Function plot has a Cognitive Complexity of 7 (exceeds 5 allowed). Consider refactoring.

Open

    def plot(self, figsize=None, ax=None):
        if self.dim == 2:
            tri, cb = plot(self.expression, mesh=self.domain, ax=ax)
            fig = plt.gcf()
            ax = fig.axes

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Function build_geometry has a Cognitive Complexity of 7 (exceeds 5 allowed). Consider refactoring.

Open

def build_geometry(pmesh):
    pmesh_scatt = 1 * pmesh
    b = a * 2 * 1.2
    box_size = (b, b, b)
    pml_width = (lambda0, lambda0, lambda0)

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Function weak has a Cognitive Complexity of 7 (exceeds 5 allowed). Consider refactoring.

Open

    def weak(self, a):
        self.mesh = a.function_space().mesh() if self._mesh is None else self._mesh
        self.dim = self.mesh.ufl_domain().geometric_dimension()
        self.function_space = self._function_space or df.FunctionSpace(
            self.mesh, "CG", self.degree

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Function set_size has a Cognitive Complexity of 7 (exceeds 5 allowed). Consider refactoring.

Open

    def set_size(self, idf, s, dim=None):
        if hasattr(idf, "__len__") and not isinstance(idf, str):
            for i, id_ in enumerate(idf):
                s_ = s[i] if hasattr(s, "__len__") else s
                params = {id_: s_}

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Function jacobian_matrix has a Cognitive Complexity of 7 (exceeds 5 allowed). Consider refactoring.

Open

    def jacobian_matrix(self):
        if self.direction == "x":
            s = self.stretch, 1, 1
        elif self.direction == "y":
            s = 1, self.stretch, 1

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Function compute_absorption has a Cognitive Complexity of 7 (exceeds 5 allowed). Consider refactoring.

Open

    def compute_absorption(self, subdomain_absorption=False):
        omega = self.source.pulsation
        doms_no_pml = [
            z for z in self.epsilon.keys() if z not in ["pml_bottom", "pml_top"]
        ]

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Function plot_field has a Cognitive Complexity of 7 (exceeds 5 allowed). Consider refactoring.

Open

    def plot_field(
        self,
        nper=1,
        type="real",
        field="total",

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Function _complexcheck has a Cognitive Complexity of 7 (exceeds 5 allowed). Consider refactoring.

Open

def _complexcheck(func):
    """Wrapper to check if arguments are complex"""

    def wrapper(self, z):
        if hasattr(z, "real") and hasattr(z, "imag"):

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Avoid too many return statements within this function.

Open

        return ((2 * n + 1) * (n - 1) / (n + 1)) ** 0.5 * x * u(x, n - 1, n - 1)

Avoid too many return statements within this function.

Open

        return ((2 * n + 1) * (n - 1) / ((n + 1) * (n**2 - m**2))) ** 0.5 * (

Avoid too many return statements within this function.

Open

        return (((2 * n + 1) / (n**2 - m**2)) ** 0.5) * (

Function solve_system has a Cognitive Complexity of 6 (exceeds 5 allowed). Consider refactoring.

Open

    def solve_system(self, again=False, vector_function=True):
        """Solve the discretized system.

        Parameters
        ----------

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Function _get_effective_param has a Cognitive Complexity of 6 (exceeds 5 allowed). Consider refactoring.

Open

    def _get_effective_param(self, case):
        self.solve_param(case)
        coeff = self.formulation.epsilon if case == "epsilon" else self.formulation.mu
        param = coeff.as_subdomain()
        if param.real.ufl_shape == (3, 3):

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Function update has a Cognitive Complexity of 6 (exceeds 5 allowed). Consider refactoring.

Open

def update(directory):
    for root, dirs, files in os.walk(directory):
        for file in files:
            if file.endswith(".py"):
                python_file = os.path.abspath(os.path.join(root, file))

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Function read_mesh_file has a Cognitive Complexity of 6 (exceeds 5 allowed). Consider refactoring.

Open

    def read_mesh_file(self, subdomains=None):
        if subdomains is not None:
            if isinstance(subdomains, str):
                subdomains = [subdomains]
            key = "volumes" if self.dim == 3 else "surfaces"

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Function pause has a Cognitive Complexity of 6 (exceeds 5 allowed). Consider refactoring.

Open

def pause(interval):
    backend = plt.rcParams["backend"]
    if backend in matplotlib.rcsetup.interactive_bk:
        figManager = matplotlib._pylab_helpers.Gcf.get_active()
        if figManager is not None:

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Function eval_cell has a Cognitive Complexity of 6 (exceeds 5 allowed). Consider refactoring.

Open

    def eval_cell(self, values, x, cell):
        for sub, val in self.mapping.items():
            if self.markers[cell.index] == self.subdomains[sub]:
                values[:] = val(x) if callable(val) else val

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Function __init__ has a Cognitive Complexity of 6 (exceeds 5 allowed). Consider refactoring.

Open

    def __init__(self, dict, geometry=None, pmls=None, dim=2, degree=1, element=None):
        if pmls is None:
            pmls = []
        self.dict = dict
        self.geometry = geometry

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Function _cross_section_helper has a Cognitive Complexity of 6 (exceeds 5 allowed). Consider refactoring.

Open

    def _cross_section_helper(self, return_type="s", boundaries="calc_bnds"):
        uscatt = self.solution["diffracted"]
        vscatt = self.formulation.get_dual(uscatt)
        utot = self.solution["total"]
        vtot = self.formulation.get_dual(utot)

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Function _check_subdomains has a Cognitive Complexity of 6 (exceeds 5 allowed). Consider refactoring.

Open

    def _check_subdomains(self):
        groups = self.model.getPhysicalGroups()
        names = [self.model.getPhysicalName(*g) for g in groups]
        for subtype, subitems in self.subdomains.items():
            for idf in subitems.copy().keys():

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