Method getLiveParentsOf has a Cognitive Complexity of 16 (exceeds 5 allowed). Consider refactoring.

Open

    private ArrayList<GeneticCell> getLiveParentsOf(int row, int col, int neighborhoodSize, CAGridComponents gridComps) {
        // returns list of live cells surrounding cell
        // size must be odd!
        ArrayList<GeneticCell> parents = new ArrayList<GeneticCell>();
        final boolean SKIP_SELF = true;

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Method testActivationPropagation has 51 lines of code (exceeds 25 allowed). Consider refactoring.

Open

    @Test
    public void testActivationPropagation() throws Exception {
        TestCell2 cell_builder = new TestCell2();
        logger.debug("cell builder:" + cell_builder);
        GeneticCell testCell = new GeneticCell(1, cell_builder);

Method inheritGenes has 49 lines of code (exceeds 25 allowed). Consider refactoring.

Open

    public void inheritGenes(DGRN parent, int maxAlleles) {
        // inherits genes from given parent assuming parent will represent 1/maxAlleles in genetic material
        //     example: maxAlleles=2 (haploid)
        //      parent_1: gene1(alleles:2), gene2(alleles:1)
        //      patent_2: gene1(alleles:1), gene2(alleles:1), gene3(alleles:1)

Method unpackAssets has a Cognitive Complexity of 15 (exceeds 5 allowed). Consider refactoring.

Open

    public void unpackAssets() {
        URL url = PixelonTransmission.class.getProtectionDomain().getCodeSource().getLocation();
        logger.info("copying assets...");
        logger.trace("URL:" + url);
        logger.trace("ext:" + Gdx.files.getExternalStoragePath());

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Method handleInput has a Cognitive Complexity of 15 (exceeds 5 allowed). Consider refactoring.

Open

    private void handleInput() {
        if (mapInputEnabled) {
            boolean update = false;

            final float speed = MOVE_SPEED * gameCamera.zoom * Gdx.graphics.getDeltaTime();

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Method handleContactPair has 47 lines of code (exceeds 25 allowed). Consider refactoring.

Open

    private void handleContactPair(Entity entityA, Name nameA, Entity entityB, Name nameB) {
        // collision damage form A to B
        if (entityA.getComponent(CollideEffect.class) != null
                && entityB.getComponent(Health.class) != null) {
            entityB.getComponent(Health.class).health -= entityA.getComponent(CollideEffect.class).damage;

Method unpackAssets has 47 lines of code (exceeds 25 allowed). Consider refactoring.

Open

    public void unpackAssets() {
        URL url = PixelonTransmission.class.getProtectionDomain().getCodeSource().getLocation();
        logger.info("copying assets...");
        logger.trace("URL:" + url);
        logger.trace("ext:" + Gdx.files.getExternalStoragePath());

Method process has 45 lines of code (exceeds 25 allowed). Consider refactoring.

Open

    @Override
    public void process(Entity player) {
        Preferences prefs = GameSettings.getPreferences();
        int pathDrawRadius = prefs.getInteger(GameSettings.KEY_WEAPON_PATHDRAW_RADIUS);

Method tick has 44 lines of code (exceeds 25 allowed). Consider refactoring.

Open

    public void tick() {
        // computes one cycle through the DGRN
        // propagate signals through network
        HashMap<String, Integer> nodeUpdates = new HashMap<String, Integer>();
        for (Edge edge : graph.getAllEdges()) {

Method createEntityByID has 43 lines of code (exceeds 25 allowed). Consider refactoring.

Open

    public int createEntityByID(EntityID id, Vector2 pos, float angleDeg) {
        // angleDeg: angle relative to +x axis
        try {
            switch (id) {
                case BULLET:

Method initLoadWindow has 40 lines of code (exceeds 25 allowed). Consider refactoring.

Open

    private void initLoadWindow() {
        final float PADDING = 2f;

        loadWindow.setWidth(SAVE_WINDOW_WIDTH);
        loadWindow.setHeight(SAVE_WINDOW_HEIGHT);

Method addMenuTableButtons has 38 lines of code (exceeds 25 allowed). Consider refactoring.

Open

    private void addMenuTableButtons() {
        // set up menu buttons:
        VisLabel controlTypeLabel = new VisLabel("weapon control scheme");
        menuTable.add(controlTypeLabel).pad(0f, 0f, 5f, 0f).fill(true, false).row();
        PlayerInputProcessor playInProc = world.getSystem(InputSystem.class).getPlayerInputProcessor();

Method makeMenuTable has 38 lines of code (exceeds 25 allowed). Consider refactoring.

Open

    private Table makeMenuTable() {
        Table table = new Table(skin);
        table.row();
        // main menu
        {

Method arcadeGameWorld has 36 lines of code (exceeds 25 allowed). Consider refactoring.

Open

    public static World arcadeGameWorld(PixelonTransmission pt,
                                          SpriteBatch batch, Stage stage, EntityFactory entityFactory) {

        WorldConfiguration wc = new WorldConfiguration();
        wc.register(entityFactory);

Method createTubSnake has 36 lines of code (exceeds 25 allowed). Consider refactoring.

Open

    private int createTubSnake(Vector2 pos) {
        Entity ent = new EntityBuilder(world, npc, "tub still life with snake behavior", EntityID.TUBSNAKE.toString(), pos)
                .addBuilder(new VisualBuilder()
                        .texture(Resources.TEX_TUBSNAKE)
                        .renderIndex(RenderIndex.NPC)

Method addCALayers has 36 lines of code (exceeds 25 allowed). Consider refactoring.

Open

    public void addCALayers(Vector2 pos, int playerID) {
        logger.info("adding CA layers");
        // adds all ca layer entities to the scene.
        Camera camera = world.getSystem(CameraSystem.class).getGameCamera();

Method tick has a Cognitive Complexity of 12 (exceeds 5 allowed). Consider refactoring.

Open

    public void tick() {
        // computes one cycle through the DGRN
        // propagate signals through network
        HashMap<String, Integer> nodeUpdates = new HashMap<String, Integer>();
        for (Edge edge : graph.getAllEdges()) {

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Method applyCollision has a Cognitive Complexity of 12 (exceeds 5 allowed). Consider refactoring.

Open

    private void applyCollision(final int entityId, CAInteraction inter, BaseCell cell, Vector2 pos) {
        // impact the CA
        int state = cell.state;  // copy int here to avoid concurrency issue
        if (state > 0) {
            logger.trace("colliding w/ state " + state);

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Method get3dKernelizedValue has a Cognitive Complexity of 12 (exceeds 5 allowed). Consider refactoring.

Open

    private float get3dKernelizedValue(final int[][][] kernel, final int row, final int col, final int size, CAGridComponents gridComps) {
        // returns value from applying the kernel matrix to the given neighborhood
        // 3rd dimension of the kernel is state-space (ie, kernel[x][y][state])
        final boolean SKIP_SELF = true;

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Method handlePath has 35 lines of code (exceeds 25 allowed). Consider refactoring.

Open

    private void handlePath(
            InputComponent inComp,
            Vector2 pos,
            Camera camera
    ) {