Showing 6,856 of 14,752 total issues
Method parseMiscs has a Cognitive Complexity of 6 (exceeds 5 allowed). Consider refactoring. Open
public static PmmXmlDoc parseMiscs(Map<String, Double> miscs) {
PmmXmlDoc cell = new PmmXmlDoc();
if (miscs != null) {
// First misc item has id -1 and the rest of items have negative- Read upRead up
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Cognitive Complexity
Cognitive Complexity is a measure of how difficult a unit of code is to intuitively understand. Unlike Cyclomatic Complexity, which determines how difficult your code will be to test, Cognitive Complexity tells you how difficult your code will be to read and comprehend.
A method's cognitive complexity is based on a few simple rules:
- Code is not considered more complex when it uses shorthand that the language provides for collapsing multiple statements into one
- Code is considered more complex for each "break in the linear flow of the code"
- Code is considered more complex when "flow breaking structures are nested"
Further reading
Method getAssignments has a Cognitive Complexity of 6 (exceeds 5 allowed). Consider refactoring. Open
@Override
public String getAssignments() {
Map<String, Map<String, String>> assignmentsMap = new LinkedHashMap<>();
for (String modelID : primaryVariableBoxes.keySet()) {- Read upRead up
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Cognitive Complexity
Cognitive Complexity is a measure of how difficult a unit of code is to intuitively understand. Unlike Cyclomatic Complexity, which determines how difficult your code will be to test, Cognitive Complexity tells you how difficult your code will be to read and comprehend.
A method's cognitive complexity is based on a few simple rules:
- Code is not considered more complex when it uses shorthand that the language provides for collapsing multiple statements into one
- Code is considered more complex for each "break in the linear flow of the code"
- Code is considered more complex when "flow breaking structures are nested"
Further reading
Method loadSettingsFrom has a Cognitive Complexity of 6 (exceeds 5 allowed). Consider refactoring. Open
@Override
protected void loadSettingsFrom(NodeSettingsRO settings, DataTableSpec[] specs) throws NotConfigurableException {
String fileName;
int useStartValue;
double startElim;- Read upRead up
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Cognitive Complexity
Cognitive Complexity is a measure of how difficult a unit of code is to intuitively understand. Unlike Cyclomatic Complexity, which determines how difficult your code will be to test, Cognitive Complexity tells you how difficult your code will be to read and comprehend.
A method's cognitive complexity is based on a few simple rules:
- Code is not considered more complex when it uses shorthand that the language provides for collapsing multiple statements into one
- Code is considered more complex for each "break in the linear flow of the code"
- Code is considered more complex when "flow breaking structures are nested"
Further reading
Method execute has a Cognitive Complexity of 6 (exceeds 5 allowed). Consider refactoring. Open
@Override
protected BufferedDataTable[] execute(final BufferedDataTable[] inData,
final ExecutionContext exec) throws Exception {
// Gets model type from the document annotation- Read upRead up
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Cognitive Complexity
Cognitive Complexity is a measure of how difficult a unit of code is to intuitively understand. Unlike Cyclomatic Complexity, which determines how difficult your code will be to test, Cognitive Complexity tells you how difficult your code will be to read and comprehend.
A method's cognitive complexity is based on a few simple rules:
- Code is not considered more complex when it uses shorthand that the language provides for collapsing multiple statements into one
- Code is considered more complex for each "break in the linear flow of the code"
- Code is considered more complex when "flow breaking structures are nested"
Further reading
Method isValid has a Cognitive Complexity of 6 (exceeds 5 allowed). Consider refactoring. Open
@Override
public boolean isValid() {
for (int id : variableBoxes.keySet()) {
for (String param : variableBoxes.get(id).keySet()) {
if (variableBoxes.get(id).get(param).getSelectedItem() == null) {- Read upRead up
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Cognitive Complexity
Cognitive Complexity is a measure of how difficult a unit of code is to intuitively understand. Unlike Cyclomatic Complexity, which determines how difficult your code will be to test, Cognitive Complexity tells you how difficult your code will be to read and comprehend.
A method's cognitive complexity is based on a few simple rules:
- Code is not considered more complex when it uses shorthand that the language provides for collapsing multiple statements into one
- Code is considered more complex for each "break in the linear flow of the code"
- Code is considered more complex when "flow breaking structures are nested"
Further reading
Method getAssignments has a Cognitive Complexity of 6 (exceeds 5 allowed). Consider refactoring. Open
@Override
public String getAssignments() {
Map<String, List<Map<String, String>>> assignmentsMap = new LinkedHashMap<>();
for (String model : comboBoxes.keySet()) {- Read upRead up
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Cognitive Complexity
Cognitive Complexity is a measure of how difficult a unit of code is to intuitively understand. Unlike Cyclomatic Complexity, which determines how difficult your code will be to test, Cognitive Complexity tells you how difficult your code will be to read and comprehend.
A method's cognitive complexity is based on a few simple rules:
- Code is not considered more complex when it uses shorthand that the language provides for collapsing multiple statements into one
- Code is considered more complex for each "break in the linear flow of the code"
- Code is considered more complex when "flow breaking structures are nested"
Further reading
Method checkTimeSeriesDeletion has a Cognitive Complexity of 6 (exceeds 5 allowed). Consider refactoring. Open
private boolean checkTimeSeriesDeletion(Connection conn, Integer tsID) {
boolean result = true;
if (tsID == null)
return false;
String sql = "SELECT " + DBKernel.delimitL("ID") + " FROM " + DBKernel.delimitL("GeschaetzteModelle")- Read upRead up
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Cognitive Complexity
Cognitive Complexity is a measure of how difficult a unit of code is to intuitively understand. Unlike Cyclomatic Complexity, which determines how difficult your code will be to test, Cognitive Complexity tells you how difficult your code will be to read and comprehend.
A method's cognitive complexity is based on a few simple rules:
- Code is not considered more complex when it uses shorthand that the language provides for collapsing multiple statements into one
- Code is considered more complex for each "break in the linear flow of the code"
- Code is considered more complex when "flow breaking structures are nested"
Further reading
Method checkPrimaryDeletion has a Cognitive Complexity of 6 (exceeds 5 allowed). Consider refactoring. Open
private boolean checkPrimaryDeletion(Connection conn, Integer estID) {
boolean result = true;
if (estID == null)
return false;
String sql = "SELECT " + DBKernel.delimitL("GeschaetztesSekundaermodell") + " FROM "- Read upRead up
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Cognitive Complexity
Cognitive Complexity is a measure of how difficult a unit of code is to intuitively understand. Unlike Cyclomatic Complexity, which determines how difficult your code will be to test, Cognitive Complexity tells you how difficult your code will be to read and comprehend.
A method's cognitive complexity is based on a few simple rules:
- Code is not considered more complex when it uses shorthand that the language provides for collapsing multiple statements into one
- Code is considered more complex for each "break in the linear flow of the code"
- Code is considered more complex when "flow breaking structures are nested"
Further reading
Method write has a Cognitive Complexity of 6 (exceeds 5 allowed). Consider refactoring. Open
@Override
public void write(List<KnimeTuple> tuples, boolean isPMFX, String dir, String mdName, Metadata metadata,
boolean splitModels, String notes, ExecutionContext exec) throws Exception {
final String modelExtension = isPMFX ? "pmf" : "sbml";- Read upRead up
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Cognitive Complexity
Cognitive Complexity is a measure of how difficult a unit of code is to intuitively understand. Unlike Cyclomatic Complexity, which determines how difficult your code will be to test, Cognitive Complexity tells you how difficult your code will be to read and comprehend.
A method's cognitive complexity is based on a few simple rules:
- Code is not considered more complex when it uses shorthand that the language provides for collapsing multiple statements into one
- Code is considered more complex for each "break in the linear flow of the code"
- Code is considered more complex when "flow breaking structures are nested"
Further reading
Method configure has a Cognitive Complexity of 6 (exceeds 5 allowed). Consider refactoring. Open
@Override
protected DataTableSpec[] configure(final DataTableSpec[] inSpecs)
throws InvalidSettingsException {
/*- Read upRead up
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Cognitive Complexity
Cognitive Complexity is a measure of how difficult a unit of code is to intuitively understand. Unlike Cyclomatic Complexity, which determines how difficult your code will be to test, Cognitive Complexity tells you how difficult your code will be to read and comprehend.
A method's cognitive complexity is based on a few simple rules:
- Code is not considered more complex when it uses shorthand that the language provides for collapsing multiple statements into one
- Code is considered more complex for each "break in the linear flow of the code"
- Code is considered more complex when "flow breaking structures are nested"
Further reading
Method readSecondaryTable has a Cognitive Complexity of 6 (exceeds 5 allowed). Consider refactoring. Open
private void readSecondaryTable(BufferedDataTable table) {
readPrimaryTable(table);
KnimeRelationReader reader = new KnimeRelationReader(
SchemaFactory.createM2Schema(), table);- Read upRead up
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Cognitive Complexity
Cognitive Complexity is a measure of how difficult a unit of code is to intuitively understand. Unlike Cyclomatic Complexity, which determines how difficult your code will be to test, Cognitive Complexity tells you how difficult your code will be to read and comprehend.
A method's cognitive complexity is based on a few simple rules:
- Code is not considered more complex when it uses shorthand that the language provides for collapsing multiple statements into one
- Code is considered more complex for each "break in the linear flow of the code"
- Code is considered more complex when "flow breaking structures are nested"
Further reading
Method parse has a Cognitive Complexity of 6 (exceeds 5 allowed). Consider refactoring. Open
private static TwoStepSecondaryModel parse(List<KnimeTuple> tuples, boolean isPMFX, int modelNum, String mdName,
Metadata metadata, String notes) {
/**
* <ol>
* <li>Create n SBMLDocument for primary models</li>- Read upRead up
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Cognitive Complexity
Cognitive Complexity is a measure of how difficult a unit of code is to intuitively understand. Unlike Cyclomatic Complexity, which determines how difficult your code will be to test, Cognitive Complexity tells you how difficult your code will be to read and comprehend.
A method's cognitive complexity is based on a few simple rules:
- Code is not considered more complex when it uses shorthand that the language provides for collapsing multiple statements into one
- Code is considered more complex for each "break in the linear flow of the code"
- Code is considered more complex when "flow breaking structures are nested"
Further reading
Method loadSettingsFrom has a Cognitive Complexity of 6 (exceeds 5 allowed). Consider refactoring. Open
@Override
protected void loadSettingsFrom( final NodeSettingsRO settings, final PortObjectSpec[] specs ) {
try {
/*- Read upRead up
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Cognitive Complexity
Cognitive Complexity is a measure of how difficult a unit of code is to intuitively understand. Unlike Cyclomatic Complexity, which determines how difficult your code will be to test, Cognitive Complexity tells you how difficult your code will be to read and comprehend.
A method's cognitive complexity is based on a few simple rules:
- Code is not considered more complex when it uses shorthand that the language provides for collapsing multiple statements into one
- Code is considered more complex for each "break in the linear flow of the code"
- Code is considered more complex when "flow breaking structures are nested"
Further reading
Method paramXml2Coefficient has a Cognitive Complexity of 6 (exceeds 5 allowed). Consider refactoring. Open
public static PMFCoefficient paramXml2Coefficient(ParamXml paramXml) {
String name = paramXml.name;
double value = (paramXml.value == null) ? 0.0 : paramXml.value;
String unit = (paramXml.unit == null) ? "dimensionless" : PMFUtil.createId(paramXml.unit);
Double P = paramXml.P;- Read upRead up
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Cognitive Complexity
Cognitive Complexity is a measure of how difficult a unit of code is to intuitively understand. Unlike Cyclomatic Complexity, which determines how difficult your code will be to test, Cognitive Complexity tells you how difficult your code will be to read and comprehend.
A method's cognitive complexity is based on a few simple rules:
- Code is not considered more complex when it uses shorthand that the language provides for collapsing multiple statements into one
- Code is considered more complex for each "break in the linear flow of the code"
- Code is considered more complex when "flow breaking structures are nested"
Further reading
Method readPrimaryTable has a Cognitive Complexity of 6 (exceeds 5 allowed). Consider refactoring. Open
private void readPrimaryTable(BufferedDataTable table) {
modelNames = new LinkedHashMap<>();
parameters = new LinkedHashMap<>();
minValues = new LinkedHashMap<>();
maxValues = new LinkedHashMap<>();- Read upRead up
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Cognitive Complexity
Cognitive Complexity is a measure of how difficult a unit of code is to intuitively understand. Unlike Cyclomatic Complexity, which determines how difficult your code will be to test, Cognitive Complexity tells you how difficult your code will be to read and comprehend.
A method's cognitive complexity is based on a few simple rules:
- Code is not considered more complex when it uses shorthand that the language provides for collapsing multiple statements into one
- Code is considered more complex for each "break in the linear flow of the code"
- Code is considered more complex when "flow breaking structures are nested"
Further reading
Method getVisibleCellContent has a Cognitive Complexity of 6 (exceeds 5 allowed). Consider refactoring. Open
public String getVisibleCellContent(final int row, final int col) {
String result = null;
MyTable[] foreignFields = actualTable.getForeignFields();
if (row >= this.getRowCount()) {
return "";- Read upRead up
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Cognitive Complexity
Cognitive Complexity is a measure of how difficult a unit of code is to intuitively understand. Unlike Cyclomatic Complexity, which determines how difficult your code will be to test, Cognitive Complexity tells you how difficult your code will be to read and comprehend.
A method's cognitive complexity is based on a few simple rules:
- Code is not considered more complex when it uses shorthand that the language provides for collapsing multiple statements into one
- Code is considered more complex for each "break in the linear flow of the code"
- Code is considered more complex when "flow breaking structures are nested"
Further reading
Method getSelectedID has a Cognitive Complexity of 6 (exceeds 5 allowed). Consider refactoring. Open
public int getSelectedID() {
int result = -1;
int row = this.getSelectedRow();
if (row >= 0 && this.getRowCount() > 0 && row < this.getRowCount()) {
try {- Read upRead up
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Cognitive Complexity
Cognitive Complexity is a measure of how difficult a unit of code is to intuitively understand. Unlike Cyclomatic Complexity, which determines how difficult your code will be to test, Cognitive Complexity tells you how difficult your code will be to read and comprehend.
A method's cognitive complexity is based on a few simple rules:
- Code is not considered more complex when it uses shorthand that the language provides for collapsing multiple statements into one
- Code is considered more complex for each "break in the linear flow of the code"
- Code is considered more complex when "flow breaking structures are nested"
Further reading
Method getAllFilter has a Cognitive Complexity of 6 (exceeds 5 allowed). Consider refactoring. Open
private int[] getAllFilter(TableModel tm, Vector<Integer> vv) {
if (vv == null) {
int numRows = tm.getRowCount();
int arr[] = new int[numRows];
for (int row = 0; row < numRows; row++) {- Read upRead up
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Cognitive Complexity
Cognitive Complexity is a measure of how difficult a unit of code is to intuitively understand. Unlike Cyclomatic Complexity, which determines how difficult your code will be to test, Cognitive Complexity tells you how difficult your code will be to read and comprehend.
A method's cognitive complexity is based on a few simple rules:
- Code is not considered more complex when it uses shorthand that the language provides for collapsing multiple statements into one
- Code is considered more complex for each "break in the linear flow of the code"
- Code is considered more complex when "flow breaking structures are nested"
Further reading
Method filter has a Cognitive Complexity of 6 (exceeds 5 allowed). Consider refactoring. Open
public int[] filter(TableModel tm) {
int[] result = null;
Vector<Integer> vv = new Vector<>();
try {
if (myTable == null || findString.trim().length() == 0) {- Read upRead up
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Cognitive Complexity
Cognitive Complexity is a measure of how difficult a unit of code is to intuitively understand. Unlike Cyclomatic Complexity, which determines how difficult your code will be to test, Cognitive Complexity tells you how difficult your code will be to read and comprehend.
A method's cognitive complexity is based on a few simple rules:
- Code is not considered more complex when it uses shorthand that the language provides for collapsing multiple statements into one
- Code is considered more complex for each "break in the linear flow of the code"
- Code is considered more complex when "flow breaking structures are nested"
Further reading
Method setLeftComponent has a Cognitive Complexity of 6 (exceeds 5 allowed). Consider refactoring. Open
public void setLeftComponent(MyTable myNewT) {
if (myNewT.isHasForm()) {
//MyDBForm form = new MyDBForm();
myDBForm1.setTable(myNewT);
splitPane2.setLeftComponent(myDBForm1);- Read upRead up
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Cognitive Complexity
Cognitive Complexity is a measure of how difficult a unit of code is to intuitively understand. Unlike Cyclomatic Complexity, which determines how difficult your code will be to test, Cognitive Complexity tells you how difficult your code will be to read and comprehend.
A method's cognitive complexity is based on a few simple rules:
- Code is not considered more complex when it uses shorthand that the language provides for collapsing multiple statements into one
- Code is considered more complex for each "break in the linear flow of the code"
- Code is considered more complex when "flow breaking structures are nested"