Function clinicalTimeline has a Cognitive Complexity of 251 (exceeds 5 allowed). Consider refactoring.

Open

var clinicalTimeline = (function(){
  "use strict";

  var allData,
    colorCycle = d3.scale.category20(),

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Function clinicalTimeline has 954 lines of code (exceeds 25 allowed). Consider refactoring.

Open

var clinicalTimeline = (function(){
  "use strict";

  var allData,
    colorCycle = d3.scale.category20(),

File clinicalTimeline.js has 959 lines of code (exceeds 250 allowed). Consider refactoring.

Open

// vim: ts=2 sw=2
/* start-test-code-not-included-in-build */
d3 = require('d3');
/* end-test-code-not-included-in-build */
var clinicalTimeline = (function(){

Function run has 171 lines of code (exceeds 25 allowed). Consider refactoring.

Open

trimClinicalTimeline.prototype.run = function (timeline, spec) {
  // skip when zoomed in, because trimming behaves oddly in those cases
  if (timeline.zoomFactor() !== 1) {
      return;
  }

Function run has 126 lines of code (exceeds 25 allowed). Consider refactoring.

Open

clinicalTimelineZoom.prototype.run = function(timeline, spec) {
  var readOnlyVars = timeline.getReadOnlyVars(),
    maxDays = readOnlyVars.maxDays,
    minDays = readOnlyVars.minDays,
    beginning = readOnlyVars.beginning,

Function run has a Cognitive Complexity of 33 (exceeds 5 allowed). Consider refactoring.

Open

clinicalTimelineZoom.prototype.run = function(timeline, spec) {
  var readOnlyVars = timeline.getReadOnlyVars(),
    maxDays = readOnlyVars.maxDays,
    minDays = readOnlyVars.minDays,
    beginning = readOnlyVars.beginning,

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Function timeline has 117 lines of code (exceeds 25 allowed). Consider refactoring.

Open

  function timeline() {
    var visibleData = allData.filter(function(x) {
        return x.visible;
    });

Function run has 91 lines of code (exceeds 25 allowed). Consider refactoring.

Open

clinicalTimelineOverviewAxis.prototype.run = function(timeline, spec) {
  var readOnlyVars = timeline.getReadOnlyVars(),
    margin = readOnlyVars.margin,
    overviewAxisWidth = timeline.overviewAxisWidth(),
    chart = readOnlyVars.chart,

Function clinicalTimelineSanityChecker has a Cognitive Complexity of 25 (exceeds 5 allowed). Consider refactoring.

Open

var clinicalTimelineSanityChecker = (function() {
  function validateData(data) {
    for (var i=0; i < data.length; i++) {
      validateTrack(data[i]);
    }

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Function run has 80 lines of code (exceeds 25 allowed). Consider refactoring.

Open

clinicalTimelineExporter.prototype.run = function(timeline, spec) {
  $(spec.exportDivId).css("visibility", "visible");
  return {
    /**
     * Exports the clinical-timeline as SVG

Function addDataPointTooltip has 78 lines of code (exceeds 25 allowed). Consider refactoring.

Open

  timeline.addDataPointTooltip = function addDataPointTooltip(elem) {
    function createDataTable(tooltip_table) {
      var dataTable = {
        "sDom": 't',
        "bJQueryUI": true,

Function brushend has 69 lines of code (exceeds 25 allowed). Consider refactoring.

Open

    var brushend = function() {
      var extentStart = parseInt(d3.select(divId + " .extent").attr("x"));
      var extentEnd = extentStart + parseInt(d3.select(divId+" .extent").attr("width"));
      var zoomFactor, translate;
      // if the zoom region is tiny, the user clicked instead of clicking

Function run has 60 lines of code (exceeds 25 allowed). Consider refactoring.

Open

clinicalTimelineVerticalLine.prototype.run = function(timeline, spec) {
  var divId = timeline.divId(),
    hoverLineGroup = d3.select(divId + " svg").append("g")
      .attr("class", "hover-line"),
    hoverLine = hoverLineGroup

Function addTrackTooltip has 55 lines of code (exceeds 25 allowed). Consider refactoring.

Open

  function addTrackTooltip(elem, data) {
    function hideTrackClickHandler(trackName) {
       return function() {
         toggleTrackVisibility(trackName);
         timeline();

Function run has 49 lines of code (exceeds 25 allowed). Consider refactoring.

Open

clinicalTimelineHelperLines.prototype.run = function(timeline, spec) {
  //enable helper lines only if no zoom and in advanced view
  d3.selectAll(timeline.divId()+" [id^='timelineItem']").on("click", function(x) {
    if (timeline.zoomFactor() === 1) {
      var helperLineGroup = d3.select(timeline.divId() + " svg").append("g").attr("class", "helper-line-group"),

Function addClinicalAttributesTooltip has 43 lines of code (exceeds 25 allowed). Consider refactoring.

Open

  function addClinicalAttributesTooltip(elem, track, clickHandlerType) {
    function colorClickHandler() {
      colorByClinicalAttribute(track, $(this).prop("innerHTML"));
      timeline();
    }

Function clinicalTimelineSanityChecker has 42 lines of code (exceeds 25 allowed). Consider refactoring.

Open

var clinicalTimelineSanityChecker = (function() {
  function validateData(data) {
    for (var i=0; i < data.length; i++) {
      validateTrack(data[i]);
    }

Function clinicalTimelineParser has 41 lines of code (exceeds 25 allowed). Consider refactoring.

Open

var clinicalTimelineParser = (function() {
  function transformToTimelineJSON(clinical_timeline_data) {
    var transformToTrack = function(clin_events) {
      var track = {
        "label":transformLabel(clin_events[0].eventType),

Function mergeTooltipTablesAtEqualTimepoint has 39 lines of code (exceeds 25 allowed). Consider refactoring.

Open

  function mergeTooltipTablesAtEqualTimepoint(trackData) {
    if (!trackData || trackData.times.length === 0) return;

    var collapsedTimes = [],
        group = [],

Function orderTrackTooltipTables has 37 lines of code (exceeds 25 allowed). Consider refactoring.

Open

  timeline.orderTrackTooltipTables = function(track, rowkeys) {
    var trackData = getTrack(allData, track);
    if (trackData.times.length === 0) {
      return timeline;
    }