Function getColDefs has a Cognitive Complexity of 10 (exceeds 5 allowed). Consider refactoring.

Open

  static getColDefs(query, organism, formattedData, taxonomicRanks) {
    const colDefs = [
      {
        headerName: "Modifications",
        field: "numModifications",

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Function getColDefs has a Cognitive Complexity of 10 (exceeds 5 allowed). Consider refactoring.

Open

  static getColDefs(query, organism, formattedData, taxonomicRanks) {
    const colDefs = [
      {
        headerName: "Abundance",
        field: "abundance",

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Function processRelatedMetabolites has 27 lines of code (exceeds 25 allowed). Consider refactoring.

Open

  static processRelatedMetabolites(partLinks, metabolites, organism) {
    metabolites.sort((a, b) => {
      return naturalSort(a.name, b.name);
    });

Function getResultsUrl has 26 lines of code (exceeds 25 allowed). Consider refactoring.

Open

  getResultsUrl(query, pageCount, pageSize) {
    const indexQueryArg = "metabolites_meta";

    return (
      "ftx/text_search/num_of_index/?" +

Function fetchResults has 26 lines of code (exceeds 25 allowed). Consider refactoring.

Open

  fetchResults() {
    const url = this.props["get-results-url"](
      this.query,
      this.pageCount,
      this.props["page-size"]

Function getReactantNames has 26 lines of code (exceeds 25 allowed). Consider refactoring.

Open

  static getReactantNames(reactants, reactant_type) {
    let structure_id = null;
    let name_id = null;
    if (reactant_type === "substrate") {
      structure_id = "substrate_structure";

Function cellRenderer has 26 lines of code (exceeds 25 allowed). Consider refactoring.

Open

      cellRenderer: function (params) {
        const subunits = params.value;
        if (subunits != null) {
          return (
            '<ul class="comma-separated-list">' +

Function fetchResults has 26 lines of code (exceeds 25 allowed). Consider refactoring.

Open

  fetchResults() {
    const url = this.props["get-results-url"](
      this.query,
      this.pageCount,
      this.props["page-size"]

Function calcTaxonomicRanks has 26 lines of code (exceeds 25 allowed). Consider refactoring.

Open

  static calcTaxonomicRanks(organismData) {
    const ranks = [];
    for (let iLineage = 0; iLineage < organismData.length; iLineage++) {
      const lineage = organismData[iLineage];
      let rank;

Function updateVals has 26 lines of code (exceeds 25 allowed). Consider refactoring.

Open

  updateVals() {
    const unorderedVals = new Set();
    this.props.api.forEachNode((node) => {
      const getter = this.props.filterValueGetter || this.props.valueGetter;
      const value = getter(node);

Function constructor has 26 lines of code (exceeds 25 allowed). Consider refactoring.

Open

  constructor(props) {
    super(props);

    this.loBound = 0;
    this.hiBound = 1;

Function formatScientificNotation has 7 arguments (exceeds 4 allowed). Consider refactoring.

Open

  value,
  sciMagUpThresh = 1,
  sciMagDownThresh = 1,
  sciDecimals = 1,
  fixedDeminals = 1,

Avoid deeply nested control flow statements.

Open

          } else if ("values" in measurement) {
            const cellLineValues = {};

            for (const value of measurement.values) {
              let cellLine;

Avoid deeply nested control flow statements.

Open

            if ("taxon_distance" in rawDatum) {
              formattedDatum[
                "taxonomicProximity"
              ] = DataTable.calcTaxonomicDistance(
                rawDatum.taxon_distance,

Avoid deeply nested control flow statements.

Open

            if (datum.gene[0].olnNames[0].value) {
              geneName = datum.gene[0].olnNames[0].value;
            } else if (
              datum.gene[0].olnNames[0].evidences &&
              datum.gene[0].olnNames[0].evidences.length

Avoid deeply nested control flow statements.

Open

            if (organism != null) {
              formattedDatum[
                "taxonomicProximity"
              ] = DataTable.calcTaxonomicDistance(
                measurement.taxon_distance,

Avoid deeply nested control flow statements.

Open

        for (const key in val) {
          const v = val[key];
          if (Number.isNaN(v)) {
            val[key] = null;
          } else if (

Function configChart has a Cognitive Complexity of 8 (exceeds 5 allowed). Consider refactoring.

Open

  configChart() {
    if (!this.props.data.values.length) {
      return;
    }

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Function render has a Cognitive Complexity of 8 (exceeds 5 allowed). Consider refactoring.

Open

  render() {
    if (this.state.metadata && this.state.metadata.error404) {
      return <Error404 />;
    }

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Avoid deeply nested control flow statements.

Open

          if (Number.isNaN(v)) {
            val[i] = null;
          } else if (
            v != null &&
            v !== undefined &&