File csl_styles.rb has 2014 lines of code (exceeds 250 allowed). Consider refactoring.

Open

CSL_STYLES = {
"http://www.zotero.org/styles/vancouver-brackets-only-year-no-issue" => "Vancouver (brackets, only year in date, no issue numbers)",
"http://www.zotero.org/styles/orthopedic-clinics-of-north-america" => "Orthopedic Clinics of North America",
"http://www.zotero.org/styles/asa-cssa-sssa" => "American Society of Agronomy, Crop Science Society of America, Soil Science Society of America",
"http://www.zotero.org/styles/acta-orthopaedica-belgica" => "Acta Orthopædica Belgica",

Method useful_descriptors has a Cognitive Complexity of 207 (exceeds 5 allowed). Consider refactoring.

Open

  def useful_descriptors
    list_of_remaining_taxa = {}
    language = @language_id.blank? ? nil : @language_id.to_i
    @row_hash.each do |r_key, r_value|
      if r_value[:status] != 'eliminated'

• Read up
  Read up

Method merge_with has a Cognitive Complexity of 153 (exceeds 5 allowed). Consider refactoring.

Open

  def merge_with(person_id)
    return false if person_id == id
    if r_person = Person.find(person_id) # get the person to merge to this person
      begin
        ApplicationRecord.transaction do

• Read up
  Read up

File taxon_name.rb has 1014 lines of code (exceeds 250 allowed). Consider refactoring.

Open

require_dependency Rails.root.to_s + '/app/models/taxon_name_classification.rb'
require_dependency Rails.root.to_s + '/app/models/taxon_name_relationship.rb'

# A taxonomic name (nomenclature only). See also NOMEN.
#

Class TaxonName has 127 methods (exceeds 20 allowed). Consider refactoring.

Open

class TaxonName < ApplicationRecord

  # @return class
  #   this method calls Module#module_parent
  # TODO: This method can be placed elsewhere inside this class (or even removed if not used)

File soft_validation_extensions.rb has 981 lines of code (exceeds 250 allowed). Consider refactoring.

Open

module Protonym::SoftValidationExtensions

  module Klass

    VALIDATIONS = {

Method build_dwca has a Cognitive Complexity of 113 (exceeds 5 allowed). Consider refactoring.

Open

    def build_dwca
      line_counter = 1 # accounting for headers

      tasks = triage(csv.headers, tasks_)
      csv.each do |row|

• Read up
  Read up

File geographic_item.rb has 768 lines of code (exceeds 250 allowed). Consider refactoring.

Open

require 'rgeo'

# A GeographicItem is one and only one of [point, line_string, polygon, multi_point, multi_line_string,
# multi_polygon, geometry_collection] which describes a position, path, or area on the globe, generally associated
# with a geographic_area (through a geographic_area_geographic_item entry), and sometimes only with a georeference.

File dates.rb has 761 lines of code (exceeds 250 allowed). Consider refactoring.

Open

module Utilities::Dates

  EARLIEST_DATE = '1700/01/10'.freeze # Reconcile with in-app

  LONG_MONTHS = %w{january february march april may june july august september october november december}.freeze

Class GeographicItem has 90 methods (exceeds 20 allowed). Consider refactoring.

Open

class GeographicItem < ApplicationRecord
  include Housekeeping::Users
  include Housekeeping::Timestamps
  include Shared::IsData
  include Shared::SharedAcrossProjects

Method sv_potential_species_homonyms has a Cognitive Complexity of 84 (exceeds 5 allowed). Consider refactoring.

Open

    def sv_potential_species_homonyms
      if persisted? && is_species_rank? && is_available?
        if TaxonNameRelationship.where_subject_is_taxon_name(self).homonym_or_suppressed.empty?
          if self.id == self.lowest_rank_coordinated_taxon.id
            name1 = self.cached_primary_homonym ? self.cached_primary_homonym : nil

• Read up
  Read up

File protonym.rb has 705 lines of code (exceeds 250 allowed). Consider refactoring.

Open

require_dependency Rails.root.to_s + '/app/models/taxon_name_relationship.rb'
#
# Force the loading of TaxonNameRelationships in all worlds.  This allows us to edit without restarting in development.
# Dir[Rails.root.to_s + '/app/models/taxon_name_relationship/**/*.rb'].sort.each {|file| require_dependency file }
#

Class CollectingEvent has 79 methods (exceeds 20 allowed). Consider refactoring.

Open

class CollectingEvent < ApplicationRecord
  include Housekeeping
  include Shared::Citations
  include Shared::DataAttributes
  include Shared::HasRoles

File collecting_event.rb has 657 lines of code (exceeds 250 allowed). Consider refactoring.

Open

class CollectingEvent < ApplicationRecord
  include Housekeeping
  include Shared::Citations
  include Shared::DataAttributes
  include Shared::HasRoles

File dwca.rb has 632 lines of code (exceeds 250 allowed). Consider refactoring.

Open

module BatchLoad
  # TODO: Originally transliterated from Import::CollectingEvents: Remove this to-do after successful operation.
  class Import::DWCA < BatchLoad::Import

    attr_accessor :collecting_events

Method remaining_taxa has a Cognitive Complexity of 67 (exceeds 5 allowed). Consider refactoring.

Open

  def remaining_taxa
    #    @error_tolerance  - integer
    #    @eliminate_unknown  'true' or 'false'
    #    @descriptors_hash

• Read up
  Read up

Method date_regex_from_verbatim_label has 261 lines of code (exceeds 25 allowed). Consider refactoring.

Open

  def self.date_regex_from_verbatim_label(text)
    return nil if text.blank?
    text = ' ' + text.downcase + ' '

    date = {}

Method generate has a Cognitive Complexity of 63 (exceeds 5 allowed). Consider refactoring.

Open

  def self.generate(otu, reference_csv = nil)
    CSV.generate(col_sep: "\t") do |csv|
      csv << %w{
        ID
        basionymID

• Read up
  Read up

Function init has 234 lines of code (exceeds 25 allowed). Consider refactoring.

Open

  init: function () {
    var soft_validations = undefined;
    function fillSoftValidation() {
      if (soft_validations == undefined) {
        if ($('[data-global-id]').length) {

File data.rb has 543 lines of code (exceeds 250 allowed). Consider refactoring.

Open

concern :data_routes do |options|
  collection do
    get 'download'
    get 'list'
    post 'batch_create'