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Method toDoc has a Cognitive Complexity of 8 (exceeds 5 allowed). Consider refactoring.
Open

    private PmmXmlDoc toDoc() throws InvalidSettingsException {
        PmmXmlDoc doc = new PmmXmlDoc();

        ParametricModel pm = finalizePM(-1);
Severity: Minor
Found in de.bund.bfr.knime.pmm.nodes/src/de/bund/bfr/knime/pmm/manualmodelconf/ui/MMC_M.java - About 45 mins to fix

Cognitive Complexity

Cognitive Complexity is a measure of how difficult a unit of code is to intuitively understand. Unlike Cyclomatic Complexity, which determines how difficult your code will be to test, Cognitive Complexity tells you how difficult your code will be to read and comprehend.

A method's cognitive complexity is based on a few simple rules:

  • Code is not considered more complex when it uses shorthand that the language provides for collapsing multiple statements into one
  • Code is considered more complex for each "break in the linear flow of the code"
  • Code is considered more complex when "flow breaking structures are nested"

Further reading

Avoid deeply nested control flow statements.
Open

                        if (row == 0) {
                            pm.setDepCategory(categoryStr);
                            pm.setDepUnit(unit);
                        } else if (isIndep != null && isIndep instanceof Boolean && ((Boolean) isIndep)) {
                            pm.setIndepCategory(param, categoryStr);
Severity: Major
Found in de.bund.bfr.knime.pmm.nodes/src/de/bund/bfr/knime/pmm/manualmodelconf/ui/MMC_M.java - About 45 mins to fix

Avoid deeply nested control flow statements.
Open

                            if (diff.getChanges().size() == 0) {
                                doc.remove(pxecL);
                                break;
                            }
Severity: Major
Found in de.bund.bfr.knime.pmm.nodes/src/de/bund/bfr/knime/pmm/manualmodelconf/ManualModelEditorNodeDialog.java - About 45 mins to fix

Avoid deeply nested control flow statements.
Open

                        if (el instanceof CatalogModelXml) {
                            cmx = (CatalogModelXml) el;
                            break;
                        }
Severity: Major
Found in de.bund.bfr.knime.pmm.nodes/src/de/bund/bfr/knime/pmm/modelcatalogwriter/ModelCatalogWriterNodeModel.java - About 45 mins to fix

Method readDataTable has a Cognitive Complexity of 8 (exceeds 5 allowed). Consider refactoring.
Open

    private void readDataTable() {
        dependentParameters = new LinkedHashMap<>();
        primaryModelNames = new LinkedHashMap<>();
        independentParameterCategories = new LinkedHashMap<>();
Severity: Minor
Found in de.bund.bfr.knime.pmm.nodes/src/de/bund/bfr/knime/pmm/modelanddatajoiner/SecondaryJoiner.java - About 45 mins to fix

Cognitive Complexity

Cognitive Complexity is a measure of how difficult a unit of code is to intuitively understand. Unlike Cyclomatic Complexity, which determines how difficult your code will be to test, Cognitive Complexity tells you how difficult your code will be to read and comprehend.

A method's cognitive complexity is based on a few simple rules:

  • Code is not considered more complex when it uses shorthand that the language provides for collapsing multiple statements into one
  • Code is considered more complex for each "break in the linear flow of the code"
  • Code is considered more complex when "flow breaking structures are nested"

Further reading

Avoid deeply nested control flow statements.
Open

                        if (primaryModelNames.get(id).equals(modelName)) {
                            modelID = id;
                            break;
                        }
Severity: Major
Found in de.bund.bfr.knime.pmm.nodes/src/de/bund/bfr/knime/pmm/modelanddatajoiner/SecondaryJoiner.java - About 45 mins to fix

Method condSplit has a Cognitive Complexity of 8 (exceeds 5 allowed). Consider refactoring.
Open

    private List<String> condSplit(final String misc) {
        if (misc == null) {
            return null;
        }
        List<String> result = new ArrayList<>();
Severity: Minor
Found in de.bund.bfr.knime.pmm.nodes/src/de/bund/bfr/knime/pmm/combaseio/lib/CombaseReader.java - About 45 mins to fix

Cognitive Complexity

Cognitive Complexity is a measure of how difficult a unit of code is to intuitively understand. Unlike Cyclomatic Complexity, which determines how difficult your code will be to test, Cognitive Complexity tells you how difficult your code will be to read and comprehend.

A method's cognitive complexity is based on a few simple rules:

  • Code is not considered more complex when it uses shorthand that the language provides for collapsing multiple statements into one
  • Code is considered more complex for each "break in the linear flow of the code"
  • Code is considered more complex when "flow breaking structures are nested"

Further reading

Avoid deeply nested control flow statements.
Open

                            if (tslist.containsKey(condID)) tss.put(condID, tslist.get(condID));
                            else tss.put(condID, ts);
Severity: Major
Found in de.bund.bfr.knime.pmm.nodes/src/de/bund/bfr/knime/pmm/manualmodelconf/ManualModelConfNodeModel.java - About 45 mins to fix

Avoid deeply nested control flow statements.
Open

                        if (!CellIO.getNameList(params).contains(
                                newDepVarSecName)) {
                            continue;
                        }
Severity: Major
Found in de.bund.bfr.knime.pmm.nodes/src/de/bund/bfr/knime/pmm/modelanddatajoiner/SecondaryJoiner.java - About 45 mins to fix

Avoid deeply nested control flow statements.
Open

                        for (PmmXmlElementConvertable el : miscs
                                .getElementSet()) {
                            MiscXml element = (MiscXml) el;

                            if (paramsConvertTo.containsKey(element.name)) {
Severity: Major
Found in de.bund.bfr.knime.pmm.nodes/src/de/bund/bfr/knime/pmm/modelanddatajoiner/SecondaryJoiner.java - About 45 mins to fix

Avoid deeply nested control flow statements.
Open

                            if (!Double.isNaN(guess.y)) {
                                maxGuessValues.add(guess.y);
                            } else {
                                maxGuessValues.add(null);
                            }
Severity: Major
Found in de.bund.bfr.knime.pmm.nodes/src/de/bund/bfr/knime/pmm/modelestimation/SecondaryEstimationThread.java - About 45 mins to fix

Avoid deeply nested control flow statements.
Open

                            for (PmmXmlElementConvertable el : estModel.getElementSet()) {
                                if (el instanceof EstModelXml) {
                                    emx = (EstModelXml) el;
                                    break;
                                }
Severity: Major
Found in de.bund.bfr.knime.pmm.nodes/src/de/bund/bfr/knime/pmm/dbdelete/DatabaseDeleteNodeModel.java - About 45 mins to fix

Avoid deeply nested control flow statements.
Open

                        if (param.equals(element.name)) {
                            paramValue = element.value;
                            miscUnitMaps.get(id).put(param, element.unit);
                            break;
                        }
Severity: Major
Found in de.bund.bfr.knime.pmm.nodes/src/de/bund/bfr/knime/pmm/secondarymodelanddataview/TableReader.java - About 45 mins to fix

Avoid deeply nested control flow statements.
Open

                        for (String param : miscParams) {
                            miscs.get(param).remove(i);
                        }
Severity: Major
Found in de.bund.bfr.knime.pmm.nodes/src/de/bund/bfr/knime/pmm/secondarymodelanddataview/TableReader.java - About 45 mins to fix

Avoid deeply nested control flow statements.
Open

                        for (int i = 0; i < set.getSelectedValuesX().get(param)
                                .size(); i++) {
                            if (set.getSelectedValuesX().get(param).get(i)) {
                                usedValues.add(valuesList.get(i));
                            }
Severity: Major
Found in de.bund.bfr.knime.pmm.nodes/src/de/bund/bfr/knime/pmm/secondarymodelanddataview/SecondaryModelAndDataViewNodeModel.java - About 45 mins to fix

Avoid deeply nested control flow statements.
Open

                        if (el instanceof CatalogModelXml) {
                            cmx = (CatalogModelXml) el;
                            break;
                        }
Severity: Major
Found in de.bund.bfr.knime.pmm.nodes/src/de/bund/bfr/knime/pmm/modelcatalogwriter/ModelCatalogWriterNodeModel.java - About 45 mins to fix

Avoid deeply nested control flow statements.
Open

                        if (!replace.containsKey(iv.name)) {
                            error = true;
                            break;
                        }
Severity: Major
Found in de.bund.bfr.knime.pmm.nodes/src/de/bund/bfr/knime/pmm/modelanddatajoiner/SecondaryJoiner.java - About 45 mins to fix

Method sortGlobalModels has a Cognitive Complexity of 8 (exceeds 5 allowed). Consider refactoring.
Open

    public static Map<Integer, Map<Integer, List<KnimeTuple>>> sortGlobalModels(List<KnimeTuple> tuples) {
        // Sort tertiary models
        Map<Integer, Map<Integer, List<KnimeTuple>>> gms = new HashMap<>();
        for (KnimeTuple tuple : tuples) {
            Integer gmID = tuple.getInt(Model2Schema.ATT_GLOBAL_MODEL_ID);
Severity: Minor
Found in de.bund.bfr.knime.pmm.nodes/src/de/bund/bfr/knime/pmm/common/writer/TableReader.java - About 45 mins to fix

Cognitive Complexity

Cognitive Complexity is a measure of how difficult a unit of code is to intuitively understand. Unlike Cyclomatic Complexity, which determines how difficult your code will be to test, Cognitive Complexity tells you how difficult your code will be to read and comprehend.

A method's cognitive complexity is based on a few simple rules:

  • Code is not considered more complex when it uses shorthand that the language provides for collapsing multiple statements into one
  • Code is considered more complex for each "break in the linear flow of the code"
  • Code is considered more complex when "flow breaking structures are nested"

Further reading

Avoid deeply nested control flow statements.
Open

                        if (miscValues.containsKey(indepVars.get(i))) {
                            parameters.put(indepVars.get(i),
                                    miscValues.get(indepVars.get(i)));
                        }
Severity: Major
Found in de.bund.bfr.knime.pmm.nodes/src/de/bund/bfr/knime/pmm/modelselectiontertiary/TableReader.java - About 45 mins to fix

Method parse has 6 arguments (exceeds 4 allowed). Consider refactoring.
Open

        private static TwoStepTertiaryModel parse(List<List<KnimeTuple>> tupleList, boolean isPMFX, int modelNum,
                String mdName, Metadata metadata, String notes) {
Severity: Minor
Found in de.bund.bfr.knime.pmm.nodes/src/de/bund/bfr/knime/pmm/common/writer/WriterUtils.java - About 45 mins to fix
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