File contmap.py has 1495 lines of code (exceeds 250 allowed). Consider refactoring.

Open

from __future__ import absolute_import, division, print_function

import warnings
from copy import deepcopy
from functools import partial

ContMap has 37 functions (exceeds 20 allowed). Consider refactoring.

Open

class ContMap(NDDataArray):
    """A ContMap object represent a continuum map with additionnal capabilities.

    It contains the metadata, wcs, and all attribute (data/stddev/time/unit/mask) as well as potential source list detected in these maps.

File analysis.py has 364 lines of code (exceeds 250 allowed). Consider refactoring.

Open

from __future__ import absolute_import, division, print_function

import os
import warnings
import numpy as np

Function phot_sources has a Cognitive Complexity of 31 (exceeds 5 allowed). Consider refactoring.

Open

    def phot_sources(
        self,
        sources=None,
        peak=True,
        psf=True,

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Function to_hdus has a Cognitive Complexity of 28 (exceeds 5 allowed). Consider refactoring.

Open

    def to_hdus(
        self,
        hdu_data="DATA",
        hdu_mask="MASK",
        hdu_uncertainty="UNCERT",

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Function __init__ has a Cognitive Complexity of 28 (exceeds 5 allowed). Consider refactoring.

Open

    def __init__(
        self,
        major=None,
        minor=None,
        pa=None,

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Function __init__ has a Cognitive Complexity of 22 (exceeds 5 allowed). Consider refactoring.

Open

    def __init__(self, filenames, n=None, ipython_widget=False, ignore_header=False, dataclass=NikaMap, **kwd):
        self.i = 0
        self.n = n
        self.dataclass = dataclass
        self.kwargs = kwd

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Function _gen_reproject has a Cognitive Complexity of 17 (exceeds 5 allowed). Consider refactoring.

Open

    def _gen_reproject(self, coords, size, type="interp", pixel_scales=None, **kwargs):
        """Generate reprojected 2D cutout from a catalog of coordinates

        Parameters
        ----------

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Function from_fits_header has a Cognitive Complexity of 17 (exceeds 5 allowed). Consider refactoring.

Open

    def from_fits_header(cls, hdr, unit=u.deg, pixscale=None):  # pragma: no cover
        """
        Instantiate the beam from a header. Attempts to extract the
        beam from standard keywords. Failing that, it looks for an
        AIPS-style HISTORY entry.

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Function plot has a Cognitive Complexity of 16 (exceeds 5 allowed). Consider refactoring.

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    def plot(self, to_plot=None, ax=None, cbar=False, cat=None, levels=None, beam=False, **kwargs):
        """Convenience routine to plot the dataset.

        Parameters
        ----------

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Function detect_sources has a Cognitive Complexity of 15 (exceeds 5 allowed). Consider refactoring.

Open

    def detect_sources(self, threshold=3, box_size=5, detect_on="snr"):
        """Detect sources with find local peaks above a specified threshold value.

        The detection is made on the SNR map, and return an :class`astropy.table.Table` with columns ``ID, ra, dec, SNR``.
        If fake sources are present, a match is made with a distance threshold of ``beam_fwhm / 3``

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Function __init__ has a Cognitive Complexity of 14 (exceeds 5 allowed). Consider refactoring.

Open

    def __init__(self, data, *args, **kwargs):
        if "meta" not in kwargs:
            kwargs["meta"] = kwargs.pop("header", None)
        if "header" in kwargs:
            raise ValueError("can't have both header and meta.")

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Function fake_data has 12 arguments (exceeds 4 allowed). Consider refactoring.

Open

def fake_data(

Function uncertainty has a Cognitive Complexity of 12 (exceeds 5 allowed). Consider refactoring.

Open

    def uncertainty(self, value):
        if value is not None:
            if isinstance(value, NDUncertainty):
                if getattr(value, "_parent_nddata", None) is not None:
                    value = value.__class__(value, copy=False)

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Function normalize_uncertainty has a Cognitive Complexity of 11 (exceeds 5 allowed). Consider refactoring.

Open

    def normalize_uncertainty(self, factor=None, method="check_SNR", **kwargs):
        """Normalize the uncertainty.value

        Parameters
        ----------

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Function fits_contmap_reader has a Cognitive Complexity of 11 (exceeds 5 allowed). Consider refactoring.

Open

def fits_contmap_reader(
    filename,
    unit=None,
    hdu_data="DATA",
    hdu_uncertainty="UNCERT",

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Function __init__ has 10 arguments (exceeds 4 allowed). Consider refactoring.

Open

    def __init__(

Function from_fits_history has a Cognitive Complexity of 11 (exceeds 5 allowed). Consider refactoring.

Open

    def from_fits_history(cls, hdr, pixscale=None):  # pragma: no cover
        """
        Instantiate the beam from an AIPS header. AIPS holds the beam
        in history. This method of initializing uses the last such
        entry.

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Function phot_sources has 9 arguments (exceeds 4 allowed). Consider refactoring.

Open

    def phot_sources(

Function fits_contmap_reader has 8 arguments (exceeds 4 allowed). Consider refactoring.

Open

def fits_contmap_reader(