SiLeBAT/FSK-Lab

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Method saveSettingsTo has a Cognitive Complexity of 6 (exceeds 5 allowed). Consider refactoring.
Open

    @Override
    public void saveSettingsTo(NodeSettingsWO settings) throws InvalidSettingsException {
        m_modelScript.saveSettingsTo(settings);
        m_paramScript.saveSettingsTo(settings);
        m_visualizationScript.saveSettingsTo(settings);

Cognitive Complexity

Cognitive Complexity is a measure of how difficult a unit of code is to intuitively understand. Unlike Cyclomatic Complexity, which determines how difficult your code will be to test, Cognitive Complexity tells you how difficult your code will be to read and comprehend.

A method's cognitive complexity is based on a few simple rules:

  • Code is not considered more complex when it uses shorthand that the language provides for collapsing multiple statements into one
  • Code is considered more complex for each "break in the linear flow of the code"
  • Code is considered more complex when "flow breaking structures are nested"

Further reading

Method validateSettings has a Cognitive Complexity of 6 (exceeds 5 allowed). Consider refactoring.
Open

    @Override
    protected void validateSettings(NodeSettingsRO settings) throws InvalidSettingsException {
        m_modelScript.validateSettings(settings);
        m_paramScript.validateSettings(settings);
        m_vizScript.validateSettings(settings);

Cognitive Complexity

Cognitive Complexity is a measure of how difficult a unit of code is to intuitively understand. Unlike Cyclomatic Complexity, which determines how difficult your code will be to test, Cognitive Complexity tells you how difficult your code will be to read and comprehend.

A method's cognitive complexity is based on a few simple rules:

  • Code is not considered more complex when it uses shorthand that the language provides for collapsing multiple statements into one
  • Code is considered more complex for each "break in the linear flow of the code"
  • Code is considered more complex when "flow breaking structures are nested"

Further reading

Method saveSettingsTo has a Cognitive Complexity of 6 (exceeds 5 allowed). Consider refactoring.
Open

    @Override
    protected void saveSettingsTo(NodeSettingsWO settings) {
        m_modelScript.saveSettingsTo(settings);
        m_paramScript.saveSettingsTo(settings);
        m_vizScript.saveSettingsTo(settings);

Cognitive Complexity

Cognitive Complexity is a measure of how difficult a unit of code is to intuitively understand. Unlike Cyclomatic Complexity, which determines how difficult your code will be to test, Cognitive Complexity tells you how difficult your code will be to read and comprehend.

A method's cognitive complexity is based on a few simple rules:

  • Code is not considered more complex when it uses shorthand that the language provides for collapsing multiple statements into one
  • Code is considered more complex for each "break in the linear flow of the code"
  • Code is considered more complex when "flow breaking structures are nested"

Further reading

Method loadFromNodeSettings has a Cognitive Complexity of 6 (exceeds 5 allowed). Consider refactoring.
Open

  @Override
  public void loadFromNodeSettings(NodeSettingsRO settings) throws InvalidSettingsException {

    if (settings.containsKey(CFG_MODEL1_PARAMETERS)) {
      try {

Cognitive Complexity

Cognitive Complexity is a measure of how difficult a unit of code is to intuitively understand. Unlike Cyclomatic Complexity, which determines how difficult your code will be to test, Cognitive Complexity tells you how difficult your code will be to read and comprehend.

A method's cognitive complexity is based on a few simple rules:

  • Code is not considered more complex when it uses shorthand that the language provides for collapsing multiple statements into one
  • Code is considered more complex for each "break in the linear flow of the code"
  • Code is considered more complex when "flow breaking structures are nested"

Further reading

Method equals has a Cognitive Complexity of 6 (exceeds 5 allowed). Consider refactoring.
Open

    @Override
    public boolean equals(Object obj) {
      if (this == obj) {
        return true;
      }

Cognitive Complexity

Cognitive Complexity is a measure of how difficult a unit of code is to intuitively understand. Unlike Cyclomatic Complexity, which determines how difficult your code will be to test, Cognitive Complexity tells you how difficult your code will be to read and comprehend.

A method's cognitive complexity is based on a few simple rules:

  • Code is not considered more complex when it uses shorthand that the language provides for collapsing multiple statements into one
  • Code is considered more complex for each "break in the linear flow of the code"
  • Code is considered more complex when "flow breaking structures are nested"

Further reading

Method setScriptBack has a Cognitive Complexity of 6 (exceeds 5 allowed). Consider refactoring.
Open

  private void setScriptBack(FskPortObject fskObject1, FskPortObject fskObject2,
      JsonArray scriptTree) {

    JsonObject obj1 = scriptTree.getJsonObject(0);
    if (obj1.containsKey("script")) {

Cognitive Complexity

Cognitive Complexity is a measure of how difficult a unit of code is to intuitively understand. Unlike Cyclomatic Complexity, which determines how difficult your code will be to test, Cognitive Complexity tells you how difficult your code will be to read and comprehend.

A method's cognitive complexity is based on a few simple rules:

  • Code is not considered more complex when it uses shorthand that the language provides for collapsing multiple statements into one
  • Code is considered more complex for each "break in the linear flow of the code"
  • Code is considered more complex when "flow breaking structures are nested"

Further reading

Method createSedml has a Cognitive Complexity of 6 (exceeds 5 allowed). Consider refactoring.
Open

  private static SEDMLDocument createSedml(FskPortObject portObj) {

    SEDMLDocument doc = Libsedml.createDocument();
    SedML sedml = doc.getSedMLModel();

Cognitive Complexity

Cognitive Complexity is a measure of how difficult a unit of code is to intuitively understand. Unlike Cyclomatic Complexity, which determines how difficult your code will be to test, Cognitive Complexity tells you how difficult your code will be to read and comprehend.

A method's cognitive complexity is based on a few simple rules:

  • Code is not considered more complex when it uses shorthand that the language provides for collapsing multiple statements into one
  • Code is considered more complex for each "break in the linear flow of the code"
  • Code is considered more complex when "flow breaking structures are nested"

Further reading

Method writeCombinedObject has a Cognitive Complexity of 6 (exceeds 5 allowed). Consider refactoring.
Open

  private static void writeCombinedObject(CombinedFskPortObject fskObj, CombineArchive archive,
      Map<String, URI> URIS, String filePrefix) throws Exception {
    filePrefix = filePrefix + normalizeName(fskObj) + System.getProperty("file.separator");
    FskPortObject ffskObj = fskObj.getFirstFskPortObject();
    if (ffskObj instanceof CombinedFskPortObject) {

Cognitive Complexity

Cognitive Complexity is a measure of how difficult a unit of code is to intuitively understand. Unlike Cyclomatic Complexity, which determines how difficult your code will be to test, Cognitive Complexity tells you how difficult your code will be to read and comprehend.

A method's cognitive complexity is based on a few simple rules:

  • Code is not considered more complex when it uses shorthand that the language provides for collapsing multiple statements into one
  • Code is considered more complex for each "break in the linear flow of the code"
  • Code is considered more complex when "flow breaking structures are nested"

Further reading

Method setScriptBack has a Cognitive Complexity of 6 (exceeds 5 allowed). Consider refactoring.
Open

  public void setScriptBack(FskPortObject fskObject1, FskPortObject fskObject2,
      JsonArray scriptTree) {
    JsonObject obj1 = scriptTree.getJsonObject(0);
    if (obj1.containsKey("script")) {
      fskObject1.model = obj1.getString("script");

Cognitive Complexity

Cognitive Complexity is a measure of how difficult a unit of code is to intuitively understand. Unlike Cyclomatic Complexity, which determines how difficult your code will be to test, Cognitive Complexity tells you how difficult your code will be to read and comprehend.

A method's cognitive complexity is based on a few simple rules:

  • Code is not considered more complex when it uses shorthand that the language provides for collapsing multiple statements into one
  • Code is considered more complex for each "break in the linear flow of the code"
  • Code is considered more complex when "flow breaking structures are nested"

Further reading

Method getEnvironment has a Cognitive Complexity of 6 (exceeds 5 allowed). Consider refactoring.
Open

  @Override
  public Optional<Path> getEnvironment() {

    if (environmentPath == null || environmentPath.isEmpty())
      return Optional.empty();

Cognitive Complexity

Cognitive Complexity is a measure of how difficult a unit of code is to intuitively understand. Unlike Cyclomatic Complexity, which determines how difficult your code will be to test, Cognitive Complexity tells you how difficult your code will be to read and comprehend.

A method's cognitive complexity is based on a few simple rules:

  • Code is not considered more complex when it uses shorthand that the language provides for collapsing multiple statements into one
  • Code is considered more complex for each "break in the linear flow of the code"
  • Code is considered more complex when "flow breaking structures are nested"

Further reading

Method equals has a Cognitive Complexity of 6 (exceeds 5 allowed). Consider refactoring.
Open

    @Override
    public boolean equals(Object obj) {
      if (this == obj) {
        return true;
      }

Cognitive Complexity

Cognitive Complexity is a measure of how difficult a unit of code is to intuitively understand. Unlike Cyclomatic Complexity, which determines how difficult your code will be to test, Cognitive Complexity tells you how difficult your code will be to read and comprehend.

A method's cognitive complexity is based on a few simple rules:

  • Code is not considered more complex when it uses shorthand that the language provides for collapsing multiple statements into one
  • Code is considered more complex for each "break in the linear flow of the code"
  • Code is considered more complex when "flow breaking structures are nested"

Further reading

Method createHandler has a Cognitive Complexity of 6 (exceeds 5 allowed). Consider refactoring.
Open

  public static ScriptHandler createHandler(String script_type, List<String> packages) throws Exception {
    
    final ScriptHandler handler;
    
    if (script_type == null) {

Cognitive Complexity

Cognitive Complexity is a measure of how difficult a unit of code is to intuitively understand. Unlike Cyclomatic Complexity, which determines how difficult your code will be to test, Cognitive Complexity tells you how difficult your code will be to read and comprehend.

A method's cognitive complexity is based on a few simple rules:

  • Code is not considered more complex when it uses shorthand that the language provides for collapsing multiple statements into one
  • Code is considered more complex for each "break in the linear flow of the code"
  • Code is considered more complex when "flow breaking structures are nested"

Further reading

Method createHandler has a Cognitive Complexity of 6 (exceeds 5 allowed). Consider refactoring.
Open

  public static ScriptHandler createHandler(String script_type, List<String> packages)
      throws Exception {

    final ScriptHandler handler;

Cognitive Complexity

Cognitive Complexity is a measure of how difficult a unit of code is to intuitively understand. Unlike Cyclomatic Complexity, which determines how difficult your code will be to test, Cognitive Complexity tells you how difficult your code will be to read and comprehend.

A method's cognitive complexity is based on a few simple rules:

  • Code is not considered more complex when it uses shorthand that the language provides for collapsing multiple statements into one
  • Code is considered more complex for each "break in the linear flow of the code"
  • Code is considered more complex when "flow breaking structures are nested"

Further reading

Method execute has a Cognitive Complexity of 6 (exceeds 5 allowed). Consider refactoring.
Open

  @Override
  protected PortObject[] execute(PortObject[] inObjects, ExecutionContext exec) throws Exception {
    exec.setMessage("Creating virtual workflow");
    // Get current node context and workflow
    NodeContext nodeContext = NodeContext.getContext();

Cognitive Complexity

Cognitive Complexity is a measure of how difficult a unit of code is to intuitively understand. Unlike Cyclomatic Complexity, which determines how difficult your code will be to test, Cognitive Complexity tells you how difficult your code will be to read and comprehend.

A method's cognitive complexity is based on a few simple rules:

  • Code is not considered more complex when it uses shorthand that the language provides for collapsing multiple statements into one
  • Code is considered more complex for each "break in the linear flow of the code"
  • Code is considered more complex when "flow breaking structures are nested"

Further reading

Method loadSettingsFrom has a Cognitive Complexity of 6 (exceeds 5 allowed). Consider refactoring.
Open

  @Override
  protected void loadSettingsFrom(NodeSettingsRO settings, PortObjectSpec[] specs)
      throws NotConfigurableException {
    try {
      this.settings.load(settings);

Cognitive Complexity

Cognitive Complexity is a measure of how difficult a unit of code is to intuitively understand. Unlike Cyclomatic Complexity, which determines how difficult your code will be to test, Cognitive Complexity tells you how difficult your code will be to read and comprehend.

A method's cognitive complexity is based on a few simple rules:

  • Code is not considered more complex when it uses shorthand that the language provides for collapsing multiple statements into one
  • Code is considered more complex for each "break in the linear flow of the code"
  • Code is considered more complex when "flow breaking structures are nested"

Further reading

Method lock has a Cognitive Complexity of 6 (exceeds 5 allowed). Consider refactoring.
Open

  public static void lock(File in) {
    try {
      lock.lock();
      
      if(!FSKFilesRegistry.contains(in.getPath())) {

Cognitive Complexity

Cognitive Complexity is a measure of how difficult a unit of code is to intuitively understand. Unlike Cyclomatic Complexity, which determines how difficult your code will be to test, Cognitive Complexity tells you how difficult your code will be to read and comprehend.

A method's cognitive complexity is based on a few simple rules:

  • Code is not considered more complex when it uses shorthand that the language provides for collapsing multiple statements into one
  • Code is considered more complex for each "break in the linear flow of the code"
  • Code is considered more complex when "flow breaking structures are nested"

Further reading

Method isVisScriptEmpty has a Cognitive Complexity of 6 (exceeds 5 allowed). Consider refactoring.
Open

  private boolean isVisScriptEmpty(FskPortObject fskObject) {
    if (fskObject instanceof CombinedFskPortObject) {
      return isVisScriptEmpty(((CombinedFskPortObject)fskObject).getSecondFskPortObject());
    }else {
      if(StringUtils.isBlank(fskObject.getViz())) {

Cognitive Complexity

Cognitive Complexity is a measure of how difficult a unit of code is to intuitively understand. Unlike Cyclomatic Complexity, which determines how difficult your code will be to test, Cognitive Complexity tells you how difficult your code will be to read and comprehend.

A method's cognitive complexity is based on a few simple rules:

  • Code is not considered more complex when it uses shorthand that the language provides for collapsing multiple statements into one
  • Code is considered more complex for each "break in the linear flow of the code"
  • Code is considered more complex when "flow breaking structures are nested"

Further reading

Method equals has a Cognitive Complexity of 6 (exceeds 5 allowed). Consider refactoring.
Open

    @Override
    public boolean equals(Object obj) {
      if (this == obj) {
        return true;
      }

Cognitive Complexity

Cognitive Complexity is a measure of how difficult a unit of code is to intuitively understand. Unlike Cyclomatic Complexity, which determines how difficult your code will be to test, Cognitive Complexity tells you how difficult your code will be to read and comprehend.

A method's cognitive complexity is based on a few simple rules:

  • Code is not considered more complex when it uses shorthand that the language provides for collapsing multiple statements into one
  • Code is considered more complex for each "break in the linear flow of the code"
  • Code is considered more complex when "flow breaking structures are nested"

Further reading

Method convertJSONTableToBufferedDataTable has a Cognitive Complexity of 6 (exceeds 5 allowed). Consider refactoring.
Open

  private BufferedDataTable convertJSONTableToBufferedDataTable(final ExecutionContext exec) {

    String[] colNames = new String[] {"JSON", "Selected (Table View)"};
    DataType[] colTypes = new DataType[] {StringCell.TYPE, BooleanCell.TYPE};
    DataTableSpec spec = new DataTableSpec(colNames, colTypes);

Cognitive Complexity

Cognitive Complexity is a measure of how difficult a unit of code is to intuitively understand. Unlike Cyclomatic Complexity, which determines how difficult your code will be to test, Cognitive Complexity tells you how difficult your code will be to read and comprehend.

A method's cognitive complexity is based on a few simple rules:

  • Code is not considered more complex when it uses shorthand that the language provides for collapsing multiple statements into one
  • Code is considered more complex for each "break in the linear flow of the code"
  • Code is considered more complex when "flow breaking structures are nested"

Further reading

Method execute has a Cognitive Complexity of 6 (exceeds 5 allowed). Consider refactoring.
Open

  @Override
  protected PortObject[] execute(PortObject[] inObjects, ExecutionContext exec) throws Exception {
    exec.setMessage("Creating virtual workflow");
    // Get current node context and workflow
    NodeContext nodeContext = NodeContext.getContext();

Cognitive Complexity

Cognitive Complexity is a measure of how difficult a unit of code is to intuitively understand. Unlike Cyclomatic Complexity, which determines how difficult your code will be to test, Cognitive Complexity tells you how difficult your code will be to read and comprehend.

A method's cognitive complexity is based on a few simple rules:

  • Code is not considered more complex when it uses shorthand that the language provides for collapsing multiple statements into one
  • Code is considered more complex for each "break in the linear flow of the code"
  • Code is considered more complex when "flow breaking structures are nested"

Further reading

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