Function render has 39 lines of code (exceeds 25 allowed). Consider refactoring.

Open

  render() {
    const diseases = this.props.data;
    const filename = this.props.filename;

    // the way the incoming data is grouped doesn't exactly align with the way

Function render has 36 lines of code (exceeds 25 allowed). Consider refactoring.

Open

  render() {
    // let externalPrefix = 'http://bw.scottcain.net/jbrowse/?data=data%2F';
    // let externalPrefix = 'http://ec2-34-208-22-23.us-west-2.compute.amazonaws.com/jbrowse/overview.html?data=data%2F';
    // let externalPrefix = 'http://localhost/jbrowse/overview.html?data=data%2F';
    let externalPrefix = 'http://jbrowse.alliancegenome.org/jbrowse/overview.html?data=data%2F';

Function renderRows has 36 lines of code (exceeds 25 allowed). Consider refactoring.

Open

  renderRows() {
    let entries = this.props.entries;
    let fields = this.getFields();
    let rowNodes = entries.map( (d, i) => {
      let nodes = fields.map( (field) => {

Function render has 36 lines of code (exceeds 25 allowed). Consider refactoring.

Open

  render() {
    const { columns, data, filename } = this.props;
    const options = {
      exportCSVSeparator: '\t',
      exportCSVText: 'Download',

Function makeFieldDisplayName has 35 lines of code (exceeds 25 allowed). Consider refactoring.

Open

export function makeFieldDisplayName(unformattedName) {
  unformattedName = unformattedName || '';

  switch(unformattedName) {
  case 'go':

Function render has 34 lines of code (exceeds 25 allowed). Consider refactoring.

Open

  render() {
    const options = {
      onPageChange: this.handlePageChange,
      onSortChange: this.handleSortChange,
      onSizePerPageList: this.handleCountChange,

Function render has 32 lines of code (exceeds 25 allowed). Consider refactoring.

Open

  render() {
    let _getSuggestionValue = ( d => d.name );
    let _inputProps = {
      placeholder: 'search a gene or GO term',
      value: this.state.value,

Function attach_annotations has a Cognitive Complexity of 11 (exceeds 5 allowed). Consider refactoring.

Open

    def attach_annotations(gene, annots, go_data):
        go_blacklist = ("GO:0008150", "GO:0003674", "GO:0005575")
        gene_id = gene['primaryId']
        gene_symbol = gene['symbol']
        species = gene['species']

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Function getQueryParamWithValueChanged has a Cognitive Complexity of 11 (exceeds 5 allowed). Consider refactoring.

Open

export function getQueryParamWithValueChanged(key, val, queryParams, isClear=false) {
  let qp = _.clone(queryParams || {});
  let oldVal = _.clone(qp[key]);
  let isSingleValField = (SINGLE_VAL_FIELDS.indexOf(key) > -1);
  if (isSingleValField || oldVal === null || typeof oldVal === 'undefined') {

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Function getQueryParamWithValueChanged has 31 lines of code (exceeds 25 allowed). Consider refactoring.

Open

export function getQueryParamWithValueChanged(key, val, queryParams, isClear=false) {
  let qp = _.clone(queryParams || {});
  let oldVal = _.clone(qp[key]);
  let isSingleValField = (SINGLE_VAL_FIELDS.indexOf(key) > -1);
  if (isSingleValField || oldVal === null || typeof oldVal === 'undefined') {

Function render has 31 lines of code (exceeds 25 allowed). Consider refactoring.

Open

  render() {
    const columns = [
      {
        field: 'do_name',
        label: 'Disease Name',

Function renderFilterValues has 30 lines of code (exceeds 25 allowed). Consider refactoring.

Open

  renderFilterValues() {
    let values = this.props.values.slice(0, this.state.numVisible);
    let mode = this.props.queryParams.mode;
    let isGraphMode = (this.props.name === 'species' && (mode === 'graph' || mode === 'chord'));
    return values.map( d => {

Function render has 29 lines of code (exceeds 25 allowed). Consider refactoring.

Open

  render() {
    let container=[];
    let post_title='News And Events';
    /* keep trck of the number of published posts */
    let posts_count=1;

Function render has 28 lines of code (exceeds 25 allowed). Consider refactoring.

Open

  render() {
    let logs = this.props.logs;
    let label = this.props.label;
    if (!logs) return null;
    label = label || DEFAULT_LABEL;

Function renderRows has a Cognitive Complexity of 10 (exceeds 5 allowed). Consider refactoring.

Open

  renderRows() {
    let entries = this.props.entries;
    let fields = this.getFields();
    let rowNodes = entries.map( (d, i) => {
      let nodes = fields.map( (field) => {

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Function graph_visualization has a Cognitive Complexity of 10 (exceeds 5 allowed). Consider refactoring.

Open

def graph_visualization(formatted_search_results):
    nodes = {}
    edges = []

    for result in formatted_search_results:

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Function renderBottomPanel has 27 lines of code (exceeds 25 allowed). Consider refactoring.

Open

  renderBottomPanel(props) {
    return (
      <div>
        {
          this.props.paginated &&

Function render has 27 lines of code (exceeds 25 allowed). Consider refactoring.

Open

  render() {
    return (
      <div className='row'>
        <div className='col-sm-4 push-sm-8'>
          <DataSourceCard reference={this.state.geneData.modCrossReference} species={this.state.geneData.species} />

Function rowNodes has 27 lines of code (exceeds 25 allowed). Consider refactoring.

Open

    let rowNodes = entries.map( (d, i) => {
      let nodes = fields.map( (field) => {
        let isMakeLowercase = d.category === 'disease';
        let _className = isMakeLowercase ? style.lowercase : null;
        let _key = `srtc.${i}.${field}`;

Function format_autocomplete_results has a Cognitive Complexity of 9 (exceeds 5 allowed). Consider refactoring.

Open

def format_autocomplete_results(es_response, field='name_key'):
    formatted_results = []

    if field != 'name_key':
        results = es_response['aggregations'][field]['buckets']

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