Function createCategories has a Cognitive Complexity of 7 (exceeds 5 allowed). Consider refactoring.

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function createCategories() {
    for(category of settings) {
        var categoryElement = document.createElement("div");
        categoryElement.className = "category";
        categoryElement.id = category.id;

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Function sanitizePath has a Cognitive Complexity of 7 (exceeds 5 allowed). Consider refactoring.

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    sanitizePath: function(path) {
        path = path.replaceAll("//", "/");
        if(path.indexOf("//") >= 0) {
            path = this.sanitizePath(path);
        }

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Function refreshTaskList has a Cognitive Complexity of 7 (exceeds 5 allowed). Consider refactoring.

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function refreshTaskList() {
    if(pids.toString() != pidsPrevious.toString()) { // If the task list has changed
        pidsPrevious = pids.slice();

        tasklist.innerHTML = `

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Avoid too many return statements within this function.

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    return result;

Avoid too many return statements within this function.

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    return "";

Avoid too many return statements within this function.

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    return /*html*/ `
    <b class='helpb' style='font-weight:inherit'><b>cls</b> clears console<br>
    <b>echo <a>[Message]</a></b> well, it's echo...<br>
    <b>run <b>[name of program]</b></b> opens a program<br>
    <b>close <b>[pid of program]</b></b> closes a program<br>

Avoid too many return statements within this function.

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      return "You have to activate the developer mode to enable js commands. Be careful though!";

Avoid too many return statements within this function.

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        return result;

Avoid too many return statements within this function.

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    return "#iofs:C:/system/icons/unknown_file.svg";

Avoid too many return statements within this function.

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      return "Error: Folder already exists";

Avoid too many return statements within this function.

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      return "Created folder";

Avoid too many return statements within this function.

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        return "'(Ancient variable, use settings menu) <br>' + Error: Setting not found";

Avoid too many return statements within this function.

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            return "'(Ancient variable, use settings menu) <br>' + changed setting - a reload may be required";

Avoid too many return statements within this function.

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            return ("(Ancient variable, use settings menu) <br>" + which + ": " + iofs.load(system.user.paths.userPath + "settings/" + which.split(" ")[0] + ".txt"));

Avoid too many return statements within this function.

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        return "Ran JS Command";

Avoid too many return statements within this function.

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    return(`${system.osDetails.name} Version: ${system.osDetails.version}`);

Avoid too many return statements within this function.

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    return "";

Avoid too many return statements within this function.

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    return "<b style='color:#f55; font-weight:inherit'>Command not found. Try /mc:help to get help.</b>";

Avoid too many return statements within this function.

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        return JSON.parse(iofs.load(path)).icon;

Avoid too many return statements within this function.

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    return "";