ^
SyntaxError: invalid syntax


I, [2024-04-04T23:56:55.488255 #1]  INFO -- : Skipping file ./BondGraphTools/port_managers.py due to exception (CC::Engine::Analyzers::ParserError): `python2 /usr/src/app/lib/cc/engine/analyzers/python/parser.py` exited with code 1:
Traceback (most recent call last):
  File "/usr/src/app/lib/cc/engine/analyzers/python/parser.py", line 51, in <module>
    print(json.dumps(to_json(ast.parse(source))))
  File "/usr/local/python2/lib/python2.7/ast.py", line 37, in parse
    return compile(source, filename, mode, PyCF_ONLY_AST)
  File "<unknown>", line 63
    raise InvalidPortException(f"Port is already connected: "
                                                            ^
SyntaxError: invalid syntax