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Function execute has a Cognitive Complexity of 90 (exceeds 5 allowed). Consider refactoring.
Open

    protected function execute(InputInterface $input, OutputInterface $output)
    {
        try {
            $file = $input->getArgument('file');
            if (!is_string($file)) {
Severity: Minor
Found in src/commands/PopulateDatabase.php - About 1 day to fix

Cognitive Complexity

Cognitive Complexity is a measure of how difficult a unit of code is to intuitively understand. Unlike Cyclomatic Complexity, which determines how difficult your code will be to test, Cognitive Complexity tells you how difficult your code will be to read and comprehend.

A method's cognitive complexity is based on a few simple rules:

  • Code is not considered more complex when it uses shorthand that the language provides for collapsing multiple statements into one
  • Code is considered more complex for each "break in the linear flow of the code"
  • Code is considered more complex when "flow breaking structures are nested"

Further reading

File Users.php has 528 lines of code (exceeds 250 allowed). Consider refactoring.
Open

<?php declare(strict_types=1);
/**
 * @author Nicolas CARPi <nico-git@deltablot.email>
 * @copyright 2012 Nicolas CARPi
 * @see https://www.elabftw.net Official website
Severity: Major
Found in src/models/Users.php - About 1 day to fix

    File AbstractEntity.php has 506 lines of code (exceeds 250 allowed). Consider refactoring.
    Open

    <?php declare(strict_types=1);
/**
 * @author Nicolas CARPi <nico-git@deltablot.email>
 * @copyright 2012 Nicolas CARPi
 * @see https://www.elabftw.net Official website
    Severity: Major
    Found in src/models/AbstractEntity.php - About 1 day to fix

      Method execute has 195 lines of code (exceeds 25 allowed). Consider refactoring.
      Open

          protected function execute(InputInterface $input, OutputInterface $output)
    {
        try {
            $file = $input->getArgument('file');
            if (!is_string($file)) {
      Severity: Major
      Found in src/commands/PopulateDatabase.php - About 7 hrs to fix

        Function displayPlasmidViewer has 189 lines of code (exceeds 25 allowed). Consider refactoring.
        Open

        export function displayPlasmidViewer(about: DOMStringMap): void {
  /* eslint-disable-next-line */
  const editor: any = {};
  const ApiC = new Api();
  Array.from(document.getElementsByClassName('viewer-ove')).forEach(el => {
        Severity: Major
        Found in src/ts/ove.ts - About 7 hrs to fix

          Function getTinymceBaseConfig has 179 lines of code (exceeds 25 allowed). Consider refactoring.
          Open

          export function getTinymceBaseConfig(page: string): object {
  let plugins = 'accordion advlist anchor autolink autoresize table searchreplace code fullscreen insertdatetime charmap lists save image link pagebreak codesample template mention visualblocks visualchars emoticons';
  let toolbar1 = 'undo redo | styles fontsize bold italic underline strikethrough | alignleft aligncenter alignright alignjustify | superscript subscript | bullist numlist outdent indent | forecolor backcolor | charmap emoticons adddate | codesample | link | sort-table | save';
  let removedMenuItems = 'newdocument, image, anchor';
  if (page === 'edit') {
          Severity: Major
          Found in src/ts/tinymce.ts - About 7 hrs to fix

            File Metadata.class.ts has 456 lines of code (exceeds 250 allowed). Consider refactoring.
            Open

            /**
 * @author Nicolas CARPi <nico-git@deltablot.email>
 * @copyright 2012 Nicolas CARPi
 * @see https://www.elabftw.net Official website
 * @license AGPL-3.0
            Severity: Minor
            Found in src/ts/Metadata.class.ts - About 6 hrs to fix

              File misc.ts has 448 lines of code (exceeds 250 allowed). Consider refactoring.
              Open

              /**
 * @author Nicolas CARPi <nico-git@deltablot.email>
 * @copyright 2012 Nicolas CARPi
 * @see https://www.elabftw.net Official website
 * @license AGPL-3.0
              Severity: Minor
              Found in src/ts/misc.ts - About 6 hrs to fix

                File common.ts has 433 lines of code (exceeds 250 allowed). Consider refactoring.
                Open

                /**
 * @author Nicolas CARPi <nico-git@deltablot.email>
 * @copyright 2012 Nicolas CARPi
 * @see https://www.elabftw.net Official website
 * @license AGPL-3.0
                Severity: Minor
                Found in src/ts/common.ts - About 6 hrs to fix

                  Function parseFile has 153 lines of code (exceeds 25 allowed). Consider refactoring.
                  Open

                      async function parseFile(fileContent): Promise<void> {
      const parsedData = await anyToJson(fileContent, {
        fileName: realName,
        guessIfProtein: true,
      });
                  Severity: Major
                  Found in src/ts/ove.ts - About 6 hrs to fix

                    File fr_FR.js has 419 lines of code (exceeds 250 allowed). Consider refactoring.
                    Open

                    tinymce.addI18n('fr_FR',{
"Redo": "R\u00e9tablir",
"Undo": "Annuler",
"Cut": "Couper",
"Copy": "Copier",
                    Severity: Minor
                    Found in src/js/tinymce-langs/fr_FR.js - About 6 hrs to fix

                      File es_ES.js has 419 lines of code (exceeds 250 allowed). Consider refactoring.
                      Open

                      tinymce.addI18n('es_ES',{
"Redo": "Rehacer",
"Undo": "Deshacer",
"Cut": "Cortar",
"Copy": "Copiar",
                      Severity: Minor
                      Found in src/js/tinymce-langs/es_ES.js - About 6 hrs to fix

                        File it_IT.js has 419 lines of code (exceeds 250 allowed). Consider refactoring.
                        Open

                        tinymce.addI18n('it_IT',{
"Redo": "Ripristina",
"Undo": "Annulla",
"Cut": "Taglia",
"Copy": "Copia",
                        Severity: Minor
                        Found in src/js/tinymce-langs/it_IT.js - About 6 hrs to fix

                          File zh_CN.js has 419 lines of code (exceeds 250 allowed). Consider refactoring.
                          Open

                          tinymce.addI18n('zh_CN',{
"Redo": "\u91cd\u505a",
"Undo": "\u64a4\u9500",
"Cut": "\u526a\u5207",
"Copy": "\u590d\u5236",
                          Severity: Minor
                          Found in src/js/tinymce-langs/zh_CN.js - About 6 hrs to fix

                            File ja_JP.js has 419 lines of code (exceeds 250 allowed). Consider refactoring.
                            Open

                            tinymce.addI18n('ja_JP',{
"Redo": "\u3084\u308a\u76f4\u3057",
"Undo": "\u5143\u306b\u623b\u3059",
"Cut": "\u5207\u308a\u53d6\u308a",
"Copy": "\u30b3\u30d4\u30fc",
                            Severity: Minor
                            Found in src/js/tinymce-langs/ja_JP.js - About 6 hrs to fix

                              File id_ID.js has 419 lines of code (exceeds 250 allowed). Consider refactoring.
                              Open

                              tinymce.addI18n('id_ID',{
"Redo": "Ulang",
"Undo": "Batalkan",
"Cut": "Potong",
"Copy": "Salin",
                              Severity: Minor
                              Found in src/js/tinymce-langs/id_ID.js - About 6 hrs to fix

                                File pt_PT.js has 419 lines of code (exceeds 250 allowed). Consider refactoring.
                                Open

                                tinymce.addI18n('pt_PT',{
"Redo": "Refazer",
"Undo": "Anular",
"Cut": "Cortar",
"Copy": "Copiar",
                                Severity: Minor
                                Found in src/js/tinymce-langs/pt_PT.js - About 6 hrs to fix

                                  File ca_ES.js has 419 lines of code (exceeds 250 allowed). Consider refactoring.
                                  Open

                                  tinymce.addI18n('ca_ES',{
"Redo": "Refer",
"Undo": "Desfer",
"Cut": "Retalla",
"Copy": "Copia",
                                  Severity: Minor
                                  Found in src/js/tinymce-langs/ca_ES.js - About 6 hrs to fix

                                    File ko_KR.js has 419 lines of code (exceeds 250 allowed). Consider refactoring.
                                    Open

                                    tinymce.addI18n('ko_KR',{
"Redo": "\ub2e4\uc2dc \uc2e4\ud589",
"Undo": "\uc2e4\ud589 \ucde8\uc18c",
"Cut": "\uc798\ub77c\ub0b4\uae30",
"Copy": "\ubcf5\uc0ac",
                                    Severity: Minor
                                    Found in src/js/tinymce-langs/ko_KR.js - About 6 hrs to fix

                                      File pt_BR.js has 419 lines of code (exceeds 250 allowed). Consider refactoring.
                                      Open

                                      tinymce.addI18n('pt_BR',{
"Redo": "Refazer",
"Undo": "Desfazer",
"Cut": "Cortar",
"Copy": "Copiar",
                                      Severity: Minor
                                      Found in src/js/tinymce-langs/pt_BR.js - About 6 hrs to fix
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