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Function build_decode_layers has 12 arguments (exceeds 4 allowed). Consider refactoring.
Open

    def build_decode_layers(
Severity: Major
Found in deepreg/model/backbone/u_net.py - About 1 hr to fix

    Function __init__ has 12 arguments (exceeds 4 allowed). Consider refactoring.
    Open

        def __init__(
    Severity: Major
    Found in deepreg/model/backbone/local_net.py - About 1 hr to fix

      Function predict has 11 arguments (exceeds 4 allowed). Consider refactoring.
      Open

      def predict(
      Severity: Major
      Found in deepreg/predict.py - About 1 hr to fix

        Function __init__ has 9 arguments (exceeds 4 allowed). Consider refactoring.
        Open

            def __init__(
        Severity: Major
        Found in deepreg/dataset/loader/grouped_loader.py - About 1 hr to fix

          Function call has 28 lines of code (exceeds 25 allowed). Consider refactoring.
          Open

              def call(self, y_true: tf.Tensor, y_pred: tf.Tensor) -> tf.Tensor:
        """
        Return loss for a batch.

        :param y_true: shape = (batch, dim1, dim2, dim3)
          Severity: Minor
          Found in deepreg/loss/image.py - About 1 hr to fix

            Function tile_slices has a Cognitive Complexity of 10 (exceeds 5 allowed). Consider refactoring.
            Open

            def tile_slices(img_paths, save_path="", fname=None, slice_inds=None, col_titles=None):
    """
    Generate a tiled plot of multiple images for multiple slices in the image.
    Rows are different slices, columns are different images.
            Severity: Minor
            Found in deepreg/vis.py - About 1 hr to fix

            Cognitive Complexity

            Cognitive Complexity is a measure of how difficult a unit of code is to intuitively understand. Unlike Cyclomatic Complexity, which determines how difficult your code will be to test, Cognitive Complexity tells you how difficult your code will be to read and comprehend.

            A method's cognitive complexity is based on a few simple rules:

            • Code is not considered more complex when it uses shorthand that the language provides for collapsing multiple statements into one
            • Code is considered more complex for each "break in the linear flow of the code"
            • Code is considered more complex when "flow breaking structures are nested"

            Further reading

            Function train has 8 arguments (exceeds 4 allowed). Consider refactoring.
            Open

            def train(
            Severity: Major
            Found in deepreg/train.py - About 1 hr to fix

              Function call has a Cognitive Complexity of 9 (exceeds 5 allowed). Consider refactoring.
              Open

                  def call(self, inputs: tf.Tensor, **kwargs) -> tf.Tensor:
        """
        Perform two fold resize.

        :param inputs: shape = (batch, dim1, dim2, dim3, channels)
              Severity: Minor
              Found in deepreg/model/layer.py - About 55 mins to fix

              Cognitive Complexity

              Cognitive Complexity is a measure of how difficult a unit of code is to intuitively understand. Unlike Cyclomatic Complexity, which determines how difficult your code will be to test, Cognitive Complexity tells you how difficult your code will be to read and comprehend.

              A method's cognitive complexity is based on a few simple rules:

              • Code is not considered more complex when it uses shorthand that the language provides for collapsing multiple statements into one
              • Code is considered more complex for each "break in the linear flow of the code"
              • Code is considered more complex when "flow breaking structures are nested"

              Further reading

              Function __init__ has 7 arguments (exceeds 4 allowed). Consider refactoring.
              Open

                  def __init__(
              Severity: Major
              Found in examples/custom_backbone.py - About 50 mins to fix

                Function __init__ has 7 arguments (exceeds 4 allowed). Consider refactoring.
                Open

                    def __init__(
                Severity: Major
                Found in deepreg/model/network.py - About 50 mins to fix

                  Function save_array has 7 arguments (exceeds 4 allowed). Consider refactoring.
                  Open

                  def save_array(
                  Severity: Major
                  Found in deepreg/util.py - About 50 mins to fix

                    Function build_encode_layers has 7 arguments (exceeds 4 allowed). Consider refactoring.
                    Open

                        def build_encode_layers(
                    Severity: Major
                    Found in deepreg/model/backbone/u_net.py - About 50 mins to fix

                      Function __init__ has 7 arguments (exceeds 4 allowed). Consider refactoring.
                      Open

                          def __init__(
                      Severity: Major
                      Found in deepreg/loss/label.py - About 50 mins to fix

                        Function __init__ has 7 arguments (exceeds 4 allowed). Consider refactoring.
                        Open

                            def __init__(
                        Severity: Major
                        Found in deepreg/model/backbone/local_net.py - About 50 mins to fix

                          Function __init__ has 7 arguments (exceeds 4 allowed). Consider refactoring.
                          Open

                              def __init__(
                          Severity: Major
                          Found in deepreg/dataset/preprocess.py - About 50 mins to fix

                            Function __init__ has 7 arguments (exceeds 4 allowed). Consider refactoring.
                            Open

                                def __init__(
                            Severity: Major
                            Found in deepreg/model/backbone/interface.py - About 50 mins to fix

                              Function __init__ has 7 arguments (exceeds 4 allowed). Consider refactoring.
                              Open

                                  def __init__(
                              Severity: Major
                              Found in deepreg/dataset/loader/paired_loader.py - About 50 mins to fix

                                Function sample_image_label has 6 arguments (exceeds 4 allowed). Consider refactoring.
                                Open

                                    def sample_image_label(
                                Severity: Minor
                                Found in deepreg/dataset/loader/interface.py - About 45 mins to fix

                                  Avoid deeply nested control flow statements.
                                  Open

                                                  if np.sum((values - values_init) ** 2) > 0:
                    break
                                  Severity: Major
                                  Found in demos/unpaired_mr_brain/demo_data.py - About 45 mins to fix

                                    Function get_dataset_and_preprocess has a Cognitive Complexity of 8 (exceeds 5 allowed). Consider refactoring.
                                    Open

                                        def get_dataset_and_preprocess(
        self,
        training: bool,
        batch_size: int,
        repeat: bool,
                                    Severity: Minor
                                    Found in deepreg/dataset/loader/interface.py - About 45 mins to fix

                                    Cognitive Complexity

                                    Cognitive Complexity is a measure of how difficult a unit of code is to intuitively understand. Unlike Cyclomatic Complexity, which determines how difficult your code will be to test, Cognitive Complexity tells you how difficult your code will be to read and comprehend.

                                    A method's cognitive complexity is based on a few simple rules:

                                    • Code is not considered more complex when it uses shorthand that the language provides for collapsing multiple statements into one
                                    • Code is considered more complex for each "break in the linear flow of the code"
                                    • Code is considered more complex when "flow breaking structures are nested"

                                    Further reading

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