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Showing 238 of 403 total issues

Similar blocks of code found in 2 locations. Consider refactoring.
Open

  static getKmValues(parameters) {
    const kms = {};
    for (const parameter of parameters) {
      if (parameter.type === 27 || parameter.sbo_type === 27) {
        if (parameter.value != null) {
Severity: Major
Found in src/scenes/BiochemicalEntityDetails/Reaction/RateConstantsDataTable.js and 1 other location - About 6 hrs to fix
src/scenes/BiochemicalEntityDetails/Reaction/RateConstantsDataTable.js on lines 138..156

Duplicated Code

Duplicated code can lead to software that is hard to understand and difficult to change. The Don't Repeat Yourself (DRY) principle states:

Every piece of knowledge must have a single, unambiguous, authoritative representation within a system.

When you violate DRY, bugs and maintenance problems are sure to follow. Duplicated code has a tendency to both continue to replicate and also to diverge (leaving bugs as two similar implementations differ in subtle ways).

Tuning

This issue has a mass of 167.

We set useful threshold defaults for the languages we support but you may want to adjust these settings based on your project guidelines.

The threshold configuration represents the minimum mass a code block must have to be analyzed for duplication. The lower the threshold, the more fine-grained the comparison.

If the engine is too easily reporting duplication, try raising the threshold. If you suspect that the engine isn't catching enough duplication, try lowering the threshold. The best setting tends to differ from language to language.

See codeclimate-duplication's documentation for more information about tuning the mass threshold in your .codeclimate.yml.

Refactorings

Further Reading

Similar blocks of code found in 2 locations. Consider refactoring.
Open

  static getKiValues(parameters) {
    const kis = {};
    for (const parameter of parameters) {
      if (parameter.type === 261 || parameter.sbo_type === 261) {
        if (parameter.value != null) {
Severity: Major
Found in src/scenes/BiochemicalEntityDetails/Reaction/RateConstantsDataTable.js and 1 other location - About 6 hrs to fix
src/scenes/BiochemicalEntityDetails/Reaction/RateConstantsDataTable.js on lines 118..136

Duplicated Code

Duplicated code can lead to software that is hard to understand and difficult to change. The Don't Repeat Yourself (DRY) principle states:

Every piece of knowledge must have a single, unambiguous, authoritative representation within a system.

When you violate DRY, bugs and maintenance problems are sure to follow. Duplicated code has a tendency to both continue to replicate and also to diverge (leaving bugs as two similar implementations differ in subtle ways).

Tuning

This issue has a mass of 167.

We set useful threshold defaults for the languages we support but you may want to adjust these settings based on your project guidelines.

The threshold configuration represents the minimum mass a code block must have to be analyzed for duplication. The lower the threshold, the more fine-grained the comparison.

If the engine is too easily reporting duplication, try raising the threshold. If you suspect that the engine isn't catching enough duplication, try lowering the threshold. The best setting tends to differ from language to language.

See codeclimate-duplication's documentation for more information about tuning the mass threshold in your .codeclimate.yml.

Refactorings

Further Reading

Similar blocks of code found in 2 locations. Consider refactoring.
Open

    if (this.props.api !== prevProps.api) {
      prevProps.api.removeEventListener("firstDataRendered", this.updateVals);
      prevProps.api.removeEventListener("rowDataChanged", this.updateVals);
      prevProps.api.removeEventListener("rowDataUpdated", this.updateVals);
Severity: Major
Found in src/scenes/BiochemicalEntityDetails/TextFilter.js and 1 other location - About 6 hrs to fix
src/scenes/BiochemicalEntityDetails/NumberFilter.js on lines 65..74

Duplicated Code

Duplicated code can lead to software that is hard to understand and difficult to change. The Don't Repeat Yourself (DRY) principle states:

Every piece of knowledge must have a single, unambiguous, authoritative representation within a system.

When you violate DRY, bugs and maintenance problems are sure to follow. Duplicated code has a tendency to both continue to replicate and also to diverge (leaving bugs as two similar implementations differ in subtle ways).

Tuning

This issue has a mass of 165.

We set useful threshold defaults for the languages we support but you may want to adjust these settings based on your project guidelines.

The threshold configuration represents the minimum mass a code block must have to be analyzed for duplication. The lower the threshold, the more fine-grained the comparison.

If the engine is too easily reporting duplication, try raising the threshold. If you suspect that the engine isn't catching enough duplication, try lowering the threshold. The best setting tends to differ from language to language.

See codeclimate-duplication's documentation for more information about tuning the mass threshold in your .codeclimate.yml.

Refactorings

Further Reading

Similar blocks of code found in 2 locations. Consider refactoring.
Open

    if (this.props.api !== prevProps.api) {
      prevProps.api.removeEventListener("firstDataRendered", this.updateBounds);
      prevProps.api.removeEventListener("rowDataChanged", this.updateBounds);
      prevProps.api.removeEventListener("rowDataUpdated", this.updateBounds);
Severity: Major
Found in src/scenes/BiochemicalEntityDetails/NumberFilter.js and 1 other location - About 6 hrs to fix
src/scenes/BiochemicalEntityDetails/TextFilter.js on lines 44..53

Duplicated Code

Duplicated code can lead to software that is hard to understand and difficult to change. The Don't Repeat Yourself (DRY) principle states:

Every piece of knowledge must have a single, unambiguous, authoritative representation within a system.

When you violate DRY, bugs and maintenance problems are sure to follow. Duplicated code has a tendency to both continue to replicate and also to diverge (leaving bugs as two similar implementations differ in subtle ways).

Tuning

This issue has a mass of 165.

We set useful threshold defaults for the languages we support but you may want to adjust these settings based on your project guidelines.

The threshold configuration represents the minimum mass a code block must have to be analyzed for duplication. The lower the threshold, the more fine-grained the comparison.

If the engine is too easily reporting duplication, try raising the threshold. If you suspect that the engine isn't catching enough duplication, try lowering the threshold. The best setting tends to differ from language to language.

See codeclimate-duplication's documentation for more information about tuning the mass threshold in your .codeclimate.yml.

Refactorings

Further Reading

Similar blocks of code found in 3 locations. Consider refactoring.
Open

          <h1 className="page-title">
            Reaction:{" "}
            <span className="highlight-accent">
              {this.state.metadata ? this.state.metadata.title : ""}
            </span>
Severity: Major
Found in src/scenes/BiochemicalEntityDetails/Reaction/Reaction.js and 2 other locations - About 6 hrs to fix
src/scenes/BiochemicalEntityDetails/Gene/Gene.js on lines 58..71
src/scenes/BiochemicalEntityDetails/Metabolite/Metabolite.js on lines 42..55

Duplicated Code

Duplicated code can lead to software that is hard to understand and difficult to change. The Don't Repeat Yourself (DRY) principle states:

Every piece of knowledge must have a single, unambiguous, authoritative representation within a system.

When you violate DRY, bugs and maintenance problems are sure to follow. Duplicated code has a tendency to both continue to replicate and also to diverge (leaving bugs as two similar implementations differ in subtle ways).

Tuning

This issue has a mass of 164.

We set useful threshold defaults for the languages we support but you may want to adjust these settings based on your project guidelines.

The threshold configuration represents the minimum mass a code block must have to be analyzed for duplication. The lower the threshold, the more fine-grained the comparison.

If the engine is too easily reporting duplication, try raising the threshold. If you suspect that the engine isn't catching enough duplication, try lowering the threshold. The best setting tends to differ from language to language.

See codeclimate-duplication's documentation for more information about tuning the mass threshold in your .codeclimate.yml.

Refactorings

Further Reading

Similar blocks of code found in 3 locations. Consider refactoring.
Open

          <h1 className="page-title">
            Gene:{" "}
            <span className="highlight-accent">
              {this.state.metadata ? this.state.metadata.title : ""}
            </span>
Severity: Major
Found in src/scenes/BiochemicalEntityDetails/Gene/Gene.js and 2 other locations - About 6 hrs to fix
src/scenes/BiochemicalEntityDetails/Metabolite/Metabolite.js on lines 42..55
src/scenes/BiochemicalEntityDetails/Reaction/Reaction.js on lines 42..55

Duplicated Code

Duplicated code can lead to software that is hard to understand and difficult to change. The Don't Repeat Yourself (DRY) principle states:

Every piece of knowledge must have a single, unambiguous, authoritative representation within a system.

When you violate DRY, bugs and maintenance problems are sure to follow. Duplicated code has a tendency to both continue to replicate and also to diverge (leaving bugs as two similar implementations differ in subtle ways).

Tuning

This issue has a mass of 164.

We set useful threshold defaults for the languages we support but you may want to adjust these settings based on your project guidelines.

The threshold configuration represents the minimum mass a code block must have to be analyzed for duplication. The lower the threshold, the more fine-grained the comparison.

If the engine is too easily reporting duplication, try raising the threshold. If you suspect that the engine isn't catching enough duplication, try lowering the threshold. The best setting tends to differ from language to language.

See codeclimate-duplication's documentation for more information about tuning the mass threshold in your .codeclimate.yml.

Refactorings

Further Reading

Similar blocks of code found in 3 locations. Consider refactoring.
Open

          <h1 className="page-title">
            Metabolite:{" "}
            <span className="highlight-accent">
              {this.state.metadata ? this.state.metadata.title : ""}
            </span>
Severity: Major
Found in src/scenes/BiochemicalEntityDetails/Metabolite/Metabolite.js and 2 other locations - About 6 hrs to fix
src/scenes/BiochemicalEntityDetails/Gene/Gene.js on lines 58..71
src/scenes/BiochemicalEntityDetails/Reaction/Reaction.js on lines 42..55

Duplicated Code

Duplicated code can lead to software that is hard to understand and difficult to change. The Don't Repeat Yourself (DRY) principle states:

Every piece of knowledge must have a single, unambiguous, authoritative representation within a system.

When you violate DRY, bugs and maintenance problems are sure to follow. Duplicated code has a tendency to both continue to replicate and also to diverge (leaving bugs as two similar implementations differ in subtle ways).

Tuning

This issue has a mass of 164.

We set useful threshold defaults for the languages we support but you may want to adjust these settings based on your project guidelines.

The threshold configuration represents the minimum mass a code block must have to be analyzed for duplication. The lower the threshold, the more fine-grained the comparison.

If the engine is too easily reporting duplication, try raising the threshold. If you suspect that the engine isn't catching enough duplication, try lowering the threshold. The best setting tends to differ from language to language.

See codeclimate-duplication's documentation for more information about tuning the mass threshold in your .codeclimate.yml.

Refactorings

Further Reading

Identical blocks of code found in 2 locations. Consider refactoring.
Open

          if (organism != null) {
            if ("taxon_distance" in rawDatum) {
              formattedDatum[
                "taxonomicProximity"
              ] = DataTable.calcTaxonomicDistance(
Severity: Major
Found in src/scenes/BiochemicalEntityDetails/Gene/ProteinModificationDataTable.js and 1 other location - About 5 hrs to fix
src/scenes/BiochemicalEntityDetails/Gene/ProteinAbundanceDataTable.js on lines 98..120

Duplicated Code

Duplicated code can lead to software that is hard to understand and difficult to change. The Don't Repeat Yourself (DRY) principle states:

Every piece of knowledge must have a single, unambiguous, authoritative representation within a system.

When you violate DRY, bugs and maintenance problems are sure to follow. Duplicated code has a tendency to both continue to replicate and also to diverge (leaving bugs as two similar implementations differ in subtle ways).

Tuning

This issue has a mass of 152.

We set useful threshold defaults for the languages we support but you may want to adjust these settings based on your project guidelines.

The threshold configuration represents the minimum mass a code block must have to be analyzed for duplication. The lower the threshold, the more fine-grained the comparison.

If the engine is too easily reporting duplication, try raising the threshold. If you suspect that the engine isn't catching enough duplication, try lowering the threshold. The best setting tends to differ from language to language.

See codeclimate-duplication's documentation for more information about tuning the mass threshold in your .codeclimate.yml.

Refactorings

Further Reading

Identical blocks of code found in 2 locations. Consider refactoring.
Open

          if (organism != null) {
            if ("taxon_distance" in rawDatum) {
              formattedDatum[
                "taxonomicProximity"
              ] = DataTable.calcTaxonomicDistance(
Severity: Major
Found in src/scenes/BiochemicalEntityDetails/Gene/ProteinAbundanceDataTable.js and 1 other location - About 5 hrs to fix
src/scenes/BiochemicalEntityDetails/Gene/ProteinModificationDataTable.js on lines 111..133

Duplicated Code

Duplicated code can lead to software that is hard to understand and difficult to change. The Don't Repeat Yourself (DRY) principle states:

Every piece of knowledge must have a single, unambiguous, authoritative representation within a system.

When you violate DRY, bugs and maintenance problems are sure to follow. Duplicated code has a tendency to both continue to replicate and also to diverge (leaving bugs as two similar implementations differ in subtle ways).

Tuning

This issue has a mass of 152.

We set useful threshold defaults for the languages we support but you may want to adjust these settings based on your project guidelines.

The threshold configuration represents the minimum mass a code block must have to be analyzed for duplication. The lower the threshold, the more fine-grained the comparison.

If the engine is too easily reporting duplication, try raising the threshold. If you suspect that the engine isn't catching enough duplication, try lowering the threshold. The best setting tends to differ from language to language.

See codeclimate-duplication's documentation for more information about tuning the mass threshold in your .codeclimate.yml.

Refactorings

Further Reading

Similar blocks of code found in 3 locations. Consider refactoring.
Open

              <div className="section-column">
                <div className="section-column-icon-container">
                  <LazyLoad>
                    <object
                      data={constrainUseCaseIcon}
Severity: Major
Found in src/scenes/Home/Home.js and 2 other locations - About 5 hrs to fix
src/scenes/Home/Home.js on lines 192..214
src/scenes/Home/Home.js on lines 242..266

Duplicated Code

Duplicated code can lead to software that is hard to understand and difficult to change. The Don't Repeat Yourself (DRY) principle states:

Every piece of knowledge must have a single, unambiguous, authoritative representation within a system.

When you violate DRY, bugs and maintenance problems are sure to follow. Duplicated code has a tendency to both continue to replicate and also to diverge (leaving bugs as two similar implementations differ in subtle ways).

Tuning

This issue has a mass of 145.

We set useful threshold defaults for the languages we support but you may want to adjust these settings based on your project guidelines.

The threshold configuration represents the minimum mass a code block must have to be analyzed for duplication. The lower the threshold, the more fine-grained the comparison.

If the engine is too easily reporting duplication, try raising the threshold. If you suspect that the engine isn't catching enough duplication, try lowering the threshold. The best setting tends to differ from language to language.

See codeclimate-duplication's documentation for more information about tuning the mass threshold in your .codeclimate.yml.

Refactorings

Further Reading

Similar blocks of code found in 3 locations. Consider refactoring.
Open

              <div className="section-column">
                <div className="section-column-icon-container">
                  <LazyLoad>
                    <object
                      data={recalibrateUseCaseIcon}
Severity: Major
Found in src/scenes/Home/Home.js and 2 other locations - About 5 hrs to fix
src/scenes/Home/Home.js on lines 192..214
src/scenes/Home/Home.js on lines 216..240

Duplicated Code

Duplicated code can lead to software that is hard to understand and difficult to change. The Don't Repeat Yourself (DRY) principle states:

Every piece of knowledge must have a single, unambiguous, authoritative representation within a system.

When you violate DRY, bugs and maintenance problems are sure to follow. Duplicated code has a tendency to both continue to replicate and also to diverge (leaving bugs as two similar implementations differ in subtle ways).

Tuning

This issue has a mass of 145.

We set useful threshold defaults for the languages we support but you may want to adjust these settings based on your project guidelines.

The threshold configuration represents the minimum mass a code block must have to be analyzed for duplication. The lower the threshold, the more fine-grained the comparison.

If the engine is too easily reporting duplication, try raising the threshold. If you suspect that the engine isn't catching enough duplication, try lowering the threshold. The best setting tends to differ from language to language.

See codeclimate-duplication's documentation for more information about tuning the mass threshold in your .codeclimate.yml.

Refactorings

Further Reading

Similar blocks of code found in 3 locations. Consider refactoring.
Open

              <div className="section-column">
                <div className="section-column-icon-container">
                  <LazyLoad>
                    <object
                      data={identifyUseCaseIcon}
Severity: Major
Found in src/scenes/Home/Home.js and 2 other locations - About 5 hrs to fix
src/scenes/Home/Home.js on lines 216..240
src/scenes/Home/Home.js on lines 242..266

Duplicated Code

Duplicated code can lead to software that is hard to understand and difficult to change. The Don't Repeat Yourself (DRY) principle states:

Every piece of knowledge must have a single, unambiguous, authoritative representation within a system.

When you violate DRY, bugs and maintenance problems are sure to follow. Duplicated code has a tendency to both continue to replicate and also to diverge (leaving bugs as two similar implementations differ in subtle ways).

Tuning

This issue has a mass of 145.

We set useful threshold defaults for the languages we support but you may want to adjust these settings based on your project guidelines.

The threshold configuration represents the minimum mass a code block must have to be analyzed for duplication. The lower the threshold, the more fine-grained the comparison.

If the engine is too easily reporting duplication, try raising the threshold. If you suspect that the engine isn't catching enough duplication, try lowering the threshold. The best setting tends to differ from language to language.

See codeclimate-duplication's documentation for more information about tuning the mass threshold in your .codeclimate.yml.

Refactorings

Further Reading

Similar blocks of code found in 3 locations. Consider refactoring.
Open

                    <div className="main-developer">
                      <div className="main-developer-headshot-container">
                        <LazyLoad>
                          <a
                            href="https://www.karrlab.org/"
Severity: Major
Found in src/scenes/About/About.js and 2 other locations - About 5 hrs to fix
src/scenes/About/About.js on lines 1026..1050
src/scenes/About/About.js on lines 1051..1075

Duplicated Code

Duplicated code can lead to software that is hard to understand and difficult to change. The Don't Repeat Yourself (DRY) principle states:

Every piece of knowledge must have a single, unambiguous, authoritative representation within a system.

When you violate DRY, bugs and maintenance problems are sure to follow. Duplicated code has a tendency to both continue to replicate and also to diverge (leaving bugs as two similar implementations differ in subtle ways).

Tuning

This issue has a mass of 142.

We set useful threshold defaults for the languages we support but you may want to adjust these settings based on your project guidelines.

The threshold configuration represents the minimum mass a code block must have to be analyzed for duplication. The lower the threshold, the more fine-grained the comparison.

If the engine is too easily reporting duplication, try raising the threshold. If you suspect that the engine isn't catching enough duplication, try lowering the threshold. The best setting tends to differ from language to language.

See codeclimate-duplication's documentation for more information about tuning the mass threshold in your .codeclimate.yml.

Refactorings

Further Reading

Similar blocks of code found in 3 locations. Consider refactoring.
Open

                    <div className="main-developer">
                      <div className="main-developer-headshot-container">
                        <LazyLoad>
                          <a
                            href="https://www.linkedin.com/in/yosef-roth-a80a378a"
Severity: Major
Found in src/scenes/About/About.js and 2 other locations - About 5 hrs to fix
src/scenes/About/About.js on lines 1051..1075
src/scenes/About/About.js on lines 1076..1100

Duplicated Code

Duplicated code can lead to software that is hard to understand and difficult to change. The Don't Repeat Yourself (DRY) principle states:

Every piece of knowledge must have a single, unambiguous, authoritative representation within a system.

When you violate DRY, bugs and maintenance problems are sure to follow. Duplicated code has a tendency to both continue to replicate and also to diverge (leaving bugs as two similar implementations differ in subtle ways).

Tuning

This issue has a mass of 142.

We set useful threshold defaults for the languages we support but you may want to adjust these settings based on your project guidelines.

The threshold configuration represents the minimum mass a code block must have to be analyzed for duplication. The lower the threshold, the more fine-grained the comparison.

If the engine is too easily reporting duplication, try raising the threshold. If you suspect that the engine isn't catching enough duplication, try lowering the threshold. The best setting tends to differ from language to language.

See codeclimate-duplication's documentation for more information about tuning the mass threshold in your .codeclimate.yml.

Refactorings

Further Reading

Similar blocks of code found in 3 locations. Consider refactoring.
Open

                    <div className="main-developer">
                      <div className="main-developer-headshot-container">
                        <LazyLoad>
                          <a
                            href="https://www.linkedin.com/in/zlian/"
Severity: Major
Found in src/scenes/About/About.js and 2 other locations - About 5 hrs to fix
src/scenes/About/About.js on lines 1026..1050
src/scenes/About/About.js on lines 1076..1100

Duplicated Code

Duplicated code can lead to software that is hard to understand and difficult to change. The Don't Repeat Yourself (DRY) principle states:

Every piece of knowledge must have a single, unambiguous, authoritative representation within a system.

When you violate DRY, bugs and maintenance problems are sure to follow. Duplicated code has a tendency to both continue to replicate and also to diverge (leaving bugs as two similar implementations differ in subtle ways).

Tuning

This issue has a mass of 142.

We set useful threshold defaults for the languages we support but you may want to adjust these settings based on your project guidelines.

The threshold configuration represents the minimum mass a code block must have to be analyzed for duplication. The lower the threshold, the more fine-grained the comparison.

If the engine is too easily reporting duplication, try raising the threshold. If you suspect that the engine isn't catching enough duplication, try lowering the threshold. The best setting tends to differ from language to language.

See codeclimate-duplication's documentation for more information about tuning the mass threshold in your .codeclimate.yml.

Refactorings

Further Reading

Identical blocks of code found in 2 locations. Consider refactoring.
Open

  componentDidMount() {
    this.setState({ locationPathname: this.props.history.location.pathname });
    this.unlistenToHistory = this.props.history.listen((location) => {
      if (location.pathname !== this.state.locationPathname) {
        this.setState({ locationPathname: location.pathname });
Severity: Major
Found in src/scenes/SearchResults/SearchResultsList.js and 1 other location - About 5 hrs to fix
src/scenes/BiochemicalEntityDetails/Metabolite/SearchResultsList.js on lines 40..49

Duplicated Code

Duplicated code can lead to software that is hard to understand and difficult to change. The Don't Repeat Yourself (DRY) principle states:

Every piece of knowledge must have a single, unambiguous, authoritative representation within a system.

When you violate DRY, bugs and maintenance problems are sure to follow. Duplicated code has a tendency to both continue to replicate and also to diverge (leaving bugs as two similar implementations differ in subtle ways).

Tuning

This issue has a mass of 138.

We set useful threshold defaults for the languages we support but you may want to adjust these settings based on your project guidelines.

The threshold configuration represents the minimum mass a code block must have to be analyzed for duplication. The lower the threshold, the more fine-grained the comparison.

If the engine is too easily reporting duplication, try raising the threshold. If you suspect that the engine isn't catching enough duplication, try lowering the threshold. The best setting tends to differ from language to language.

See codeclimate-duplication's documentation for more information about tuning the mass threshold in your .codeclimate.yml.

Refactorings

Further Reading

Identical blocks of code found in 2 locations. Consider refactoring.
Open

  componentDidMount() {
    this.setState({ locationPathname: this.props.history.location.pathname });
    this.unlistenToHistory = this.props.history.listen((location) => {
      if (location.pathname !== this.state.locationPathname) {
        this.setState({ locationPathname: location.pathname });
Severity: Major
Found in src/scenes/BiochemicalEntityDetails/Metabolite/SearchResultsList.js and 1 other location - About 5 hrs to fix
src/scenes/SearchResults/SearchResultsList.js on lines 40..49

Duplicated Code

Duplicated code can lead to software that is hard to understand and difficult to change. The Don't Repeat Yourself (DRY) principle states:

Every piece of knowledge must have a single, unambiguous, authoritative representation within a system.

When you violate DRY, bugs and maintenance problems are sure to follow. Duplicated code has a tendency to both continue to replicate and also to diverge (leaving bugs as two similar implementations differ in subtle ways).

Tuning

This issue has a mass of 138.

We set useful threshold defaults for the languages we support but you may want to adjust these settings based on your project guidelines.

The threshold configuration represents the minimum mass a code block must have to be analyzed for duplication. The lower the threshold, the more fine-grained the comparison.

If the engine is too easily reporting duplication, try raising the threshold. If you suspect that the engine isn't catching enough duplication, try lowering the threshold. The best setting tends to differ from language to language.

See codeclimate-duplication's documentation for more information about tuning the mass threshold in your .codeclimate.yml.

Refactorings

Further Reading

Similar blocks of code found in 2 locations. Consider refactoring.
Open

  getUrl(query, organism) {
    if (isOrthoDbId(query)) {
      const args = ["kegg_id=" + query, "distance=40"];
      if (organism) {
        args.push("anchor=" + organism);
Severity: Major
Found in src/scenes/BiochemicalEntityDetails/Gene/ProteinAbundanceDataTable.js and 1 other location - About 5 hrs to fix
src/scenes/BiochemicalEntityDetails/Gene/ProteinModificationDataTable.js on lines 23..41

Duplicated Code

Duplicated code can lead to software that is hard to understand and difficult to change. The Don't Repeat Yourself (DRY) principle states:

Every piece of knowledge must have a single, unambiguous, authoritative representation within a system.

When you violate DRY, bugs and maintenance problems are sure to follow. Duplicated code has a tendency to both continue to replicate and also to diverge (leaving bugs as two similar implementations differ in subtle ways).

Tuning

This issue has a mass of 137.

We set useful threshold defaults for the languages we support but you may want to adjust these settings based on your project guidelines.

The threshold configuration represents the minimum mass a code block must have to be analyzed for duplication. The lower the threshold, the more fine-grained the comparison.

If the engine is too easily reporting duplication, try raising the threshold. If you suspect that the engine isn't catching enough duplication, try lowering the threshold. The best setting tends to differ from language to language.

See codeclimate-duplication's documentation for more information about tuning the mass threshold in your .codeclimate.yml.

Refactorings

Further Reading

Similar blocks of code found in 2 locations. Consider refactoring.
Open

  getUrl(query, organism) {
    if (isOrthoDbId(query)) {
      const args = ["kegg_id=" + query, "distance=40"];
      if (organism) {
        args.push("anchor=" + organism);
Severity: Major
Found in src/scenes/BiochemicalEntityDetails/Gene/ProteinModificationDataTable.js and 1 other location - About 5 hrs to fix
src/scenes/BiochemicalEntityDetails/Gene/ProteinAbundanceDataTable.js on lines 20..38

Duplicated Code

Duplicated code can lead to software that is hard to understand and difficult to change. The Don't Repeat Yourself (DRY) principle states:

Every piece of knowledge must have a single, unambiguous, authoritative representation within a system.

When you violate DRY, bugs and maintenance problems are sure to follow. Duplicated code has a tendency to both continue to replicate and also to diverge (leaving bugs as two similar implementations differ in subtle ways).

Tuning

This issue has a mass of 137.

We set useful threshold defaults for the languages we support but you may want to adjust these settings based on your project guidelines.

The threshold configuration represents the minimum mass a code block must have to be analyzed for duplication. The lower the threshold, the more fine-grained the comparison.

If the engine is too easily reporting duplication, try raising the threshold. If you suspect that the engine isn't catching enough duplication, try lowering the threshold. The best setting tends to differ from language to language.

See codeclimate-duplication's documentation for more information about tuning the mass threshold in your .codeclimate.yml.

Refactorings

Further Reading

Identical blocks of code found in 2 locations. Consider refactoring.
Open

  componentDidMount() {
    this.locationPathname = this.props.history.location.pathname;
    this.unlistenToHistory = this.props.history.listen((location) => {
      if (location.pathname !== this.locationPathname) {
        this.locationPathname = this.props.history.location.pathname;
Severity: Major
Found in src/scenes/BiochemicalEntityDetails/MetadataSection.js and 1 other location - About 4 hrs to fix
src/scenes/BiochemicalEntityDetails/DataTable/DataTable.js on lines 108..117

Duplicated Code

Duplicated code can lead to software that is hard to understand and difficult to change. The Don't Repeat Yourself (DRY) principle states:

Every piece of knowledge must have a single, unambiguous, authoritative representation within a system.

When you violate DRY, bugs and maintenance problems are sure to follow. Duplicated code has a tendency to both continue to replicate and also to diverge (leaving bugs as two similar implementations differ in subtle ways).

Tuning

This issue has a mass of 134.

We set useful threshold defaults for the languages we support but you may want to adjust these settings based on your project guidelines.

The threshold configuration represents the minimum mass a code block must have to be analyzed for duplication. The lower the threshold, the more fine-grained the comparison.

If the engine is too easily reporting duplication, try raising the threshold. If you suspect that the engine isn't catching enough duplication, try lowering the threshold. The best setting tends to differ from language to language.

See codeclimate-duplication's documentation for more information about tuning the mass threshold in your .codeclimate.yml.

Refactorings

Further Reading

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