Class CollectingEventsController has 33 methods (exceeds 20 allowed). Consider refactoring.

Open

class CollectingEventsController < ApplicationController
  include DataControllerConfiguration::ProjectDataControllerConfiguration

  before_action :set_collecting_event, only: [:show, :edit, :update, :destroy, :card, :clone, :navigation]
  after_action -> { set_pagination_headers(:collecting_events) }, only: [:index, :api_index], if: :json_request?

Class Filter has 33 methods (exceeds 20 allowed). Consider refactoring.

Open

    class Filter < Query::Filter
      include Queries::Concerns::DataAttributes
      include Queries::Concerns::Notes
      include Queries::Concerns::Tags

Method include_multistate_matrix has a Cognitive Complexity of 28 (exceeds 5 allowed). Consider refactoring.

Open

  def include_multistate_matrix(options = {})
    opt = {target: '', descriptors: []}.merge!(options)
    xml = Builder::XmlMarkup.new(target: opt[:target])

    m = opt[:observation_matrix]

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Method all_sub_headers has a Cognitive Complexity of 28 (exceeds 5 allowed). Consider refactoring.

Open

  def all_sub_headers(filtered = false)
    unless filtered
      ce_headers # generate the header structure (see CollectionObject.selected_column_names)
      co_headers
      bc_headers

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Method data_for has 101 lines of code (exceeds 25 allowed). Consider refactoring.

Open

  def self.data_for(collection_object)
    o = collection_object
    data = Catalog::CollectionObject::Entry.new(o)

    data.items << Catalog::CollectionObject::EntryItem.new(type: :collected_on, object: o.collecting_event, start_date: o.collecting_event.start_date, end_date: o.collecting_event.end_date) if o.collecting_event_id.present?

File otus_controller.rb has 331 lines of code (exceeds 250 allowed). Consider refactoring.

Open

class OtusController < ApplicationController
  include DataControllerConfiguration::ProjectDataControllerConfiguration

  before_action :set_otu, only: [
    :show, :edit, :update, :destroy, :collection_objects, :navigation,

Method sv_validate_name has a Cognitive Complexity of 27 (exceeds 5 allowed). Consider refactoring.

Open

    def sv_validate_name
      correct_name_format = false

      if rank_class
        # TODO: name these Regexp somewhere

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Method sv_potential_genus_homonyms has a Cognitive Complexity of 27 (exceeds 5 allowed). Consider refactoring.

Open

    def sv_potential_genus_homonyms
      if persisted? && is_genus_rank? && is_available?
        if TaxonNameRelationship.where_subject_is_taxon_name(self).homonym_or_suppressed.empty?
          if self.id == self.lowest_rank_coordinated_taxon.id
            name1 = self.cached_primary_homonym ? self.cached_primary_homonym : nil

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Method descriptors_hash_initiate has a Cognitive Complexity of 27 (exceeds 5 allowed). Consider refactoring.

Open

  def descriptors_hash_initiate
    h = {}

    descriptors_with_keywords.each do |d|
      h[d.id] = {}

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Method significant_digits has a Cognitive Complexity of 27 (exceeds 5 allowed). Consider refactoring.

Open

    def self.significant_digits(number_string)
      # is there a decimal point?
      intg = ''
      decimal_point_zeros = ''
      mantissa = ''

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Class Result has 31 methods (exceeds 20 allowed). Consider refactoring.

Open

  class Result
    SMALL_WIDTH = 100
    LARGE_WIDTH = 400

    TEXT_MAP = {

Method date_sql_from_params has a Cognitive Complexity of 26 (exceeds 5 allowed). Consider refactoring.

Open

  def self.date_sql_from_params(params)
    st_date, end_date = params['st_datepicker'], params['en_datepicker']
    # processing start date data
    st_year, st_month, st_day = params['start_date_year'], params['start_date_month'], params['start_date_day']
    unless st_date.blank?

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Method to_s_verbose has a Cognitive Complexity of 26 (exceeds 5 allowed). Consider refactoring.

Open

  def to_s_verbose
    d = data
    str = ''

    d.keys.sort{|a,b| (a || 'zzz') <=> (b || 'zzz')}.each do |c|

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Method conform_significant has a Cognitive Complexity of 26 (exceeds 5 allowed). Consider refactoring.

Open

    def self.conform_significant(number, sig_digits)
      input = significant_digits(number.to_s)
      input_string = input[0]
      intg = input[2]
      decimal_point = input[3]

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File filter.rb has 320 lines of code (exceeds 250 allowed). Consider refactoring.

Open

module Queries
  module CollectingEvent
    class Filter < Query::Filter

      # Params exists for all CollectingEvent attributes except these.

Class Filter has 30 methods (exceeds 20 allowed). Consider refactoring.

Open

    class Filter < Query::Filter

      # Params exists for all CollectingEvent attributes except these.
      # geographic_area_id is excluded because we handle it specially in conjunction with `geographic_area_mode``
      # Definition must preceed include.

Method generate has 90 lines of code (exceeds 25 allowed). Consider refactoring.

Open

  def self.generate(otu, project_members, reference_csv = nil)
     name_total = 0
    ::CSV.generate(col_sep: "\t") do |csv|
      csv << %w{
        ID

Method generate has a Cognitive Complexity of 25 (exceeds 5 allowed). Consider refactoring.

Open

  def self.generate(otus, project_members, reference_csv = nil)
    ::CSV.generate(col_sep: "\t") do |csv|

      csv << %w{taxonID nameID status remarks referenceID modified modifiedBy}

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Class SourcesController has 29 methods (exceeds 20 allowed). Consider refactoring.

Open

class SourcesController < ApplicationController
  include DataControllerConfiguration::SharedDataControllerConfiguration

  before_action :set_source, only: [:show, :edit, :update, :destroy, :clone, :api_show]
  after_action -> { set_pagination_headers(:sources) }, only: [:index, :api_index ], if: :json_request?

Method build_collecting_events has a Cognitive Complexity of 24 (exceeds 5 allowed). Consider refactoring.

Open

    def build_collecting_events
      # DRMFieldNumbers DRMFN
      namespace_drm_field_numbers = Namespace.find_by(name: 'DRMFieldNumbers')

      @total_data_lines = 0

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