Marcello-Sega/pytim

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codeclimate prepare

determining required images
docker pull codeclimate/codeclimate-fixme:b188
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Status: Downloaded newer image for registry.prod.codeclimate.net/codeclimate/codeclimate-fixme:b188
docker pull codeclimate/codeclimate-pep8:b25
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docker pull codeclimate/codeclimate-radon:b695
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12
Parser process id: 12
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12
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I, [2024-12-01T06:49:00.707876 #1]  INFO -- : Skipping file ./pytim/observables/contactangle.py due to exception (CC::Engine::Analyzers::ParserError): `python2 /usr/src/app/lib/cc/engine/analyzers/python/parser.py` exited with code 1:
Traceback (most recent call last):
  File "/usr/src/app/lib/cc/engine/analyzers/python/parser.py", line 51, in <module>
    print(json.dumps(to_json(ast.parse(source))))
  File "/usr/local/python2/lib/python2.7/ast.py", line 37, in parse
    return compile(source, filename, mode, PyCF_ONLY_AST)
  File "<unknown>", line 379
    r = (np.array(parmsc['T'])@s).T + np.array(parmsc['v']).T
                              ^
SyntaxError: invalid syntax

.github/ docs/ .circleci/ setup.py pytim/

Running radon3...

INFO: Java 1.8.0_111-internal Oracle Corporation (64-bit)
INFO: Linux 4.4.0-1128-aws amd64
SLF4J: Class path contains multiple SLF4J bindings.
SLF4J: Found binding in [jar:file:/usr/src/app/build/libs/sonarlint-core-2.17.0.899.jar!/org/slf4j/impl/StaticLoggerBinder.class]
SLF4J: Found binding in [jar:file:/usr/src/app/build/libs/sonarlint-cli-2.1.0.566.jar!/org/slf4j/impl/StaticLoggerBinder.class]
SLF4J: See http://www.slf4j.org/codes.html#multiple_bindings for an explanation.
SLF4J: Actual binding is of type [ch.qos.logback.classic.util.ContextSelectorStaticBinder]
INFO: Index files
INFO: Invalid character encountered in file '/code/docs/source/IL-benzene2.jpg' at line 1 for encoding UTF-8. Please fix file content or configure the encoding to be used using property 'sonar.sourceEncoding'.
INFO: Invalid character encountered in file '/code/docs/source/centering2.png' at line 1 for encoding UTF-8. Please fix file content or configure the encoding to be used using property 'sonar.sourceEncoding'.
INFO: Invalid character encountered in file '/code/docs/source/micelle5.png' at line 1 for encoding UTF-8. Please fix file content or configure the encoding to be used using property 'sonar.sourceEncoding'.
INFO: Invalid character encountered in file '/code/docs/source/nonintrinsic_water.png' at line 1 for encoding UTF-8. Please fix file content or configure the encoding to be used using property 'sonar.sourceEncoding'.
INFO: Invalid character encountered in file '/code/docs/source/IL-benzene1.jpg' at line 1 for encoding UTF-8. Please fix file content or configure the encoding to be used using property 'sonar.sourceEncoding'.
INFO: Invalid character encountered in file '/code/docs/source/micelle_atomic.png' at line 1 for encoding UTF-8. Please fix file content or configure the encoding to be used using property 'sonar.sourceEncoding'.
INFO: Invalid character encountered in file '/code/docs/source/ILclusters.png' at line 1 for encoding UTF-8. Please fix file content or configure the encoding to be used using property 'sonar.sourceEncoding'.
INFO: Invalid character encountered in file '/code/docs/source/logo2-small.png' at line 1 for encoding UTF-8. Please fix file content or configure the encoding to be used using property 'sonar.sourceEncoding'.
INFO: Invalid character encountered in file '/code/docs/source/molecular.png' at line 1 for encoding UTF-8. Please fix file content or configure the encoding to be used using property 'sonar.sourceEncoding'.
INFO: Invalid character encountered in file '/code/docs/source/atomic.png' at line 1 for encoding UTF-8. Please fix file content or configure the encoding to be used using property 'sonar.sourceEncoding'.
INFO: Invalid character encountered in file '/code/docs/source/micelle3.png' at line 1 for encoding UTF-8. Please fix file content or configure the encoding to be used using property 'sonar.sourceEncoding'.
INFO: Invalid character encountered in file '/code/docs/source/micelle4.png' at line 1 for encoding UTF-8. Please fix file content or configure the encoding to be used using property 'sonar.sourceEncoding'.
INFO: Invalid character encountered in file '/code/docs/source/centering1.png' at line 1 for encoding UTF-8. Please fix file content or configure the encoding to be used using property 'sonar.sourceEncoding'.
INFO: Invalid character encountered in file '/code/docs/source/nocluster.png' at line 1 for encoding UTF-8. Please fix file content or configure the encoding to be used using property 'sonar.sourceEncoding'.
INFO: Invalid character encountered in file '/code/docs/source/cluster.png' at line 1 for encoding UTF-8. Please fix file content or configure the encoding to be used using property 'sonar.sourceEncoding'.
INFO: Invalid character encountered in file '/code/docs/source/intrinsic_lj.png' at line 1 for encoding UTF-8. Please fix file content or configure the encoding to be used using property 'sonar.sourceEncoding'.
INFO: Invalid character encountered in file '/code/docs/source/logo1.png' at line 1 for encoding UTF-8. Please fix file content or configure the encoding to be used using property 'sonar.sourceEncoding'.
INFO: Invalid character encountered in file '/code/docs/source/micelle7.png' at line 1 for encoding UTF-8. Please fix file content or configure the encoding to be used using property 'sonar.sourceEncoding'.
INFO: Invalid character encountered in file '/code/docs/source/centering3.png' at line 1 for encoding UTF-8. Please fix file content or configure the encoding to be used using property 'sonar.sourceEncoding'.
INFO: Invalid character encountered in file '/code/docs/source/micelle6.png' at line 1 for encoding UTF-8. Please fix file content or configure the encoding to be used using property 'sonar.sourceEncoding'.
INFO: Invalid character encountered in file '/code/docs/source/pytim.ico' at line 1 for encoding UTF-8. Please fix file content or configure the encoding to be used using property 'sonar.sourceEncoding'.
INFO: Invalid character encountered in file '/code/docs/source/example_water.png' at line 1 for encoding UTF-8. Please fix file content or configure the encoding to be used using property 'sonar.sourceEncoding'.
INFO: Invalid character encountered in file '/code/docs/source/micelle_molecular.png' at line 1 for encoding UTF-8. Please fix file content or configure the encoding to be used using property 'sonar.sourceEncoding'.
INFO: Invalid character encountered in file '/code/docs/source/micelle2.png' at line 1 for encoding UTF-8. Please fix file content or configure the encoding to be used using property 'sonar.sourceEncoding'.
INFO: Invalid character encountered in file '/code/docs/source/micelle1.png' at line 1 for encoding UTF-8. Please fix file content or configure the encoding to be used using property 'sonar.sourceEncoding'.
INFO: Invalid character encountered in file '/code/docs/source/centering4.png' at line 1 for encoding UTF-8. Please fix file content or configure the encoding to be used using property 'sonar.sourceEncoding'.
INFO: Invalid character encountered in file '/code/docs/source/logo.png' at line 1 for encoding UTF-8. Please fix file content or configure the encoding to be used using property 'sonar.sourceEncoding'.
INFO: Invalid character encountered in file '/code/pytim/data/water_droplet_cylindrical.xtc' at line 1 for encoding UTF-8. Please fix file content or configure the encoding to be used using property 'sonar.sourceEncoding'.
INFO: Invalid character encountered in file '/code/pytim/data/logo.pdf' at line 2 for encoding UTF-8. Please fix file content or configure the encoding to be used using property 'sonar.sourceEncoding'.
INFO: Invalid character encountered in file '/code/pytim/data/LJ.short.xtc' at line 1 for encoding UTF-8. Please fix file content or configure the encoding to be used using property 'sonar.sourceEncoding'.
INFO: Invalid character encountered in file '/code/pytim/data/water_lmp.xtc' at line 1 for encoding UTF-8. Please fix file content or configure the encoding to be used using property 'sonar.sourceEncoding'.
INFO: Invalid character encountered in file '/code/pytim/data/water.xtc' at line 1 for encoding UTF-8. Please fix file content or configure the encoding to be used using property 'sonar.sourceEncoding'.
INFO: 146 files indexed
INFO: ------------------------------------------------------------------------
INFO: EXECUTION SUCCESS
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INFO: Total time: 2.972s
INFO: Final Memory: 9M/417M
INFO: ------------------------------------------------------------------------