Showing 89 of 113 total issues
File layer.py has 520 lines of code (exceeds 250 allowed). Consider refactoring. Open
"""This module defines custom layers."""
import itertools
from typing import List, Tuple, Union
import numpy as npFile interface.py has 513 lines of code (exceeds 250 allowed). Consider refactoring. Open
"""
Interface between the data loaders and file loaders.
"""
from abc import ABCFile u_net.py has 508 lines of code (exceeds 250 allowed). Consider refactoring. Open
# coding=utf-8
from typing import List, Optional, Tuple, Union
import tensorflow as tfFile network.py has 476 lines of code (exceeds 250 allowed). Consider refactoring. Open
import os
from abc import abstractmethod
from copy import deepcopy
from typing import Dict, Optional, Tuple
File preprocess.py has 398 lines of code (exceeds 250 allowed). Consider refactoring. Open
"""
Module containing data augmentation techniques.
- 3D Affine/DDF Transforms for moving and fixed images.
"""
File layer_util.py has 361 lines of code (exceeds 250 allowed). Consider refactoring. Open
"""
Module containing utilities for layer inputs
"""
import itertools
from typing import List, Tuple, UnionFunction get_intra_sample_indices has a Cognitive Complexity of 27 (exceeds 5 allowed). Consider refactoring. Open
def get_intra_sample_indices(self) -> list:
"""
Calculate the sample indices for intra-group sampling
The index to identify a sample is (group1, image1, group2, image2), means
- image1 of group1 is moving image- Read upRead up
Cognitive Complexity
Cognitive Complexity is a measure of how difficult a unit of code is to intuitively understand. Unlike Cyclomatic Complexity, which determines how difficult your code will be to test, Cognitive Complexity tells you how difficult your code will be to read and comprehend.
A method's cognitive complexity is based on a few simple rules:
- Code is not considered more complex when it uses shorthand that the language provides for collapsing multiple statements into one
- Code is considered more complex for each "break in the linear flow of the code"
- Code is considered more complex when "flow breaking structures are nested"
Further reading
File predict.py has 326 lines of code (exceeds 250 allowed). Consider refactoring. Open
# coding=utf-8
"""
Module to perform predictions on data using
command line interface.Function predict_on_dataset has a Cognitive Complexity of 26 (exceeds 5 allowed). Consider refactoring. Open
def predict_on_dataset(
dataset: tf.data.Dataset,
fixed_grid_ref: tf.Tensor,
model: tf.keras.Model,
save_dir: str,- Read upRead up
Cognitive Complexity
Cognitive Complexity is a measure of how difficult a unit of code is to intuitively understand. Unlike Cyclomatic Complexity, which determines how difficult your code will be to test, Cognitive Complexity tells you how difficult your code will be to read and comprehend.
A method's cognitive complexity is based on a few simple rules:
- Code is not considered more complex when it uses shorthand that the language provides for collapsing multiple statements into one
- Code is considered more complex for each "break in the linear flow of the code"
- Code is considered more complex when "flow breaking structures are nested"
Further reading
File vis.py has 320 lines of code (exceeds 250 allowed). Consider refactoring. Open
"""
Module to generate visualisations of data
at command line interface.
Requires ffmpeg writer to write gif files
"""File label.py has 305 lines of code (exceeds 250 allowed). Consider refactoring. Open
"""Provide different loss or metrics classes for labels."""
import tensorflow as tf
from deepreg.constant import EPSFunction sample_index_generator has a Cognitive Complexity of 18 (exceeds 5 allowed). Consider refactoring. Open
def sample_index_generator(self):
"""
Yield (moving_index, fixed_index, image_indices) sequentially, where
- moving_index = (group1, image1)- Read upRead up
Cognitive Complexity
Cognitive Complexity is a measure of how difficult a unit of code is to intuitively understand. Unlike Cyclomatic Complexity, which determines how difficult your code will be to test, Cognitive Complexity tells you how difficult your code will be to read and comprehend.
A method's cognitive complexity is based on a few simple rules:
- Code is not considered more complex when it uses shorthand that the language provides for collapsing multiple statements into one
- Code is considered more complex for each "break in the linear flow of the code"
- Code is considered more complex when "flow breaking structures are nested"
Further reading
File registry.py has 256 lines of code (exceeds 250 allowed). Consider refactoring. Open
from copy import deepcopy
from typing import Any, Callable, Dict, Optional
BACKBONE_CLASS = "backbone_class"
LOSS_CLASS = "loss_class"Function __init__ has 17 arguments (exceeds 4 allowed). Consider refactoring. Open
def __init__(File image.py has 254 lines of code (exceeds 250 allowed). Consider refactoring. Open
"""Provide different loss or metrics classes for images."""
import tensorflow as tf
from deepreg.constant import EPS
from deepreg.loss.kernel import gaussian_kernel1d_size as gaussian_kernel1dFunction gif_tile_slices has a Cognitive Complexity of 14 (exceeds 5 allowed). Consider refactoring. Open
def gif_tile_slices(img_paths, save_path=None, size=(2, 2), fname=None, interval=50):
"""
Creates tiled gif over slices of multiple images.
:param img_paths: list or comma separated string of image paths- Read upRead up
Cognitive Complexity
Cognitive Complexity is a measure of how difficult a unit of code is to intuitively understand. Unlike Cyclomatic Complexity, which determines how difficult your code will be to test, Cognitive Complexity tells you how difficult your code will be to read and comprehend.
A method's cognitive complexity is based on a few simple rules:
- Code is not considered more complex when it uses shorthand that the language provides for collapsing multiple statements into one
- Code is considered more complex for each "break in the linear flow of the code"
- Code is considered more complex when "flow breaking structures are nested"
Further reading
Function move_test_cases_into_correct_path has a Cognitive Complexity of 14 (exceeds 5 allowed). Consider refactoring. Open
def move_test_cases_into_correct_path(test_cases, path_to_train, path_to_test):
folder_names = os.listdir(path_to_train)
os.chdir(path_to_train)
for case in test_cases:
for folder in folder_names:- Read upRead up
Cognitive Complexity
Cognitive Complexity is a measure of how difficult a unit of code is to intuitively understand. Unlike Cyclomatic Complexity, which determines how difficult your code will be to test, Cognitive Complexity tells you how difficult your code will be to read and comprehend.
A method's cognitive complexity is based on a few simple rules:
- Code is not considered more complex when it uses shorthand that the language provides for collapsing multiple statements into one
- Code is considered more complex for each "break in the linear flow of the code"
- Code is considered more complex when "flow breaking structures are nested"
Further reading
Function move_test_cases_into_correct_path has a Cognitive Complexity of 14 (exceeds 5 allowed). Consider refactoring. Open
def move_test_cases_into_correct_path(test_cases, path_to_train, path_to_test):
folder_names = os.listdir(path_to_train)
os.chdir(path_to_train)
for case in test_cases:
for folder in folder_names:- Read upRead up
Cognitive Complexity
Cognitive Complexity is a measure of how difficult a unit of code is to intuitively understand. Unlike Cyclomatic Complexity, which determines how difficult your code will be to test, Cognitive Complexity tells you how difficult your code will be to read and comprehend.
A method's cognitive complexity is based on a few simple rules:
- Code is not considered more complex when it uses shorthand that the language provides for collapsing multiple statements into one
- Code is considered more complex for each "break in the linear flow of the code"
- Code is considered more complex when "flow breaking structures are nested"
Further reading
Function build_layers has 13 arguments (exceeds 4 allowed). Consider refactoring. Open
def build_layers(Function get_inter_sample_indices has a Cognitive Complexity of 13 (exceeds 5 allowed). Consider refactoring. Open
def get_inter_sample_indices(self) -> list:
"""
Calculate the sample indices for inter-group sampling
The index to identify a sample is (group1, image1, group2, image2), means
- Read upRead up
Cognitive Complexity
Cognitive Complexity is a measure of how difficult a unit of code is to intuitively understand. Unlike Cyclomatic Complexity, which determines how difficult your code will be to test, Cognitive Complexity tells you how difficult your code will be to read and comprehend.
A method's cognitive complexity is based on a few simple rules:
- Code is not considered more complex when it uses shorthand that the language provides for collapsing multiple statements into one
- Code is considered more complex for each "break in the linear flow of the code"
- Code is considered more complex when "flow breaking structures are nested"