Marcello-Sega/pytim

432 new feature willard chandler density parameter (#433) #1373

Marcello Sega authored 546ad85f

complete00:00:23

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1	git clone	00:00:02
2	codeclimate validate-config	00:00:01	View output
`codeclimate validate-config No errors or warnings found in .codeclimate.json.`
3	codeclimate prepare	00:00:01	View output
`codeclimate prepare`
4	builder pull-engines	00:00:00	View output
`determining required images`
5	structure	00:00:03	View output
`12 Parser process id: 12 codeclimate-parser socket not present waiting 1s...`
6	duplication	00:00:03	View output
12 Parser process id: 12 codeclimate-parser socket not present waiting 1s... I, [2024-11-01T00:23:13.723870 #1] INFO -- : Skipping file ./pytim/observables/contactangle.py due to exception (CC::Engine::Analyzers::ParserError): `python2 /usr/src/app/lib/cc/engine/analyzers/python/parser.py` exited with code 1: Traceback (most recent call last): File "/usr/src/app/lib/cc/engine/analyzers/python/parser.py", line 51, in <module> print(json.dumps(to_json(ast.parse(source)))) File "/usr/local/python2/lib/python2.7/ast.py", line 37, in parse return compile(source, filename, mode, PyCF_ONLY_AST) File "<unknown>", line 379 r = (np.array(parmsc['T'])@s).T + np.array(parmsc['v']).T ^ SyntaxError: invalid syntax
7	fixme fixme engine documentation	00:00:00
8	pep8 pep8 engine documentation	00:00:01	View output
`.github/ docs/ .circleci/ setup.py pytim/`
9	radon radon engine documentation	00:00:01	View output
`Running radon3...`
10	sonar-python sonar-python engine documentation	00:00:04	View output
INFO: Java 1.8.0_111-internal Oracle Corporation (64-bit) INFO: Linux 4.4.0-1128-aws amd64 SLF4J: Class path contains multiple SLF4J bindings. SLF4J: Found binding in [jar:file:/usr/src/app/build/libs/sonarlint-core-2.17.0.899.jar!/org/slf4j/impl/StaticLoggerBinder.class] SLF4J: Found binding in [jar:file:/usr/src/app/build/libs/sonarlint-cli-2.1.0.566.jar!/org/slf4j/impl/StaticLoggerBinder.class] SLF4J: See http://www.slf4j.org/codes.html#multiple_bindings for an explanation. SLF4J: Actual binding is of type [ch.qos.logback.classic.util.ContextSelectorStaticBinder] INFO: Index files INFO: Invalid character encountered in file '/code/docs/source/IL-benzene2.jpg' at line 1 for encoding UTF-8. Please fix file content or configure the encoding to be used using property 'sonar.sourceEncoding'. INFO: Invalid character encountered in file '/code/docs/source/centering2.png' at line 1 for encoding UTF-8. Please fix file content or configure the encoding to be used using property 'sonar.sourceEncoding'. INFO: Invalid character encountered in file '/code/docs/source/micelle5.png' at line 1 for encoding UTF-8. Please fix file content or configure the encoding to be used using property 'sonar.sourceEncoding'. INFO: Invalid character encountered in file '/code/docs/source/nonintrinsic_water.png' at line 1 for encoding UTF-8. Please fix file content or configure the encoding to be used using property 'sonar.sourceEncoding'. INFO: Invalid character encountered in file '/code/docs/source/IL-benzene1.jpg' at line 1 for encoding UTF-8. Please fix file content or configure the encoding to be used using property 'sonar.sourceEncoding'. INFO: Invalid character encountered in file '/code/docs/source/micelle_atomic.png' at line 1 for encoding UTF-8. Please fix file content or configure the encoding to be used using property 'sonar.sourceEncoding'. INFO: Invalid character encountered in file '/code/docs/source/ILclusters.png' at line 1 for encoding UTF-8. Please fix file content or configure the encoding to be used using property 'sonar.sourceEncoding'. INFO: Invalid character encountered in file '/code/docs/source/logo2-small.png' at line 1 for encoding UTF-8. Please fix file content or configure the encoding to be used using property 'sonar.sourceEncoding'. INFO: Invalid character encountered in file '/code/docs/source/molecular.png' at line 1 for encoding UTF-8. Please fix file content or configure the encoding to be used using property 'sonar.sourceEncoding'. INFO: Invalid character encountered in file '/code/docs/source/atomic.png' at line 1 for encoding UTF-8. Please fix file content or configure the encoding to be used using property 'sonar.sourceEncoding'. INFO: Invalid character encountered in file '/code/docs/source/micelle3.png' at line 1 for encoding UTF-8. Please fix file content or configure the encoding to be used using property 'sonar.sourceEncoding'. INFO: Invalid character encountered in file '/code/docs/source/micelle4.png' at line 1 for encoding UTF-8. Please fix file content or configure the encoding to be used using property 'sonar.sourceEncoding'. INFO: Invalid character encountered in file '/code/docs/source/centering1.png' at line 1 for encoding UTF-8. Please fix file content or configure the encoding to be used using property 'sonar.sourceEncoding'. INFO: Invalid character encountered in file '/code/docs/source/nocluster.png' at line 1 for encoding UTF-8. Please fix file content or configure the encoding to be used using property 'sonar.sourceEncoding'. INFO: Invalid character encountered in file '/code/docs/source/cluster.png' at line 1 for encoding UTF-8. Please fix file content or configure the encoding to be used using property 'sonar.sourceEncoding'. INFO: Invalid character encountered in file '/code/docs/source/intrinsic_lj.png' at line 1 for encoding UTF-8. Please fix file content or configure the encoding to be used using property 'sonar.sourceEncoding'. INFO: Invalid character encountered in file '/code/docs/source/logo1.png' at line 1 for encoding UTF-8. Please fix file content or configure the encoding to be used using property 'sonar.sourceEncoding'. INFO: Invalid character encountered in file '/code/docs/source/micelle7.png' at line 1 for encoding UTF-8. Please fix file content or configure the encoding to be used using property 'sonar.sourceEncoding'. INFO: Invalid character encountered in file '/code/docs/source/centering3.png' at line 1 for encoding UTF-8. Please fix file content or configure the encoding to be used using property 'sonar.sourceEncoding'. INFO: Invalid character encountered in file '/code/docs/source/micelle6.png' at line 1 for encoding UTF-8. Please fix file content or configure the encoding to be used using property 'sonar.sourceEncoding'. INFO: Invalid character encountered in file '/code/docs/source/pytim.ico' at line 1 for encoding UTF-8. Please fix file content or configure the encoding to be used using property 'sonar.sourceEncoding'. INFO: Invalid character encountered in file '/code/docs/source/example_water.png' at line 1 for encoding UTF-8. Please fix file content or configure the encoding to be used using property 'sonar.sourceEncoding'. INFO: Invalid character encountered in file '/code/docs/source/micelle_molecular.png' at line 1 for encoding UTF-8. Please fix file content or configure the encoding to be used using property 'sonar.sourceEncoding'. INFO: Invalid character encountered in file '/code/docs/source/micelle2.png' at line 1 for encoding UTF-8. Please fix file content or configure the encoding to be used using property 'sonar.sourceEncoding'. INFO: Invalid character encountered in file '/code/docs/source/micelle1.png' at line 1 for encoding UTF-8. Please fix file content or configure the encoding to be used using property 'sonar.sourceEncoding'. INFO: Invalid character encountered in file '/code/docs/source/centering4.png' at line 1 for encoding UTF-8. Please fix file content or configure the encoding to be used using property 'sonar.sourceEncoding'. INFO: Invalid character encountered in file '/code/docs/source/logo.png' at line 1 for encoding UTF-8. Please fix file content or configure the encoding to be used using property 'sonar.sourceEncoding'. INFO: Invalid character encountered in file '/code/pytim/data/water_droplet_cylindrical.xtc' at line 1 for encoding UTF-8. Please fix file content or configure the encoding to be used using property 'sonar.sourceEncoding'. INFO: Invalid character encountered in file '/code/pytim/data/logo.pdf' at line 2 for encoding UTF-8. Please fix file content or configure the encoding to be used using property 'sonar.sourceEncoding'. INFO: Invalid character encountered in file '/code/pytim/data/LJ.short.xtc' at line 1 for encoding UTF-8. Please fix file content or configure the encoding to be used using property 'sonar.sourceEncoding'. INFO: Invalid character encountered in file '/code/pytim/data/water_lmp.xtc' at line 1 for encoding UTF-8. Please fix file content or configure the encoding to be used using property 'sonar.sourceEncoding'. INFO: Invalid character encountered in file '/code/pytim/data/water.xtc' at line 1 for encoding UTF-8. Please fix file content or configure the encoding to be used using property 'sonar.sourceEncoding'. INFO: 146 files indexed INFO: ------------------------------------------------------------------------ INFO: EXECUTION SUCCESS INFO: ------------------------------------------------------------------------ INFO: Total time: 2.764s INFO: Final Memory: 9M/416M INFO: ------------------------------------------------------------------------