Class Filter has 64 methods (exceeds 20 allowed). Consider refactoring.

Open

    class Filter < Query::Filter
      include Queries::Concerns::Notes
      include Queries::Concerns::Tags
      include Queries::Concerns::Citations
      include Queries::Concerns::Depictions

Method has too many lines. [90/25]

Open

  def self.generate(otu, project_members, reference_csv = nil)
     name_total = 0
    ::CSV.generate(col_sep: "\t") do |csv|
      csv << %w{
        ID

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File geo.rb has 533 lines of code (exceeds 250 allowed). Consider refactoring.

Open

module Utilities
  # Special general routines for Geo-specific itams
  module Geo

    # !!

Class TaxonNameRelationship has 60 methods (exceeds 20 allowed). Consider refactoring.

Open

class TaxonNameRelationship < ApplicationRecord
  include Housekeeping
  include Shared::Citations
  include Shared::Notes
  include Shared::IsData

Method has too many lines. [85/25]

Open

    def model_graph(model, label: false)
      m = model
      k = node_klass(m.name)

      g = GraphViz.new(

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File taxon_name_relationship.rb has 504 lines of code (exceeds 250 allowed). Consider refactoring.

Open

require_dependency Rails.root.to_s + '/app/models/taxon_name_classification.rb'

# A NOMEN https://github.com/SpeciesFileGroup/nomen relationship between two Protonyms.
#
# Unless otherwise noted relationships read left to right, and can be interpreted by inserting "of" after the class name.

File data.rb has 473 lines of code (exceeds 250 allowed). Consider refactoring.

Open

require 'zip'

module Export::Dwca

  # !!

Method has too many lines. [73/25]

Open

  def set_cached_names_for_taxon_names
    begin
      TaxonName.transaction_with_retry do
        t = taxon_name

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Function useFieldSync has a Cognitive Complexity of 47 (exceeds 5 allowed). Consider refactoring.

Open

export function useFieldSync() {
  const attributes = ref([])
  const dataAttributes = ref([])
  const from = ref()
  const isLoading = ref(false)

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Method extract_dates has 180 lines of code (exceeds 25 allowed). Consider refactoring.

Open

  def self.extract_dates(trial, match_data)
    end_date_year, end_date_month, end_date_day = 0, 0, 0
    case trial[:method].downcase.to_sym
      when :month_dd_yyyy_2
        start_date_year = 3

Method has too many lines. [72/25]

Open

  def nexml_descriptors(options = {})
    opt = {target: ''}.merge!(options)
    xml = Builder::XmlMarkup.new(target: opt[:target])
    m = opt[:observation_matrix]
    # Multistate characters

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Method has too many lines. [72/25]

Open

    def build_da_for_otus
      @total_data_lines = 0
      i = 0
      import_klass = type_select.start_with?('im')
      att_klass = (type_select.capitalize + 'Attribute').safe_constantize

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Method nexml_otus has a Cognitive Complexity of 46 (exceeds 5 allowed). Consider refactoring.

Open

  def nexml_otus(options = {})
    opt = {target: ''}.merge!(options)
    xml = Builder::XmlMarkup.new(target: opt[:target])
    m = opt[:observation_matrix]

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Method coordinates_regex_from_verbatim_label has a Cognitive Complexity of 44 (exceeds 5 allowed). Consider refactoring.

Open

    def self.coordinates_regex_from_verbatim_label(text)
      return nil if text.blank?
      text = text.gsub("''", '"')
        .gsub('´´', '"')
        .gsub('ʹʹ', '"')

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Method useful_descriptors has 168 lines of code (exceeds 25 allowed). Consider refactoring.

Open

  def useful_descriptors
    list_of_remaining_taxa = {}
    language = language_id.blank? ? nil : language_id.to_i
    row_hash.each do |r_key, r_value|
      if r_value[:status] != 'eliminated'

Method has too many lines. [68/25]

Open

  def nexml_otus(options = {})
    opt = {target: ''}.merge!(options)
    xml = Builder::XmlMarkup.new(target: opt[:target])
    m = opt[:observation_matrix]

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Method has too many lines. [68/25]

Open

  def remaining_taxa
    h = {}
    language = language_id.blank? ? nil : language_id.to_i

    row_hash.each do |r_key, r_value|

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File dwc_extensions.rb has 445 lines of code (exceeds 250 allowed). Consider refactoring.

Open

module CollectionObject::DwcExtensions

  extend ActiveSupport::Concern

  include CollectionObject::DwcExtensions::TaxonworksExtensions

Class CollectionObjectsController has 48 methods (exceeds 20 allowed). Consider refactoring.

Open

class CollectionObjectsController < ApplicationController
  include DataControllerConfiguration::ProjectDataControllerConfiguration

  before_action :set_collection_object, only: [
    :show, :edit, :update, :destroy, :navigation, :containerize,

Method date_regex_from_verbatim_label has a Cognitive Complexity of 43 (exceeds 5 allowed). Consider refactoring.

Open

  def self.date_regex_from_verbatim_label(text)
    return nil if text.blank?
    text = ' ' + text.downcase.squish + ' '

    date = {}

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