Avoid deeply nested control flow statements.

Open

                        switch ($field_type[$i]) {
                            case 'int':
                                $out = $row[$i];
                                break;
                            case 'string':

Function setupDatabase has a Cognitive Complexity of 8 (exceeds 5 allowed). Consider refactoring.

Open

    public function setupDatabase(Database $database)
    {
        $tmp = tempnam($_ENV['TEMP_FOLDER'], 'dblocal');
        $dbFileContents = $this->generateDbFileContent($database);
        file_put_contents($tmp, $dbFileContents);

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Function debug has a Cognitive Complexity of 8 (exceeds 5 allowed). Consider refactoring.

Open

function debug($text, $prefix = null, $hr = '')
{
    if (isset($_ENV['TRIM_DEBUG']) && $_ENV['TRIM_DEBUG'] === true) {
        $prefix = '[' . date('Y-m-d H:i:s') . '][debug]:' . ($prefix ? " {$prefix}" : '');
        $output = "\n";

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Function getCompatibleVersions has a Cognitive Complexity of 8 (exceeds 5 allowed). Consider refactoring.

Open

    public function getCompatibleVersions(bool $withBlank = true)
    {
        $versions = $this->getVersions();
        $checkTikiVersionRequirement = $this->getTikiRequirementsHelper();
        $compatible = [];

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Function log has a Cognitive Complexity of 8 (exceeds 5 allowed). Consider refactoring.

Open

    public function log($level, $message, array $context = [])
    {
        if (!isset($this->verbosityLevelMap[$level])) {
            throw new InvalidArgumentException(sprintf('The log level "%s" does not exist.', $level));
        }

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Function checksumFolder has a Cognitive Complexity of 8 (exceeds 5 allowed). Consider refactoring.

Open

    public static function checksumFolder($folder, $callback = null)
    {
        $result = [];

        if (!is_callable($callback)) {

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Function performActualUpdate has a Cognitive Complexity of 8 (exceeds 5 allowed). Consider refactoring.

Open

    public function performActualUpdate(Version $version, $options = [])
    {
        $access = $this->instance->getBestAccess('scripting');
        $vcsType = $this->vcs_instance->getIdentifier();
        $can_svn = $access->hasExecutable('svn') && $vcsType == 'SVN';

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Function formatHtml has a Cognitive Complexity of 8 (exceeds 5 allowed). Consider refactoring.

Open

    private function formatHtml($matches)
    {
        $out = '<span style="';
        foreach (explode(';', $matches[1]) as $code) {
            if (isset(self::$availableForegroundColors[$code])) {

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Function detectDistro has a Cognitive Complexity of 8 (exceeds 5 allowed). Consider refactoring.

Open

    public function detectDistro()
    {
        if (isset($this->config['distro'])) {
            return $this->config['distro'];
        }

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Function exec has a Cognitive Complexity of 8 (exceeds 5 allowed). Consider refactoring.

Open

    public function exec($targetFolder, $toAppend)
    {
        static $tmpFolderChecked;
        if ((empty($tmpFolderChecked) || !in_array(
            $targetFolder,

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Method __construct has 5 arguments (exceeds 4 allowed). Consider refactoring.

Open

    public function __construct(Instance $instance, bool $direct = false, bool $onlyData = false, bool $skipSystemConfigurationCheck = false, $allowCommonParents = 0)

Method registerAccessMethod has 5 arguments (exceeds 4 allowed). Consider refactoring.

Open

    public function registerAccessMethod($type, $host, $user, $password = null, $port = null)

Method __construct has 5 arguments (exceeds 4 allowed). Consider refactoring.

Open

    public function __construct(string $name, string $version, SoftwareRequirement $phpVersion, SoftwareRequirement $mysqlVersion, SoftwareRequirement $mariaDBVersion)

Function remove has a Cognitive Complexity of 7 (exceeds 5 allowed). Consider refactoring.

Open

    private function remove($helper, $input, $output)
    {
        $report = new ReportManager;
        $instances = $report->getReportInstances();
        $instancesInfo = CommandHelper::getInstancesInfo($instances);

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Function modify has a Cognitive Complexity of 7 (exceeds 5 allowed). Consider refactoring.

Open

    private function modify($helper, $input, $output)
    {
        $report = new ReportManager;
        $instances = $report->getReportInstances();
        $instancesInfo = CommandHelper::getInstancesInfo($instances);

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Function execute has a Cognitive Complexity of 7 (exceeds 5 allowed). Consider refactoring.

Open

    protected function execute(InputInterface $input, OutputInterface $output)
    {
        $instances = CommandHelper::getInstances('tiki');
        $instancesInfo = CommandHelper::getInstancesInfo($instances);

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Function execute has a Cognitive Complexity of 7 (exceeds 5 allowed). Consider refactoring.

Open

    protected function execute(InputInterface $input, OutputInterface $output)
    {
        $instance = new Instance();
        try {
            if ($input->isInteractive()) {

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Function setInstanceSetupError has a Cognitive Complexity of 7 (exceeds 5 allowed). Consider refactoring.

Open

    public static function setInstanceSetupError($instanceId, \Exception $e = null)
    {
        $errors = [];
        $io = App::get('io');

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Function updateInstanceTo has a Cognitive Complexity of 7 (exceeds 5 allowed). Consider refactoring.

Open

    public function updateInstanceTo($path, $branch)
    {
        $info = $this->info($path);
        $root = $info['repository']['root'];
        $url = $info['url'];

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Function getFileLocations has a Cognitive Complexity of 7 (exceeds 5 allowed). Consider refactoring.

Open

    public function getFileLocations()
    {
        $access = $this->instance->getBestAccess('scripting');
        $webroot = rtrim($this->instance->webroot, '/');
        $out = $access->runPHP(

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