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Function rfind_nth has a Cognitive Complexity of 9 (exceeds 5 allowed). Consider refactoring.
Open

def rfind_nth(s, sub, n, start=0, end=float('inf')):
    """ Get the index of the nth-last occurrence of a substring within a string

    Args:
        s (:obj:`str`): string to search
Severity: Minor
Found in wc_utils/util/string.py - About 55 mins to fix

Cognitive Complexity

Cognitive Complexity is a measure of how difficult a unit of code is to intuitively understand. Unlike Cyclomatic Complexity, which determines how difficult your code will be to test, Cognitive Complexity tells you how difficult your code will be to read and comprehend.

A method's cognitive complexity is based on a few simple rules:

  • Code is not considered more complex when it uses shorthand that the language provides for collapsing multiple statements into one
  • Code is considered more complex for each "break in the linear flow of the code"
  • Code is considered more complex when "flow breaking structures are nested"

Further reading

Function difference has a Cognitive Complexity of 9 (exceeds 5 allowed). Consider refactoring.
Open

    def difference(self, other):
        """ Get difference with another worksheet

        Args:
            other (:obj:`Worksheet`): other worksheet
Severity: Minor
Found in wc_utils/workbook/core.py - About 55 mins to fix

Cognitive Complexity

Cognitive Complexity is a measure of how difficult a unit of code is to intuitively understand. Unlike Cyclomatic Complexity, which determines how difficult your code will be to test, Cognitive Complexity tells you how difficult your code will be to read and comprehend.

A method's cognitive complexity is based on a few simple rules:

  • Code is not considered more complex when it uses shorthand that the language provides for collapsing multiple statements into one
  • Code is considered more complex for each "break in the linear flow of the code"
  • Code is considered more complex when "flow breaking structures are nested"

Further reading

Function read_cell has a Cognitive Complexity of 9 (exceeds 5 allowed). Consider refactoring.
Open

    def read_cell(self, sheet_name,  xls_worksheet, i_row, i_col):
        """ Read the value of a cell

        Args:
            sheet_name (:obj:`str`): worksheet name
Severity: Minor
Found in wc_utils/workbook/io.py - About 55 mins to fix

Cognitive Complexity

Cognitive Complexity is a measure of how difficult a unit of code is to intuitively understand. Unlike Cyclomatic Complexity, which determines how difficult your code will be to test, Cognitive Complexity tells you how difficult your code will be to read and comprehend.

A method's cognitive complexity is based on a few simple rules:

  • Code is not considered more complex when it uses shorthand that the language provides for collapsing multiple statements into one
  • Code is considered more complex for each "break in the linear flow of the code"
  • Code is considered more complex when "flow breaking structures are nested"

Further reading

Function difference has a Cognitive Complexity of 9 (exceeds 5 allowed). Consider refactoring.
Open

    def difference(self, other):
        """ Get difference with another row

        Args:
            other (:obj:`Row`): other row
Severity: Minor
Found in wc_utils/workbook/core.py - About 55 mins to fix

Cognitive Complexity

Cognitive Complexity is a measure of how difficult a unit of code is to intuitively understand. Unlike Cyclomatic Complexity, which determines how difficult your code will be to test, Cognitive Complexity tells you how difficult your code will be to read and comprehend.

A method's cognitive complexity is based on a few simple rules:

  • Code is not considered more complex when it uses shorthand that the language provides for collapsing multiple statements into one
  • Code is considered more complex for each "break in the linear flow of the code"
  • Code is considered more complex when "flow breaking structures are nested"

Further reading

Function write_worksheet has a Cognitive Complexity of 9 (exceeds 5 allowed). Consider refactoring.
Open

    def write_worksheet(self, sheet_name, data, style=None, validation=None, protected=False):
        """ Write worksheet to file

        Args:
            sheet_name (:obj:`str`): sheet name
Severity: Minor
Found in wc_utils/workbook/io.py - About 55 mins to fix

Cognitive Complexity

Cognitive Complexity is a measure of how difficult a unit of code is to intuitively understand. Unlike Cyclomatic Complexity, which determines how difficult your code will be to test, Cognitive Complexity tells you how difficult your code will be to read and comprehend.

A method's cognitive complexity is based on a few simple rules:

  • Code is not considered more complex when it uses shorthand that the language provides for collapsing multiple statements into one
  • Code is considered more complex for each "break in the linear flow of the code"
  • Code is considered more complex when "flow breaking structures are nested"

Further reading

Function cast_to_builtins has a Cognitive Complexity of 9 (exceeds 5 allowed). Consider refactoring.
Open

def cast_to_builtins(obj):
    """ Recursively type cast an object to a semantically equivalent object expressed using only builtin types

    * All iterable objects (objects with `__iter__` attribute) are converted to lists
    * All dictionable objects (objects which are dictionaries or which have the `__dict__` attribute) are
Severity: Minor
Found in wc_utils/util/types.py - About 55 mins to fix

Cognitive Complexity

Cognitive Complexity is a measure of how difficult a unit of code is to intuitively understand. Unlike Cyclomatic Complexity, which determines how difficult your code will be to test, Cognitive Complexity tells you how difficult your code will be to read and comprehend.

A method's cognitive complexity is based on a few simple rules:

  • Code is not considered more complex when it uses shorthand that the language provides for collapsing multiple statements into one
  • Code is considered more complex for each "break in the linear flow of the code"
  • Code is considered more complex when "flow breaking structures are nested"

Further reading

Function find_nth has a Cognitive Complexity of 9 (exceeds 5 allowed). Consider refactoring.
Open

def find_nth(s, sub, n, start=0, end=float('inf')):
    """ Get the index of the nth occurrence of a substring within a string

    Args:
        s (:obj:`str`): string to search
Severity: Minor
Found in wc_utils/util/string.py - About 55 mins to fix

Cognitive Complexity

Cognitive Complexity is a measure of how difficult a unit of code is to intuitively understand. Unlike Cyclomatic Complexity, which determines how difficult your code will be to test, Cognitive Complexity tells you how difficult your code will be to read and comprehend.

A method's cognitive complexity is based on a few simple rules:

  • Code is not considered more complex when it uses shorthand that the language provides for collapsing multiple statements into one
  • Code is considered more complex for each "break in the linear flow of the code"
  • Code is considered more complex when "flow breaking structures are nested"

Further reading

Function isclass_by_name has a Cognitive Complexity of 9 (exceeds 5 allowed). Consider refactoring.
Open

def isclass_by_name(cls_name, cls_info):
    """Compares a class name with the names of the classes in `cls_info`.

    Args:
        cls_name (:obj:`str`): class name
Severity: Minor
Found in wc_utils/util/misc.py - About 55 mins to fix

Cognitive Complexity

Cognitive Complexity is a measure of how difficult a unit of code is to intuitively understand. Unlike Cyclomatic Complexity, which determines how difficult your code will be to test, Cognitive Complexity tells you how difficult your code will be to read and comprehend.

A method's cognitive complexity is based on a few simple rules:

  • Code is not considered more complex when it uses shorthand that the language provides for collapsing multiple statements into one
  • Code is considered more complex for each "break in the linear flow of the code"
  • Code is considered more complex when "flow breaking structures are nested"

Further reading

Function __init__ has a Cognitive Complexity of 9 (exceeds 5 allowed). Consider refactoring.
Open

    def __init__(self, value=''):
        """
        Args:
            value (:obj:`dict` or :obj:`str`): dictionary or string representation of the formula
Severity: Minor
Found in wc_utils/util/chem/core.py - About 55 mins to fix

Cognitive Complexity

Cognitive Complexity is a measure of how difficult a unit of code is to intuitively understand. Unlike Cyclomatic Complexity, which determines how difficult your code will be to test, Cognitive Complexity tells you how difficult your code will be to read and comprehend.

A method's cognitive complexity is based on a few simple rules:

  • Code is not considered more complex when it uses shorthand that the language provides for collapsing multiple statements into one
  • Code is considered more complex for each "break in the linear flow of the code"
  • Code is considered more complex when "flow breaking structures are nested"

Further reading

Function __eq__ has a Cognitive Complexity of 9 (exceeds 5 allowed). Consider refactoring.
Open

    def __eq__(self, other):
        """ Compare rows

        Args:
            other (:obj:`Row`): other row
Severity: Minor
Found in wc_utils/workbook/core.py - About 55 mins to fix

Cognitive Complexity

Cognitive Complexity is a measure of how difficult a unit of code is to intuitively understand. Unlike Cyclomatic Complexity, which determines how difficult your code will be to test, Cognitive Complexity tells you how difficult your code will be to read and comprehend.

A method's cognitive complexity is based on a few simple rules:

  • Code is not considered more complex when it uses shorthand that the language provides for collapsing multiple statements into one
  • Code is considered more complex for each "break in the linear flow of the code"
  • Code is considered more complex when "flow breaking structures are nested"

Further reading

Function get_major_micro_species has 7 arguments (exceeds 4 allowed). Consider refactoring.
Open

def get_major_micro_species(structure_or_structures, in_format, out_format,
Severity: Major
Found in wc_utils/util/chem/marvin.py - About 50 mins to fix

    Function __init__ has 7 arguments (exceeds 4 allowed). Consider refactoring.
    Open

        def __init__(self, path, title=None, description=None, keywords=None, version=None, language=None, creator=None):
    Severity: Major
    Found in wc_utils/workbook/io.py - About 50 mins to fix

      Method run_multiple has 7 arguments (exceeds 4 allowed). Consider refactoring.
      Open

          public static String[] run_multiple(String[] inStructures, String inStructureFormat, String outStructureFormat,
        Float ph, boolean majorTautomer, boolean keepExplicitHydrogens, boolean dearomatize) throws IOException, PluginException {
      Severity: Major
      Found in wc_utils/util/chem/GetMajorMicroSpecies.java - About 50 mins to fix

        Function __init__ has 7 arguments (exceeds 4 allowed). Consider refactoring.
        Open

            def __init__(self, path, title=None, description=None, keywords=None, version=None, language=None,
        Severity: Major
        Found in wc_utils/workbook/io.py - About 50 mins to fix

          Function __init__ has 7 arguments (exceeds 4 allowed). Consider refactoring.
          Open

              def __init__(self, path, title=None, description=None, keywords=None, version=None, language=None, creator=None):
          Severity: Major
          Found in wc_utils/workbook/io.py - About 50 mins to fix

            Method run_one has 7 arguments (exceeds 4 allowed). Consider refactoring.
            Open

                public static String run_one(String inStructure, String inStructureFormat, String outStructureFormat,
        Float ph, boolean majorTautomer, boolean keepExplicitHydrogens, boolean dearomatize) throws IOException, PluginException {
            Severity: Major
            Found in wc_utils/util/chem/GetMajorMicroSpecies.java - About 50 mins to fix

              Function apply has 6 arguments (exceeds 4 allowed). Consider refactoring.
              Open

                  def apply(self, ws, first_row, first_col, last_row, last_col, include_help_comments=False):
              Severity: Minor
              Found in wc_utils/workbook/io.py - About 45 mins to fix

                Avoid deeply nested control flow statements.
                Open

                                    if i2 in used2:
                        continue
                    try:
                Severity: Major
                Found in wc_utils/util/types.py - About 45 mins to fix

                  Function write_cell has 6 arguments (exceeds 4 allowed). Consider refactoring.
                  Open

                      def write_cell(self, xls_worksheet, sheet_name, i_row, i_col, value, format):
                  Severity: Minor
                  Found in wc_utils/workbook/io.py - About 45 mins to fix

                    Function get_package_root has a Cognitive Complexity of 8 (exceeds 5 allowed). Consider refactoring.
                    Open

                        def get_package_root(file_in_package):
        """ Obtain root directory of a package by following `__init__.py` files up the file hierarchy

        Args:
            file_in_package (:obj:`str`): pathname of a file in a package
                    Severity: Minor
                    Found in wc_utils/config/core.py - About 45 mins to fix

                    Cognitive Complexity

                    Cognitive Complexity is a measure of how difficult a unit of code is to intuitively understand. Unlike Cyclomatic Complexity, which determines how difficult your code will be to test, Cognitive Complexity tells you how difficult your code will be to read and comprehend.

                    A method's cognitive complexity is based on a few simple rules:

                    • Code is not considered more complex when it uses shorthand that the language provides for collapsing multiple statements into one
                    • Code is considered more complex for each "break in the linear flow of the code"
                    • Code is considered more complex when "flow breaking structures are nested"

                    Further reading

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