File distributions.py has 1036 lines of code (exceeds 250 allowed). Consider refactoring.

Open

#!/usr/bin/python
# -*- coding: utf-8 -*-
##
# distributions.py: module for probability distributions.
##

File smc.py has 784 lines of code (exceeds 250 allowed). Consider refactoring.

Open

#!/usr/bin/python
# -*- coding: utf-8 -*-
##
# smc.py: Sequential Monte Carlo module
##

File derived_models.py has 673 lines of code (exceeds 250 allowed). Consider refactoring.

Open

#!/usr/bin/python
# -*- coding: utf-8 -*-
##
# derived_models.py: Models that decorate and extend other models.
##

File test_distributions.py has 656 lines of code (exceeds 250 allowed). Consider refactoring.

Open

#!/usr/bin/python
# -*- coding: utf-8 -*-
##
# test_distributions.py: Checks that distribution objects act as expected.
##

File abstract_model.py has 551 lines of code (exceeds 250 allowed). Consider refactoring.

Open

#!/usr/bin/python
# -*- coding: utf-8 -*-
##
# abstract_model.py: Abstract interfaces for models with different levels of
#     functionality.

File domains.py has 501 lines of code (exceeds 250 allowed). Consider refactoring.

Open

#!/usr/bin/python
# -*- coding: utf-8 -*-
##
# domains.py: module for domains of model outcomes
##

File utils.py has 479 lines of code (exceeds 250 allowed). Consider refactoring.

Open

#!/usr/bin/python
# -*- coding: utf-8 -*-
##
# utils.py : some auxiliary functions
##

Function __init__ has a Cognitive Complexity of 41 (exceeds 5 allowed). Consider refactoring.

Open

    def __init__(
            self, underlying_model, random_walk_idxs='all', 
            fixed_covariance=None, diagonal=True, 
            scale_mult=None, model_transformation=None
        ):

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File base_test.py has 419 lines of code (exceeds 250 allowed). Consider refactoring.

Open

#!/usr/bin/python
# -*- coding: utf-8 -*-
##
# base_test.py: Base class for derandomized test classes.
##

File test_concrete_models.py has 418 lines of code (exceeds 250 allowed). Consider refactoring.

Open

#!/usr/bin/python
# -*- coding: utf-8 -*-
##
# test_concrete_models.py: Checks that built-in instances of Model work properly.
##

Function design_expparams_field has a Cognitive Complexity of 29 (exceeds 5 allowed). Consider refactoring.

Open

    def design_expparams_field(self,
            guess, field,
            cost_scale_k=1.0, disp=False,
            maxiter=None, maxfun=None,
            store_guess=False, grad_h=None, cost_mult=False

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File test_models.py has 290 lines of code (exceeds 250 allowed). Consider refactoring.

Open

#!/usr/bin/python
# -*- coding: utf-8 -*-
##
# test_models.py: Simple models for testing inference engines.
##

File expdesign.py has 289 lines of code (exceeds 250 allowed). Consider refactoring.

Open

#!/usr/bin/python
# -*- coding: utf-8 -*-
##
# expdesign.py: Adaptive experimental design algorithms.
##

Function __call__ has a Cognitive Complexity of 21 (exceeds 5 allowed). Consider refactoring.

Open

    def __call__(self, model, particle_dist,
        n_particles=None,
        precomputed_mean=None, precomputed_cov=None
    ):
        """

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SMCUpdater has 23 functions (exceeds 20 allowed). Consider refactoring.

Open

class SMCUpdater(ParticleDistribution):
    r"""
    Creates a new Sequential Monte carlo updater, using the algorithm of
    [GFWC12]_.

Function perf_test_multiple has a Cognitive Complexity of 18 (exceeds 5 allowed). Consider refactoring.

Open

def perf_test_multiple(
        n_trials,
        model, n_particles, prior,
        n_exp, heuristic_class,
        true_model=None, true_prior=None, true_mps=None,

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File perf_testing.py has 261 lines of code (exceeds 250 allowed). Consider refactoring.

Open

#!/usr/bin/python
# -*- coding: utf-8 -*-
##
# perf_testing.py: Tests the performance of SMC estimation and likelihood
#     calls.

File bases.py has 259 lines of code (exceeds 250 allowed). Consider refactoring.

Open

#!/usr/bin/python
# -*- coding: utf-8 -*-
##
# bases.py: Representations of Hermitian bases for tomography.
##

File legacy.py has 257 lines of code (exceeds 250 allowed). Consider refactoring.

Open

#!/usr/bin/python
# -*- coding: utf-8 -*-
##
# SMC.py: Tomgraphic models module
##

Simulatable has 21 functions (exceeds 20 allowed). Consider refactoring.

Open

class Simulatable(with_metaclass(abc.ABCMeta, object)):
    r"""
    Represents a system which can be simulated according to
    various model parameters and experimental control parameters
    in order to produce representative data.