callahantiff/PheKnowLator

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Bump tqdm from 4.47.0 to 4.66.3 in /builds #808
dependabot[bot] authored bb1edcd1
complete00:00:40
1
git clone
2
codeclimate validate-config
View output
codeclimate validate-config
No checked in config: nothing to validate.
3
codeclimate prepare
View output
codeclimate prepare
4
builder pull-engines
View output
determining required images
5
structure
View output
12
Parser process id: 12
codeclimate-parser socket not present
waiting 1s...
6
duplication
View output
12
Parser process id: 12
codeclimate-parser socket not present
waiting 1s...
I, [2024-05-03T20:00:36.194544 #1]  INFO -- : Skipping file ./pkt_kg/construction_approaches.py due to exception (CC::Engine::Analyzers::ParserError): `python2 /usr/src/app/lib/cc/engine/analyzers/python/parser.py` exited with code 1:
Traceback (most recent call last):
  File "/usr/src/app/lib/cc/engine/analyzers/python/parser.py", line 51, in <module>
    print(json.dumps(to_json(ast.parse(source))))
  File "/usr/local/python2/lib/python2.7/ast.py", line 37, in parse
    return compile(source, filename, mode, PyCF_ONLY_AST)
  File "<unknown>", line 53
    def __init__(self, write_location: str) -> None:
                                     ^
SyntaxError: invalid syntax


I, [2024-05-03T20:00:36.213336 #1]  INFO -- : Skipping file ./pkt_kg/metadata.py due to exception (CC::Engine::Analyzers::ParserError): `python2 /usr/src/app/lib/cc/engine/analyzers/python/parser.py` exited with code 1:
Traceback (most recent call last):
  File "/usr/src/app/lib/cc/engine/analyzers/python/parser.py", line 51, in <module>
    print(json.dumps(to_json(ast.parse(source))))
  File "/usr/local/python2/lib/python2.7/ast.py", line 37, in parse
    return compile(source, filename, mode, PyCF_ONLY_AST)
  File "<unknown>", line 59
    def __init__(self, kg_version: str, write_location: str, kg_location: str, node_data: Optional[List],
                                 ^
SyntaxError: invalid syntax


I, [2024-05-03T20:00:36.223450 #1]  INFO -- : Skipping file ./notebooks/tutorials/entity_search/entity_search.py due to exception (CC::Engine::Analyzers::ParserError): `python2 /usr/src/app/lib/cc/engine/analyzers/python/parser.py` exited with code 1:
Traceback (most recent call last):
  File "/usr/src/app/lib/cc/engine/analyzers/python/parser.py", line 51, in <module>
    print(json.dumps(to_json(ast.parse(source))))
  File "/usr/local/python2/lib/python2.7/ast.py", line 37, in parse
    return compile(source, filename, mode, PyCF_ONLY_AST)
  File "<unknown>", line 24
    def format_path_ancestors(anc_dict: Dict, node_metadata: Dict) -> List:
                                      ^
SyntaxError: invalid syntax


I, [2024-05-03T20:00:36.232907 #1]  INFO -- : Skipping file ./pkt_kg/knowledge_graph.py due to exception (CC::Engine::Analyzers::ParserError): `python2 /usr/src/app/lib/cc/engine/analyzers/python/parser.py` exited with code 1:
Traceback (most recent call last):
  File "/usr/src/app/lib/cc/engine/analyzers/python/parser.py", line 51, in <module>
    print(json.dumps(to_json(ast.parse(source))))
  File "/usr/local/python2/lib/python2.7/ast.py", line 37, in parse
    return compile(source, filename, mode, PyCF_ONLY_AST)
  File "<unknown>", line 74
    def __init__(self, construction: str, node_data: str, inverse_relations: str, decode_owl: str, cpus: int = 1,
                                   ^
SyntaxError: invalid syntax


I, [2024-05-03T20:00:36.264077 #1]  INFO -- : Skipping file ./pkt_kg/utils/data_utils.py due to exception (CC::Engine::Analyzers::ParserError): `python2 /usr/src/app/lib/cc/engine/analyzers/python/parser.py` exited with code 1:
Traceback (most recent call last):
  File "/usr/src/app/lib/cc/engine/analyzers/python/parser.py", line 51, in <module>
    print(json.dumps(to_json(ast.parse(source))))
  File "/usr/local/python2/lib/python2.7/ast.py", line 37, in parse
    return compile(source, filename, mode, PyCF_ONLY_AST)
  File "<unknown>", line 62
    def url_download(url: str, write_location: str, filename: str) -> None:
                        ^
SyntaxError: invalid syntax


I, [2024-05-03T20:00:36.275516 #1]  INFO -- : Skipping file ./pkt_kg/edge_list.py due to exception (CC::Engine::Analyzers::ParserError): `python2 /usr/src/app/lib/cc/engine/analyzers/python/parser.py` exited with code 1:
Traceback (most recent call last):
  File "/usr/src/app/lib/cc/engine/analyzers/python/parser.py", line 51, in <module>
    print(json.dumps(to_json(ast.parse(source))))
  File "/usr/local/python2/lib/python2.7/ast.py", line 37, in parse
    return compile(source, filename, mode, PyCF_ONLY_AST)
  File "<unknown>", line 47
    def __init__(self, data_files: Dict[str, str], source_file: str) -> None:
                                 ^
SyntaxError: invalid syntax


I, [2024-05-03T20:00:36.303718 #1]  INFO -- : Skipping file ./pkt_kg/downloads.py due to exception (CC::Engine::Analyzers::ParserError): `python2 /usr/src/app/lib/cc/engine/analyzers/python/parser.py` exited with code 1:
Traceback (most recent call last):
  File "/usr/src/app/lib/cc/engine/analyzers/python/parser.py", line 51, in <module>
    print(json.dumps(to_json(ast.parse(source))))
  File "/usr/local/python2/lib/python2.7/ast.py", line 37, in parse
    return compile(source, filename, mode, PyCF_ONLY_AST)
  File "<unknown>", line 58
    def __init__(self, data_path: str, resource_data: Optional[str] = None) -> None:
                                ^
SyntaxError: invalid syntax


I, [2024-05-03T20:00:36.312740 #1]  INFO -- : Skipping file ./pkt_kg/utils/kg_utils.py due to exception (CC::Engine::Analyzers::ParserError): `python2 /usr/src/app/lib/cc/engine/analyzers/python/parser.py` exited with code 1:
Traceback (most recent call last):
  File "/usr/src/app/lib/cc/engine/analyzers/python/parser.py", line 51, in <module>
    print(json.dumps(to_json(ast.parse(source))))
  File "/usr/local/python2/lib/python2.7/ast.py", line 37, in parse
    return compile(source, filename, mode, PyCF_ONLY_AST)
  File "<unknown>", line 67
    def gets_ontology_classes(graph: Graph) -> Set:
                                   ^
SyntaxError: invalid syntax


I, [2024-05-03T20:00:36.355531 #1]  INFO -- : Skipping file ./pkt_kg/owlnets.py due to exception (CC::Engine::Analyzers::ParserError): `python2 /usr/src/app/lib/cc/engine/analyzers/python/parser.py` exited with code 1:
Traceback (most recent call last):
  File "/usr/src/app/lib/cc/engine/analyzers/python/parser.py", line 51, in <module>
    print(json.dumps(to_json(ast.parse(source))))
  File "/usr/local/python2/lib/python2.7/ast.py", line 37, in parse
    return compile(source, filename, mode, PyCF_ONLY_AST)
  File "<unknown>", line 82
    def __init__(self, graph: Union[Graph, List, str], write_location: str, filename: str,
                            ^
SyntaxError: invalid syntax


I, [2024-05-03T20:00:36.360907 #1]  INFO -- : Skipping file generates_dependency_documents.py due to exception (CC::Engine::Analyzers::ParserError): `python2 /usr/src/app/lib/cc/engine/analyzers/python/parser.py` exited with code 1:
Traceback (most recent call last):
  File "/usr/src/app/lib/cc/engine/analyzers/python/parser.py", line 51, in <module>
    print(json.dumps(to_json(ast.parse(source))))
  File "/usr/local/python2/lib/python2.7/ast.py", line 37, in parse
    return compile(source, filename, mode, PyCF_ONLY_AST)
  File "<unknown>", line 32
    def __init__(self, edge_count: int, write_location: str = './resources') -> None:
                                 ^
SyntaxError: invalid syntax


I, [2024-05-03T20:00:36.472384 #1]  INFO -- : Skipping file ./builds/data_preprocessing.py due to exception (CC::Engine::Analyzers::ParserError): `python2 /usr/src/app/lib/cc/engine/analyzers/python/parser.py` exited with code 1:
Traceback (most recent call last):
  File "/usr/src/app/lib/cc/engine/analyzers/python/parser.py", line 51, in <module>
    print(json.dumps(to_json(ast.parse(source))))
  File "/usr/local/python2/lib/python2.7/ast.py", line 37, in parse
    return compile(source, filename, mode, PyCF_ONLY_AST)
  File "<unknown>", line 59
    def __init__(self, gcs_bucket: storage.bucket.Bucket, org_data: str, processed_data: str, temp_dir: str) -> None:
                                 ^
SyntaxError: invalid syntax


I, [2024-05-03T20:00:36.543554 #1]  INFO -- : Skipping file ./builds/ontology_cleaning.py due to exception (CC::Engine::Analyzers::ParserError): `python2 /usr/src/app/lib/cc/engine/analyzers/python/parser.py` exited with code 1:
Traceback (most recent call last):
  File "/usr/src/app/lib/cc/engine/analyzers/python/parser.py", line 51, in <module>
    print(json.dumps(to_json(ast.parse(source))))
  File "/usr/local/python2/lib/python2.7/ast.py", line 37, in parse
    return compile(source, filename, mode, PyCF_ONLY_AST)
  File "<unknown>", line 58
    def __init__(self, gcs_bucket: Union[storage.bucket.Bucket, str], org_data: str, proc_data: str, temp: str) -> None:
                                 ^
SyntaxError: invalid syntax


I, [2024-05-03T20:00:36.602286 #1]  INFO -- : Skipping file ./builds/phase3_log_daemon.py due to exception (CC::Engine::Analyzers::ParserError): `python2 /usr/src/app/lib/cc/engine/analyzers/python/parser.py` exited with code 1:
Traceback (most recent call last):
  File "/usr/src/app/lib/cc/engine/analyzers/python/parser.py", line 51, in <module>
    print(json.dumps(to_json(ast.parse(source))))
  File "/usr/local/python2/lib/python2.7/ast.py", line 37, in parse
    return compile(source, filename, mode, PyCF_ONLY_AST)
  File "<unknown>", line 30
    self.bucket: str = storage.Client().get_bucket(bucket_name)
               ^
SyntaxError: invalid syntax


I, [2024-05-03T20:00:36.775517 #1]  INFO -- : Skipping file ./builds/build_phase_3.py due to exception (CC::Engine::Analyzers::ParserError): `python2 /usr/src/app/lib/cc/engine/analyzers/python/parser.py` exited with code 1:
Traceback (most recent call last):
  File "/usr/src/app/lib/cc/engine/analyzers/python/parser.py", line 51, in <module>
    print(json.dumps(to_json(ast.parse(source))))
  File "/usr/local/python2/lib/python2.7/ast.py", line 37, in parse
    return compile(source, filename, mode, PyCF_ONLY_AST)
  File "<unknown>", line 36
    def uploads_build_data(bucket, gcs_location) -> None:
                                                 ^
SyntaxError: invalid syntax