Function formatData has a Cognitive Complexity of 15 (exceeds 5 allowed). Consider refactoring.

Open

  formatData(query, organism, rawData) {
    const formattedData = [];
    for (const rawDatum of rawData) {
      if ("modifications" in rawDatum && rawDatum.modifications) {
        for (const measurement of rawDatum.modifications) {

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Function render has 45 lines of code (exceeds 25 allowed). Consider refactoring.

Open

  render() {
    return (
      <bruit-io
        brt-config={JSON.stringify({
          apiKey: API_KEY,

Function formatDocuments has 44 lines of code (exceeds 25 allowed). Consider refactoring.

Open

  formatDocuments(uniprotId, organism, taxonDistance, rawData, formattedData) {
    for (const rawDatum of rawData) {
      if ("abundances" in rawDatum && rawDatum.abundances) {
        for (const measurement of rawDatum.abundances) {
          let proteinName = rawDatum.protein_name;

Function render has 44 lines of code (exceeds 25 allowed). Consider refactoring.

Open

  render() {
    return (
      <div className="content-container content-container-search-results-scene">
        <h1 className="page-title">
          Search: <span className="highlight-accent">{this.state.query}</span>

Function updateBounds has a Cognitive Complexity of 14 (exceeds 5 allowed). Consider refactoring.

Open

  updateBounds() {
    this.loBound = this.props.loBound;
    this.hiBound = this.props.hiBound;

    if (this.loBound == null || this.hiBound == null) {

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Function dictOfArraysToArrayOfDicts has a Cognitive Complexity of 14 (exceeds 5 allowed). Consider refactoring.

Open

function dictOfArraysToArrayOfDicts(dictOfArrays) {
  const arrayOfDicts = [];
  for (const key in dictOfArrays) {
    if (Array.isArray(dictOfArrays[key])) {
      for (let iEl = 0; iEl < dictOfArrays[key].length; iEl++) {

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Function getMatchingOrganisms has 41 lines of code (exceeds 25 allowed). Consider refactoring.

Open

  getMatchingOrganisms(query, event) {
    // Blueprint appears to issue two calls per input change; ignore the one with no defined event
    if (!event) {
      return;
    }

Function replaceNanWithNull has 41 lines of code (exceeds 25 allowed). Consider refactoring.

Open

function replaceNanWithNull(value) {
  if (Number.isNaN(value)) {
    return null;
  }

Function updateFilters has 40 lines of code (exceeds 25 allowed). Consider refactoring.

Open

  updateFilters(event) {
    const filters = [];
    for (const colApi of event.columnApi.getAllGridColumns()) {
      const colDef = colApi.colDef;

Function doesFilterPass has a Cognitive Complexity of 13 (exceeds 5 allowed). Consider refactoring.

Open

  doesFilterPass(params) {
    if (this.selectedVals.size === 0) {
      return true;
    } else {
      const getter = this.props.filterValueGetter || this.props.valueGetter;

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Function calcStats has 39 lines of code (exceeds 25 allowed). Consider refactoring.

Open

  calcStats(nodes) {
    // get values
    const vals = [];
    const nonNullVals = [];
    for (const node of nodes) {

Function render has 38 lines of code (exceeds 25 allowed). Consider refactoring.

Open

  render() {
    const results = this.state.results;
    const numResults = this.state.numResults;
    const pageSize = this.props["page-size"];
    const numMore = Math.min(pageSize, numResults - pageSize * this.pageCount);

Function processMetadata has 38 lines of code (exceeds 25 allowed). Consider refactoring.

Open

  static processMetadata(query, organism, rawData) {
    const processedData = {};

    const reactionId = MetadataSection.getReactionId(rawData[0].resource);
    const ecNumber = MetadataSection.getEcNum(rawData[0].resource);

Function render has 38 lines of code (exceeds 25 allowed). Consider refactoring.

Open

  render() {
    return (
      <div
        className={
          "ag-cell-label-container ag-header-cell-sorted-" + this.state.sort

Function calcTaxonomicDistance has 37 lines of code (exceeds 25 allowed). Consider refactoring.

Open

  static calcTaxonomicDistance(taxonDistance, targetSpecies, measuredSpecies) {
    let distance = null;

    targetSpecies = targetSpecies.toLowerCase();
    measuredSpecies = measuredSpecies.toLowerCase();

Function getColSortOrder has 37 lines of code (exceeds 25 allowed). Consider refactoring.

Open

  static getColSortOrder(query, organism, formattedData) {
    const sortOrder = [
      { colId: "taxonomicProximity", sort: "asc" },
      { colId: "organism", sort: "asc" },
    ];

Function processRelatedReactions has a Cognitive Complexity of 12 (exceeds 5 allowed). Consider refactoring.

Open

  static processRelatedReactions(organism, relatedReactions) {
    const formattedResults = [];

    for (const reaction of relatedReactions) {
      const id = reaction.kinlaw_id;

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Function getColSortOrder has a Cognitive Complexity of 12 (exceeds 5 allowed). Consider refactoring.

Open

  static getColSortOrder(query, organism, formattedData) {
    const sortOrder = [
      { colId: "taxonomicProximity", sort: "asc" },
      { colId: "organism", sort: "asc" },
    ];

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Function getSideBarDef has a Cognitive Complexity of 12 (exceeds 5 allowed). Consider refactoring.

Open

  static getSideBarDef(query, organism, formattedData) {
    const sideBar = {
      toolPanels: [
        {
          id: "columns",

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Function getReactantNames has a Cognitive Complexity of 12 (exceeds 5 allowed). Consider refactoring.

Open

  static getReactantNames(reactants, reactant_type) {
    let structure_id = null;
    let name_id = null;
    if (reactant_type === "substrate") {
      structure_id = "substrate_structure";

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