SysMO-DB/seek

Function redraw has 244 lines of code (exceeds 25 allowed). Consider refactoring.

Open

    canvas_prototype.redraw = function( forcedContext, drawAll, forcedZoom, forcedPan ) {
        var r = this;

        if( this.averageRedrawTime === undefined ){ this.averageRedrawTime = 0; }

File modified_cytoscape.js has 563 lines of code (exceeds 250 allowed). Consider refactoring.

Open

/*
   Some cystoscape functions are overiden here, in order to:
   - Fix bugs
   - Change the default behavior which can not do through api or configuration
 */

Function run has 186 lines of code (exceeds 25 allowed). Consider refactoring.

Open

    $$("layout", "breadthfirst").prototype.run = function(){
        var params = this.options;
        var options = params;

        var cy = params.cy;

Function roundRectangleIntersectLine has 97 lines of code (exceeds 25 allowed). Consider refactoring.

Open

    canvas_prototype.roundRectangleIntersectLine = function(
        x, y, nodeX, nodeY, width, height, padding) {

        //Manually change for seek to fix that safari quits unexpectedly
        var cornerRadius = 0;

Function roundRectangleIntersectLine has 7 arguments (exceeds 4 allowed). Consider refactoring.

Open

        x, y, nodeX, nodeY, width, height, padding) {

Avoid too many return statements within this function.

Open

                return [arcIntersections[0], arcIntersections[1]];

Avoid too many return statements within this function.

Open

                return [arcIntersections[0], arcIntersections[1]];

Avoid too many return statements within this function.

Open

                return [arcIntersections[0], arcIntersections[1]];

Avoid too many return statements within this function.

Open

                return [arcIntersections[0], arcIntersections[1]];

Similar blocks of code found in 2 locations. Consider refactoring.

Open

                for (var index = 0; index < elesNotInDragLayer.length; index++) {
                    element = elesNotInDragLayer[index];

                    if (element._private.group == "nodes") {
                        r.drawNodeText(context, element);

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Similar blocks of code found in 2 locations. Consider refactoring.

Open

                for (var index = 0; index < elesInDragLayer.length; index++) {
                    element = elesInDragLayer[index];

                    if (element._private.group == "nodes") {
                        r.drawNodeText(context, element);

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Similar blocks of code found in 3 locations. Consider refactoring.

Open

        {
            var topLeftCenterX = nodeX - halfWidth + cornerRadius;
            var topLeftCenterY = nodeY - halfHeight + cornerRadius
            arcIntersections = this.intersectLineCircle(
                x, y, nodeX, nodeY,

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Similar blocks of code found in 3 locations. Consider refactoring.

Open

        {
            var bottomRightCenterX = nodeX + halfWidth - cornerRadius;
            var bottomRightCenterY = nodeY + halfHeight - cornerRadius
            arcIntersections = this.intersectLineCircle(
                x, y, nodeX, nodeY,

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Similar blocks of code found in 3 locations. Consider refactoring.

Open

        {
            var topRightCenterX = nodeX + halfWidth - cornerRadius;
            var topRightCenterY = nodeY - halfHeight + cornerRadius
            arcIntersections = this.intersectLineCircle(
                x, y, nodeX, nodeY,

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Similar blocks of code found in 2 locations. Consider refactoring.

Open

                if( !elesInDragLayer || !elesNotInDragLayer ){
                    elesInDragLayer = [];
                    elesNotInDragLayer = [];

                    for (var index = 0; index < elements.length; index++) {

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Similar blocks of code found in 2 locations. Consider refactoring.

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                if( !elesInDragLayer || !elesNotInDragLayer ){
                    elesInDragLayer = [];
                    elesNotInDragLayer = [];

                    for (var index = 0; index < elements.length; index++) {

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Similar blocks of code found in 2 locations. Consider refactoring.

Open

        {
            var rightStartX = nodeX + halfWidth + padding;
            var rightStartY = nodeY - halfHeight + cornerRadius - padding;
            var rightEndX = rightStartX;
            var rightEndY = nodeY + halfHeight - cornerRadius + padding;

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Similar blocks of code found in 2 locations. Consider refactoring.

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        {
            var bottomStartX = nodeX - halfWidth + cornerRadius - padding;
            var bottomStartY = nodeY + halfHeight + padding;
            var bottomEndX = nodeX + halfWidth - cornerRadius + padding;
            var bottomEndY = bottomStartY;

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Similar blocks of code found in 2 locations. Consider refactoring.

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        {
            var leftStartX = nodeX - halfWidth - padding;
            var leftStartY = nodeY - halfHeight + cornerRadius - padding;
            var leftEndX = leftStartX;
            var leftEndY = nodeY + halfHeight - cornerRadius + padding;

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Similar blocks of code found in 2 locations. Consider refactoring.

Open

        {
            var topStartX = nodeX - halfWidth + cornerRadius - padding;
            var topStartY = nodeY - halfHeight - padding;
            var topEndX = nodeX + halfWidth - cornerRadius + padding;
            var topEndY = topStartY;

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Similar blocks of code found in 2 locations. Consider refactoring.

Open

                for (var index = 0; index < elesInDragLayer.length; index++) {
                    element = elesInDragLayer[index];

                    if (element._private.group == "nodes") {
                        r.drawNode(context, element);

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Similar blocks of code found in 2 locations. Consider refactoring.

Open

                for (var index = 0; index < elesNotInDragLayer.length; index++) {
                    element = elesNotInDragLayer[index];

                    if (element._private.group == "nodes") {
                        r.drawNode(context, element);

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Identical blocks of code found in 2 locations. Consider refactoring.

Open

                if( !drawAll ){
                    context.setTransform(1, 0, 0, 1, 0, 0);
                    context.clearRect(0, 0, context.canvas.width, context.canvas.height);

                    context.translate(effectivePan.x, effectivePan.y);

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Similar blocks of code found in 3 locations. Consider refactoring.

Open

                    context.fillStyle = "rgba("
                        + coreStyle["selection-box-color"].value[0] + ","
                        + coreStyle["selection-box-color"].value[1] + ","
                        + coreStyle["selection-box-color"].value[2] + ","
                        + coreStyle["selection-box-opacity"].value + ")";

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Similar blocks of code found in 3 locations. Consider refactoring.

Open

                    context.fillStyle = "rgba("
                        + coreStyle["active-bg-color"].value[0] + ","
                        + coreStyle["active-bg-color"].value[1] + ","
                        + coreStyle["active-bg-color"].value[2] + ","
                        + coreStyle["active-bg-opacity"].value + ")";

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Identical blocks of code found in 2 locations. Consider refactoring.

Open

                if( !drawAll ){
                    context.setTransform(1, 0, 0, 1, 0, 0);
                    context.clearRect(0, 0, context.canvas.width, context.canvas.height);

                    context.translate(effectivePan.x, effectivePan.y);

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Similar blocks of code found in 3 locations. Consider refactoring.

Open

                        context.strokeStyle = "rgba("
                            + coreStyle["selection-box-border-color"].value[0] + ","
                            + coreStyle["selection-box-border-color"].value[1] + ","
                            + coreStyle["selection-box-border-color"].value[2] + ","
                            + coreStyle["selection-box-opacity"].value + ")";

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Similar blocks of code found in 2 locations. Consider refactoring.

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            for( var i = 0; i < subgraph.length; i++ ){
                var depth = id2depth[ subgraph[i].id() ];

                if( depth !== undefined ){
                    depths[depth].push( node );

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Similar blocks of code found in 2 locations. Consider refactoring.

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            for( var i = 0; i < neighbors.length; i++ ){
                var depth = id2depth[ neighbors[i].id() ];

                if( depth !== undefined ){
                    depths[depth].push( node );

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Similar blocks of code found in 2 locations. Consider refactoring.

Open

                        context.strokeRect(
                            data.select[0],
                            data.select[1],
                            data.select[2] - data.select[0],
                            data.select[3] - data.select[1]);

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Similar blocks of code found in 2 locations. Consider refactoring.

Open

                    context.fillRect(
                        data.select[0],
                        data.select[1],
                        data.select[2] - data.select[0],
                        data.select[3] - data.select[1]);

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