Function _generateKeywordFunction has 79 lines of code (exceeds 25 allowed). Consider refactoring.

Open

    static _generateKeywordFunction() : SchemaValidateFunction {

        const olsConnectionConfig: any = config.get("OLS_API.connection");
        const olsSearchUrl = olsConnectionConfig["scheme"] + "://" + olsConnectionConfig["host"] + ":" + olsConnectionConfig["port"] + "/api/search?q="
        const cachedOlsResponses: {[key: string]: Promise<any>} = {};

IngestClient has 22 functions (exceeds 20 allowed). Consider refactoring.

Open

class IngestClient extends Client {

    constructor(connectionConfig: IngestConnectionProperties) {
        const ingestUrl = `${connectionConfig.scheme}://${connectionConfig.host}:${connectionConfig.port}`;
        super(ingestUrl);

Function findChildTerm has 52 lines of code (exceeds 25 allowed). Consider refactoring.

Open

        const findChildTerm = (schema: any, data: any, parentSchema:any, dataPath:any) => {
            return new Promise((resolve, reject) => {
                let parentTerms = schema.classes;
                const ontologyIds = schema.ontologies;
                let errors: ErrorObject[]  = [];

Function _generateKeywordFunction has a Cognitive Complexity of 15 (exceeds 5 allowed). Consider refactoring.

Open

    static _generateKeywordFunction() : SchemaValidateFunction {

        const olsConnectionConfig: any = config.get("OLS_API.connection");
        const olsSearchUrl = olsConnectionConfig["scheme"] + "://" + olsConnectionConfig["host"] + ":" + olsConnectionConfig["port"] + "/api/search?q="
        const cachedOlsResponses: {[key: string]: Promise<any>} = {};

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Function handle has 40 lines of code (exceeds 25 allowed). Consider refactoring.

Open

    handle(msg: string): Promise<boolean> {
        return new Promise<boolean>((resolve, reject) => {
            let msgContent: any = null;
            try {
                msgContent = JSON.parse(msg);

Function constructUserFriendlyMessage has a Cognitive Complexity of 13 (exceeds 5 allowed). Consider refactoring.

Open

    constructUserFriendlyMessage() : void {
        if(this.absoluteDataPath === null) {
            throw new Error("Can't construct a user friendly message: absoluteDataPath of error not set");
        } else if(!this.message) {
            throw new Error("Can't construct a user friendly message: error message not set");

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Function attemptFileValidation has 38 lines of code (exceeds 25 allowed). Consider refactoring.

Open

    attemptFileValidation(contentValidationReport: ValidationReport, fileDocument: any, documentType: string) : Promise<ValidationReport> {
        // proceed with data file validation if metadata doc validation passes
        if(documentType.toUpperCase() === 'FILE' && contentValidationReport.validationState.toUpperCase() == "VALID") {
            const fileName = fileDocument['fileName'];
            const fileFormat = IngestValidator.fileFormatFromFileName(fileName);

Function start has 33 lines of code (exceeds 25 allowed). Consider refactoring.

Open

    start(){
        amqp.connect(String(this.rabbitUrl)).then((conn) => {
            return conn.createChannel();
        }).then(ch => {
            ch.assertExchange(this.rabbitMessagingProperties.exchange, this.rabbitMessagingProperties.exchangeType).then(() => {

Function validateFile has 33 lines of code (exceeds 25 allowed). Consider refactoring.

Open

    validateFile(fileResource: any, fileFormat: string, fileName: string) : Promise<ValidationJob> {

        const validationJob = fileResource["validationJob"];
        const fileChecksums = fileResource["checksums"];

Function _handle has 33 lines of code (exceeds 25 allowed). Consider refactoring.

Open

    _handle(msgJson: any): Promise<any> {
        const callbackLink = msgJson['callbackLink'];
        const documentUrl = this.ingestClient.urlForCallbackLink(callbackLink);
        const documentType = msgJson['documentType'].toUpperCase();

Function validateSingleSchema has 29 lines of code (exceeds 25 allowed). Consider refactoring.

Open

    validateSingleSchema(inputSchema: any, inputObject: any) : Promise<ErrorObject[]> {
        inputSchema["$async"] = true;
        const schemaId: string = inputSchema['$id'];

        return new Promise((resolve, reject) => {

Function expandCurie has 28 lines of code (exceeds 25 allowed). Consider refactoring.

Open

    expandCurie(term: string) {
        const termUri = encodeURIComponent(term);
        const url = olsSearchUrl + termUri
            + "&exact=true&groupField=true&queryFields=obo_id";

Function validateFile has a Cognitive Complexity of 9 (exceeds 5 allowed). Consider refactoring.

Open

    validateFile(fileResource: any, fileFormat: string, fileName: string) : Promise<ValidationJob> {

        const validationJob = fileResource["validationJob"];
        const fileChecksums = fileResource["checksums"];

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Function _isResourceEligible has a Cognitive Complexity of 8 (exceeds 5 allowed). Consider refactoring.

Open

    static _isResourceEligible(resource: any, resourceType: string): boolean {
        if(! FastqValidator._isFile(resourceType)) {
            return false;
        } else {
            try {

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