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Showing 6,856 of 14,752 total issues

Method parse has 92 lines of code (exceeds 25 allowed). Consider refactoring.
Open

        private static TwoStepTertiaryModel parse(List<List<KnimeTuple>> tupleList, boolean isPMFX, int modelNum,
                String mdName, Metadata metadata, String notes) {

            final String modelExtension = isPMFX ? "pmf" : "sbml";
Severity: Major
Found in de.bund.bfr.knime.pmm.nodes/src/de/bund/bfr/knime/pmm/common/writer/WriterUtils.java - About 3 hrs to fix

Method createSbmlDocument has 92 lines of code (exceeds 25 allowed). Consider refactoring.
Open

  private static SBMLDocument createSbmlDocument(final FskMetaData template) {

    // Creates SBMLDocument for the primary model
    final SBMLDocument sbmlDocument = new SBMLDocument(TableReader.LEVEL, TableReader.VERSION);
Severity: Major
Found in de.bund.bfr.knime.fsklab.deprecatednodes/src-prerakip/de/bund/bfr/knime/pmm/fskx/writer/FskxWriterNodeModel.java - About 3 hrs to fix

Method performExecute has 92 lines of code (exceeds 25 allowed). Consider refactoring.
Open

  @Override
  protected PortObject[] performExecute(PortObject[] inObjects, ExecutionContext exec)
      throws Exception {

    MAPPER.enable(DeserializationFeature.ACCEPT_EMPTY_STRING_AS_NULL_OBJECT);
Severity: Major
Found in de.bund.bfr.knime.fsklab.deprecatednodes/src-1_7_2/de/bund/bfr/knime/fsklab/nodes/v1_7_2/joiner/JoinerNodeModel.java - About 3 hrs to fix

SettingsHelper has 30 methods (exceeds 20 allowed). Consider refactoring.
Open

public class SettingsHelper {

    private static final String CFGKEY_FILENAME = "FileName";
    private static final String CFGKEY_SHEETNAME = "SheetName";
    private static final String CFG_PRESERVE_IDS = "PreserveIds";
Severity: Minor
Found in de.bund.bfr.knime.pmm.nodes/src/de/bund/bfr/knime/pmm/xlstimeseriesreader/SettingsHelper.java - About 3 hrs to fix

ChartSelectionPanel has 30 methods (exceeds 20 allowed). Consider refactoring.
Open

public class ChartSelectionPanel extends JPanel implements ActionListener,
        CellEditorListener, ListSelectionListener {

    private static final String ID = "ID";
    private static final String SELECTED = "Selected";
Severity: Minor
Found in de.bund.bfr.knime.pmm.common/src/de/bund/bfr/knime/pmm/common/chart/ChartSelectionPanel.java - About 3 hrs to fix

KnimeTuple has 30 methods (exceeds 20 allowed). Consider refactoring.
Open

public class KnimeTuple implements DataRow {

    private KnimeSchema schema;
    private DataCell[] cell;
Severity: Minor
Found in de.bund.bfr.knime.pmm.common/src/de/bund/bfr/knime/pmm/common/generictablemodel/KnimeTuple.java - About 3 hrs to fix

Method loadSettings has 91 lines of code (exceeds 25 allowed). Consider refactoring.
Open

    public void loadSettings(NodeSettingsRO settings) {
        try {
            selectedIDs = XmlConverter.xmlToObject(
                    settings.getString(CFG_SELECTEDIDS),
                    new ArrayList<String>());
Severity: Major
Found in de.bund.bfr.knime.pmm.nodes/src/de/bund/bfr/knime/pmm/dataviewandselect/SettingsHelper.java - About 3 hrs to fix

Method deleteFMID has 91 lines of code (exceeds 25 allowed). Consider refactoring.
Open

    private int deleteFMID(Connection conn, int level, Object rowEstMID) {
        int numDBSuccesses = 0;
        Integer firstCLID = DBKernel.getMaxID("ChangeLog");
        if (firstCLID == null)
            firstCLID = 0;
Severity: Major
Found in de.bund.bfr.knime.pmm.nodes/src/de/bund/bfr/knime/pmm/dbdelete/DatabaseDeleteNodeModel.java - About 3 hrs to fix

Method plotFunctionSample has 91 lines of code (exceeds 25 allowed). Consider refactoring.
Open

    private void plotFunctionSample(XYPlot plot, Plotable plotable, String id,
            Color defaultColor, Shape defaultShape, double minX, double maxX,
            List<String> warnings) throws ConvertException {
        double[][] functionPoints = plotable.getFunctionPoints(paramX, paramY,
                unitX, unitY, transformX, transformY, minX, maxX,
Severity: Major
Found in de.bund.bfr.knime.pmm.common/src/de/bund/bfr/knime/pmm/common/chart/ChartCreator.java - About 3 hrs to fix

Function tokenBase has 91 lines of code (exceeds 25 allowed). Consider refactoring.
Open

  function tokenBase(stream, state) {
    var ch = stream.next(),
        mightBeFunction = false,
        isEQName = isEQNameAhead(stream);
Severity: Major
Found in de.bund.bfr.knime.js/js-lib/codemirror-5.49.2/mode/xquery/xquery.js - About 3 hrs to fix

File FittedParameterViewNodeDialog.java has 318 lines of code (exceeds 250 allowed). Consider refactoring.
Open

/*******************************************************************************
 * Copyright (c) 2015 Federal Institute for Risk Assessment (BfR), Germany
 *
 * This program is free software: you can redistribute it and/or modify
 * it under the terms of the GNU General Public License as published by
Severity: Minor
Found in de.bund.bfr.knime.pmm.nodes/src/de/bund/bfr/knime/pmm/fittedparameterview/FittedParameterViewNodeDialog.java - About 3 hrs to fix

File FSKEditorJSNodeDialog.java has 318 lines of code (exceeds 250 allowed). Consider refactoring.
Open

/*
 ***************************************************************************************************
 * Copyright (c) 2017 Federal Institute for Risk Assessment (BfR), Germany
 *
 * This program is free software: you can redistribute it and/or modify it under the terms of the
Severity: Minor
Found in de.bund.bfr.knime.fsklab.deprecatednodes/src-1_9_0/de/bund/bfr/knime/fsklab/v1_9/editor/FSKEditorJSNodeDialog.java - About 3 hrs to fix

Method loadSettings has 90 lines of code (exceeds 25 allowed). Consider refactoring.
Open

    public void loadSettings(NodeSettingsRO settings) {
        try {
            addedConditions = XmlConverter.xmlToObject(
                    settings.getString(CFGKEY_ADDEDCONDITIONS),
                    new LinkedHashMap<Integer, MiscXml>());
Severity: Major
Found in de.bund.bfr.knime.pmm.nodes/src/de/bund/bfr/knime/pmm/microbialdataedit/SettingsHelper.java - About 3 hrs to fix

Method mouseClicked has 90 lines of code (exceeds 25 allowed). Consider refactoring.
Open

    @Override
    public void mouseClicked(MouseEvent e) {
        if (e.getButton() == MouseEvent.BUTTON3 && e.getSource() == table.getTableHeader()) {
            int index = table.convertColumnIndexToModel(table.columnAtPoint(e.getPoint()));
            String column = table.getModel().getColumnName(index);
Severity: Major
Found in de.bund.bfr.knime.pmm.nodes/src/de/bund/bfr/knime/pmm/microbialdataedit/MicrobialDataEditNodeDialog.java - About 3 hrs to fix

Method doLieferkettenTabellen has 90 lines of code (exceeds 25 allowed). Consider refactoring.
Open

    @SuppressWarnings("unchecked")
    private void doLieferkettenTabellen(final MyTable agenzien, final MyTable matrix, final LinkedHashMap<Object, String> h4) {
        LinkedHashMap<Boolean, String> hYNB = new LinkedHashMap<>();
        if (DBKernel.getLanguage().equalsIgnoreCase("en")) {hYNB.put(new Boolean(true), "yes");    hYNB.put(new Boolean(false), "no");}
        else {hYNB.put(new Boolean(true), "ja");    hYNB.put(new Boolean(false), "nein");}
Severity: Major
Found in org.hsh.bfr.db/src/org/hsh/bfr/db/MyDBTablesNew.java - About 3 hrs to fix

Method setDateAndMode has 90 lines of code (exceeds 25 allowed). Consider refactoring.
Open

    public void setDateAndMode(final Date date, final Mode mode) {

        GregorianCalendar cal = new GregorianCalendar(TimeZone.getTimeZone("UTC"));
        cal.setTime(date);
Severity: Major
Found in de.bund.bfr.knime.pmm.common/src/de/bund/bfr/knime/pmm/common/ui/DateInputDialog.java - About 3 hrs to fix

Function tokenBase has 90 lines of code (exceeds 25 allowed). Consider refactoring.
Open

  function tokenBase(stream, state) {
    if (stream.sol() && stream.match("=begin") && stream.eol()) {
      state.tokenize.push(readBlockComment);
      return "comment";
    }
Severity: Major
Found in de.bund.bfr.knime.js/js-lib/codemirror-5.49.2/mode/ruby/ruby.js - About 3 hrs to fix

Function bind has 90 lines of code (exceeds 25 allowed). Consider refactoring.
Open

  Search.prototype.bind = function (decorated, container, $container) {
    var self = this;

    var resultsId = container.id + '-results';
    var selectionId = container.id + '-container';
Severity: Major
Found in de.bund.bfr.knime.js/src/js/lib/select2.full.js - About 3 hrs to fix

Function insert_formula has 90 lines of code (exceeds 25 allowed). Consider refactoring.
Open

    function insert_formula(modelNumber) {

        function load_category_combo(selected_category) {
            var MODEL_CLASSES = ["unknown", "growth", "inactivation", "survival",
                "growth/inactivation", "inactivation/survival", "growth/survival",
Severity: Major
Found in de.bund.bfr.knime.pmm.nodes/js-src/de/bund/bfr/knime/pmm/editor/editor.js - About 3 hrs to fix

Function VariableRow has 90 lines of code (exceeds 25 allowed). Consider refactoring.
Open

        function VariableRow(variable, is_dependent) {
            VariableRowBase.call(this);

            // HTML elements
            this.isDependentInput = new Input('checkbox');
Severity: Major
Found in de.bund.bfr.knime.fsklab.deprecatednodes/js-src/de/bund/bfr/knime/fsklab/nodes/metadataeditor/editor.js - About 3 hrs to fix
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