LucaCappelletti94/ucsc_genomes_downloader

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I, [2024-04-14T04:54:30.406130 #1]  INFO -- : Skipping file ./ucsc_genomes_downloader/utils/expand_bed_regions.py due to exception (CC::Engine::Analyzers::ParserError): `python2 /usr/src/app/lib/cc/engine/analyzers/python/parser.py` exited with code 1:
Traceback (most recent call last):
  File "/usr/src/app/lib/cc/engine/analyzers/python/parser.py", line 51, in <module>
    print(json.dumps(to_json(ast.parse(source))))
  File "/usr/local/python2/lib/python2.7/ast.py", line 37, in parse
    return compile(source, filename, mode, PyCF_ONLY_AST)
  File "<unknown>", line 8
    def expand_bed_regions(bed: pd.DataFrame, window_size: int, alignment: str = "center") -> pd.DataFrame:
                              ^
SyntaxError: invalid syntax


I, [2024-04-14T04:54:30.407419 #1]  INFO -- : Skipping file ./ucsc_genomes_downloader/genome.py due to exception (CC::Engine::Analyzers::ParserError): `python2 /usr/src/app/lib/cc/engine/analyzers/python/parser.py` exited with code 1:
Traceback (most recent call last):
  File "/usr/src/app/lib/cc/engine/analyzers/python/parser.py", line 51, in <module>
    print(json.dumps(to_json(ast.parse(source))))
  File "/usr/local/python2/lib/python2.7/ast.py", line 37, in parse
    return compile(source, filename, mode, PyCF_ONLY_AST)
  File "<unknown>", line 70
    assembly: str,
            ^
SyntaxError: invalid syntax


I, [2024-04-14T04:54:30.418277 #1]  INFO -- : Skipping file ./ucsc_genomes_downloader/utils/tessellate_bed.py due to exception (CC::Engine::Analyzers::ParserError): `python2 /usr/src/app/lib/cc/engine/analyzers/python/parser.py` exited with code 1:
Traceback (most recent call last):
  File "/usr/src/app/lib/cc/engine/analyzers/python/parser.py", line 51, in <module>
    print(json.dumps(to_json(ast.parse(source))))
  File "/usr/local/python2/lib/python2.7/ast.py", line 37, in parse
    return compile(source, filename, mode, PyCF_ONLY_AST)
  File "<unknown>", line 9
    def _tessellate_bed(chrom: str, chromStart: int, chromEnd: int, window_size: int) -> pd.DataFrame:
                             ^
SyntaxError: invalid syntax


I, [2024-04-14T04:54:30.422583 #1]  INFO -- : Skipping file ./ucsc_genomes_downloader/utils/gaps.py due to exception (CC::Engine::Analyzers::ParserError): `python2 /usr/src/app/lib/cc/engine/analyzers/python/parser.py` exited with code 1:
Traceback (most recent call last):
  File "/usr/src/app/lib/cc/engine/analyzers/python/parser.py", line 51, in <module>
    print(json.dumps(to_json(ast.parse(source))))
  File "/usr/local/python2/lib/python2.7/ast.py", line 37, in parse
    return compile(source, filename, mode, PyCF_ONLY_AST)
  File "<unknown>", line 5
    def multiprocessing_gaps(task: Tuple[str, str]):
                                 ^
SyntaxError: invalid syntax


I, [2024-04-14T04:54:30.429114 #1]  INFO -- : Skipping file ./ucsc_genomes_downloader/utils/ucsc.py due to exception (CC::Engine::Analyzers::ParserError): `python2 /usr/src/app/lib/cc/engine/analyzers/python/parser.py` exited with code 1:
Traceback (most recent call last):
  File "/usr/src/app/lib/cc/engine/analyzers/python/parser.py", line 51, in <module>
    print(json.dumps(to_json(ast.parse(source))))
  File "/usr/local/python2/lib/python2.7/ast.py", line 37, in parse
    return compile(source, filename, mode, PyCF_ONLY_AST)
  File "<unknown>", line 8
    def get_endpoint(endpoint: str) -> str:
                             ^
SyntaxError: invalid syntax


I, [2024-04-14T04:54:30.435265 #1]  INFO -- : Skipping file ./ucsc_genomes_downloader/utils/wiggle_bed_regions.py due to exception (CC::Engine::Analyzers::ParserError): `python2 /usr/src/app/lib/cc/engine/analyzers/python/parser.py` exited with code 1:
Traceback (most recent call last):
  File "/usr/src/app/lib/cc/engine/analyzers/python/parser.py", line 51, in <module>
    print(json.dumps(to_json(ast.parse(source))))
  File "/usr/local/python2/lib/python2.7/ast.py", line 37, in parse
    return compile(source, filename, mode, PyCF_ONLY_AST)
  File "<unknown>", line 6
    bed: pd.DataFrame,
       ^
SyntaxError: invalid syntax


I, [2024-04-14T04:54:30.439845 #1]  INFO -- : Skipping file ./ucsc_genomes_downloader/utils/extract_sequence.py due to exception (CC::Engine::Analyzers::ParserError): `python2 /usr/src/app/lib/cc/engine/analyzers/python/parser.py` exited with code 1:
Traceback (most recent call last):
  File "/usr/src/app/lib/cc/engine/analyzers/python/parser.py", line 51, in <module>
    print(json.dumps(to_json(ast.parse(source))))
  File "/usr/local/python2/lib/python2.7/ast.py", line 37, in parse
    return compile(source, filename, mode, PyCF_ONLY_AST)
  File "<unknown>", line 8
    def reverse_complement(nucleotides: str, mapping: Dict) -> str:
                                      ^
SyntaxError: invalid syntax