SiLeBAT/FSK-Lab

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Function _open has 57 lines of code (exceeds 25 allowed). Consider refactoring.
Open

    _open: function( event, target, content ) {
        var tooltipData, tooltip, delayedShow, a11yContent,
            positionOption = $.extend( {}, this.options.position );

        if ( !content ) {

Function NewVariableRow has 57 lines of code (exceeds 25 allowed). Consider refactoring.
Open

        function NewVariableRow() {
            VariableRowBase.call(this);

            // HTML elements
            this.isDependentInput = $('td:eq(6)', this.row).append(

Function fixValueIssue has 57 lines of code (exceeds 25 allowed). Consider refactoring.
Open

    function fixValueIssue(){
        $.each(window.parentStores,function(storeindex,container){
            currentStore = container[0]
            $.each(Object.keys(currentStore.getState().jsonforms.core.data),function (index, theValue){
                if(typeof currentStore.getState().jsonforms.core.data[theValue] === "object"){

Function 7 has 57 lines of code (exceeds 25 allowed). Consider refactoring.
Open

},{"./schema_obj":8,"./util":10,"fast-deep-equal":41,"json-schema-traverse":43,"uri-js":44}],7:[function(require,module,exports){
'use strict';

var ruleModules = require('../dotjs')
  , toHash = require('./util').toHash;

File ModelPlotterNodeModel.java has 261 lines of code (exceeds 250 allowed). Consider refactoring.
Open

/*******************************************************************************
 * Copyright (c) 2015 Federal Institute for Risk Assessment (BfR), Germany
 *
 * This program is free software: you can redistribute it and/or modify
 * it under the terms of the GNU General Public License as published by

Method equals has a Cognitive Complexity of 17 (exceeds 5 allowed). Consider refactoring.
Open

  @Override
  public boolean equals(Object obj) {
    if (this == obj)
      return true;
    if (obj == null || getClass() != obj.getClass())

Cognitive Complexity

Cognitive Complexity is a measure of how difficult a unit of code is to intuitively understand. Unlike Cyclomatic Complexity, which determines how difficult your code will be to test, Cognitive Complexity tells you how difficult your code will be to read and comprehend.

A method's cognitive complexity is based on a few simple rules:

  • Code is not considered more complex when it uses shorthand that the language provides for collapsing multiple statements into one
  • Code is considered more complex for each "break in the linear flow of the code"
  • Code is considered more complex when "flow breaking structures are nested"

Further reading

Method equals has a Cognitive Complexity of 17 (exceeds 5 allowed). Consider refactoring.
Open

  @Override
  public boolean equals(java.lang.Object o) {
    if (this == o) {
      return true;
    }

Cognitive Complexity

Cognitive Complexity is a measure of how difficult a unit of code is to intuitively understand. Unlike Cyclomatic Complexity, which determines how difficult your code will be to test, Cognitive Complexity tells you how difficult your code will be to read and comprehend.

A method's cognitive complexity is based on a few simple rules:

  • Code is not considered more complex when it uses shorthand that the language provides for collapsing multiple statements into one
  • Code is considered more complex for each "break in the linear flow of the code"
  • Code is considered more complex when "flow breaking structures are nested"

Further reading

Method equals has a Cognitive Complexity of 17 (exceeds 5 allowed). Consider refactoring.
Open

  @Override
  public boolean equals(java.lang.Object o) {
    if (this == o) {
      return true;
    }

Cognitive Complexity

Cognitive Complexity is a measure of how difficult a unit of code is to intuitively understand. Unlike Cyclomatic Complexity, which determines how difficult your code will be to test, Cognitive Complexity tells you how difficult your code will be to read and comprehend.

A method's cognitive complexity is based on a few simple rules:

  • Code is not considered more complex when it uses shorthand that the language provides for collapsing multiple statements into one
  • Code is considered more complex for each "break in the linear flow of the code"
  • Code is considered more complex when "flow breaking structures are nested"

Further reading

Method checkSec has a Cognitive Complexity of 17 (exceeds 5 allowed). Consider refactoring.
Open

    private void checkSec(HashMap<ParametricModel, HashMap<String, ParametricModel>> m_secondaryModels, int id, HashMap<String, Object[]> hm) {
        boolean idFound = false;
        for (HashMap<String, ParametricModel> sm : m_secondaryModels.values()) {
            for (ParametricModel pm : sm.values()) {
                if (pm.estModelId == id) {

Cognitive Complexity

Cognitive Complexity is a measure of how difficult a unit of code is to intuitively understand. Unlike Cyclomatic Complexity, which determines how difficult your code will be to test, Cognitive Complexity tells you how difficult your code will be to read and comprehend.

A method's cognitive complexity is based on a few simple rules:

  • Code is not considered more complex when it uses shorthand that the language provides for collapsing multiple statements into one
  • Code is considered more complex for each "break in the linear flow of the code"
  • Code is considered more complex when "flow breaking structures are nested"

Further reading

Method createUnitFromDB has a Cognitive Complexity of 17 (exceeds 5 allowed). Consider refactoring.
Open

    public static PMFUnitDefinition createUnitFromDB(String unit) throws XMLStreamException {
        if (!DBUnits.getDBUnits().containsKey(unit)) {
            return null;
        }

Cognitive Complexity

Cognitive Complexity is a measure of how difficult a unit of code is to intuitively understand. Unlike Cyclomatic Complexity, which determines how difficult your code will be to test, Cognitive Complexity tells you how difficult your code will be to read and comprehend.

A method's cognitive complexity is based on a few simple rules:

  • Code is not considered more complex when it uses shorthand that the language provides for collapsing multiple statements into one
  • Code is considered more complex for each "break in the linear flow of the code"
  • Code is considered more complex when "flow breaking structures are nested"

Further reading

Method execute has a Cognitive Complexity of 17 (exceeds 5 allowed). Consider refactoring.
Open

    @Override
    protected PortObject[] execute(PortObject[] inObjects, ExecutionContext exec)
            throws Exception {
        DataTable table = (DataTable) inObjects[0];
        TableReader reader = new TableReader(table, set.getUsedConditions());

Cognitive Complexity

Cognitive Complexity is a measure of how difficult a unit of code is to intuitively understand. Unlike Cyclomatic Complexity, which determines how difficult your code will be to test, Cognitive Complexity tells you how difficult your code will be to read and comprehend.

A method's cognitive complexity is based on a few simple rules:

  • Code is not considered more complex when it uses shorthand that the language provides for collapsing multiple statements into one
  • Code is considered more complex for each "break in the linear flow of the code"
  • Code is considered more complex when "flow breaking structures are nested"

Further reading

Method parse has a Cognitive Complexity of 17 (exceeds 5 allowed). Consider refactoring.
Open

        private static TwoStepTertiaryModel parse(List<List<KnimeTuple>> tupleList, boolean isPMFX, int modelNum,
                String mdName, Metadata metadata, String notes) {

            final String modelExtension = isPMFX ? "pmf" : "sbml";

Cognitive Complexity

Cognitive Complexity is a measure of how difficult a unit of code is to intuitively understand. Unlike Cyclomatic Complexity, which determines how difficult your code will be to test, Cognitive Complexity tells you how difficult your code will be to read and comprehend.

A method's cognitive complexity is based on a few simple rules:

  • Code is not considered more complex when it uses shorthand that the language provides for collapsing multiple statements into one
  • Code is considered more complex for each "break in the linear flow of the code"
  • Code is considered more complex when "flow breaking structures are nested"

Further reading

Method parse has a Cognitive Complexity of 17 (exceeds 5 allowed). Consider refactoring.
Open

        private static ManualSecondaryModel parse(KnimeTuple tuple, boolean isPMFX, String mdName, int mdNum,
                Metadata metadata, String notes) {

            final String modelExtension = isPMFX ? "pmf" : "sbml";

Cognitive Complexity

Cognitive Complexity is a measure of how difficult a unit of code is to intuitively understand. Unlike Cyclomatic Complexity, which determines how difficult your code will be to test, Cognitive Complexity tells you how difficult your code will be to read and comprehend.

A method's cognitive complexity is based on a few simple rules:

  • Code is not considered more complex when it uses shorthand that the language provides for collapsing multiple statements into one
  • Code is considered more complex for each "break in the linear flow of the code"
  • Code is considered more complex when "flow breaking structures are nested"

Further reading

Method getKnimeTuples has 18 arguments (exceeds 4 allowed). Consider refactoring.
Open

    public static List<KnimeTuple> getKnimeTuples(Bfrdb db, Connection conn, KnimeSchema schema,
            int level, boolean withoutMdData, int qualityMode, double qualityThresh,
            String matrixString, String agentString, String literatureString, int matrixID, int agentID, int literatureID, LinkedHashMap<String, Double[]> parameter,
            boolean modelFilterEnabled, int[] modelList, String where, EstimatedModelReaderNodeModel emrnm) throws SQLException {

Method loadEstModelGui has a Cognitive Complexity of 17 (exceeds 5 allowed). Consider refactoring.
Open

    private void loadEstModelGui(final NodeSettingsRO settings) throws InvalidSettingsException {
        try {
            Config c = settings.getConfig("EstModelReaderUi");
            estModelReaderUiSettings = c;

Cognitive Complexity

Cognitive Complexity is a measure of how difficult a unit of code is to intuitively understand. Unlike Cyclomatic Complexity, which determines how difficult your code will be to test, Cognitive Complexity tells you how difficult your code will be to read and comprehend.

A method's cognitive complexity is based on a few simple rules:

  • Code is not considered more complex when it uses shorthand that the language provides for collapsing multiple statements into one
  • Code is considered more complex for each "break in the linear flow of the code"
  • Code is considered more complex when "flow breaking structures are nested"

Further reading

Method actionPerformed has a Cognitive Complexity of 17 (exceeds 5 allowed). Consider refactoring.
Open

    @Override
    public void actionPerformed(ActionEvent e) {
        if (e.getSource() == okButton) {
            DoNotUseToNull(mappings);
            DoNotUseToNull(paramErrors);

Cognitive Complexity

Cognitive Complexity is a measure of how difficult a unit of code is to intuitively understand. Unlike Cyclomatic Complexity, which determines how difficult your code will be to test, Cognitive Complexity tells you how difficult your code will be to read and comprehend.

A method's cognitive complexity is based on a few simple rules:

  • Code is not considered more complex when it uses shorthand that the language provides for collapsing multiple statements into one
  • Code is considered more complex for each "break in the linear flow of the code"
  • Code is considered more complex when "flow breaking structures are nested"

Further reading

Method askVeraltetDBBackup has a Cognitive Complexity of 17 (exceeds 5 allowed). Consider refactoring.
Open

    private int askVeraltetDBBackup(MyDBI myDBi) {
        int result = JOptionPane.YES_OPTION;
        int retVal = JOptionPane.showConfirmDialog(this, "Die Datenbank ist veraltet und muss ersetzt werden.\nSoll zuvor ein Backup der alten Datenbank erstellt werden?",
                "Backup erstellen?", JOptionPane.YES_NO_CANCEL_OPTION, JOptionPane.QUESTION_MESSAGE);
        if (retVal == JOptionPane.YES_OPTION) {
Severity: Minor
Found in org.hsh.bfr.db/src/org/hsh/bfr/db/gui/Login.java - About 2 hrs to fix

Cognitive Complexity

Cognitive Complexity is a measure of how difficult a unit of code is to intuitively understand. Unlike Cyclomatic Complexity, which determines how difficult your code will be to test, Cognitive Complexity tells you how difficult your code will be to read and comprehend.

A method's cognitive complexity is based on a few simple rules:

  • Code is not considered more complex when it uses shorthand that the language provides for collapsing multiple statements into one
  • Code is considered more complex for each "break in the linear flow of the code"
  • Code is considered more complex when "flow breaking structures are nested"

Further reading

Method execute has a Cognitive Complexity of 17 (exceeds 5 allowed). Consider refactoring.
Open

    @Override
    protected BufferedDataTable[] execute(final BufferedDataTable[] inData, final ExecutionContext exec)
            throws Exception {
        KnimeTuple modelTuple = new KnimeTuple(set.getModelTuple().getSchema(),
                set.getModelTuple().getSchema().createSpec(), set.getModelTuple());

Cognitive Complexity

Cognitive Complexity is a measure of how difficult a unit of code is to intuitively understand. Unlike Cyclomatic Complexity, which determines how difficult your code will be to test, Cognitive Complexity tells you how difficult your code will be to read and comprehend.

A method's cognitive complexity is based on a few simple rules:

  • Code is not considered more complex when it uses shorthand that the language provides for collapsing multiple statements into one
  • Code is considered more complex for each "break in the linear flow of the code"
  • Code is considered more complex when "flow breaking structures are nested"

Further reading

Method insertNull has a Cognitive Complexity of 17 (exceeds 5 allowed). Consider refactoring.
Open

    void insertNull(final int selRow, final int selCol) {
        if (!this.actualTable.isReadOnly() && selCol > 0 && selRow >= 0 && this.getRowCount() > 0) {
        String[] mnTable = actualTable.getMNTable();
        MyTable[] myFs = actualTable.getForeignFields();
            if (mnTable != null && mnTable.length > selCol - 1 && mnTable[selCol - 1] != null) {
Severity: Minor
Found in org.hsh.bfr.db/src/org/hsh/bfr/db/gui/dbtable/MyDBTable.java - About 2 hrs to fix

Cognitive Complexity

Cognitive Complexity is a measure of how difficult a unit of code is to intuitively understand. Unlike Cyclomatic Complexity, which determines how difficult your code will be to test, Cognitive Complexity tells you how difficult your code will be to read and comprehend.

A method's cognitive complexity is based on a few simple rules:

  • Code is not considered more complex when it uses shorthand that the language provides for collapsing multiple statements into one
  • Code is considered more complex for each "break in the linear flow of the code"
  • Code is considered more complex when "flow breaking structures are nested"

Further reading

Method startTheDB has a Cognitive Complexity of 17 (exceeds 5 allowed). Consider refactoring.
Open

    private void startTheDB(Boolean autoUpdate, boolean openTheGui) {
        MainFrame mf = null;
        DBKernel.myDBi = MyDBI.loadDB(textField2.getText() + System.getProperty("file.separator") + DBKernel.dbKennung + ".xml");
        if (DBKernel.myDBi != null) {
            DBKernel.HSHDB_PATH = textField2.getText();
Severity: Minor
Found in org.hsh.bfr.db/src/org/hsh/bfr/db/gui/Login.java - About 2 hrs to fix

Cognitive Complexity

Cognitive Complexity is a measure of how difficult a unit of code is to intuitively understand. Unlike Cyclomatic Complexity, which determines how difficult your code will be to test, Cognitive Complexity tells you how difficult your code will be to read and comprehend.

A method's cognitive complexity is based on a few simple rules:

  • Code is not considered more complex when it uses shorthand that the language provides for collapsing multiple statements into one
  • Code is considered more complex for each "break in the linear flow of the code"
  • Code is considered more complex when "flow breaking structures are nested"

Further reading

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