Function render has 28 lines of code (exceeds 25 allowed). Consider refactoring.

Open

  render() {
    return (
      <div>
        <ViewerContainer onChange={this._onViewerChange} />
        <div style={{ 'padding-top': '0.5em' }}>

Function _initLoadPanel has 28 lines of code (exceeds 25 allowed). Consider refactoring.

Open

Menu.prototype._initLoadPanel = function () {
  const self = this

  $(
    `${self._menuId} [data-form-type=miew-menu-form-load-pdb] [data-tooltip="tooltip"]`

Function DebugTracer has 28 lines of code (exceeds 25 allowed). Consider refactoring.

Open

function DebugTracer(namespace) {
  let enabled = false

  this.enable = function (on) {
    enabled = on

Function DebugTracer has 28 lines of code (exceeds 25 allowed). Consider refactoring.

Open

function DebugTracer(namespace) {
  let enabled = false

  this.enable = function (on) {
    enabled = on

Function processTransparentMaterial has 28 lines of code (exceeds 25 allowed). Consider refactoring.

Open

const processTransparentMaterial = (function () {
  const matValues = {
    prepassTransparancy: true,
    fakeOpacity: false,
    transparent: false,

Function buildGeometry has 28 lines of code (exceeds 25 allowed). Consider refactoring.

Open

  buildGeometry(complex, colorer, mask, material) {
    const polyComplexity = this.opts.polyComplexity
      ? this.opts.polyComplexity[this.settings.now.resolution]
      : 0
    const groupList = this.depGroups

Function addPair has 28 lines of code (exceeds 25 allowed). Consider refactoring.

Open

  addPair(indexA, indexB) {
    const ia = indexA < indexB ? indexA : indexB
    const ib = indexA > indexB ? indexA : indexB
    const codeToAdd = ia + (ib << cMaxNeighbours)

Function compare has 28 lines of code (exceeds 25 allowed). Consider refactoring.

Open

  compare(repSettings) {
    const diff = {}

    const selStr = String(this.selector)
    if (

Function parseNode has 28 lines of code (exceeds 25 allowed). Consider refactoring.

Open

    function parseNode(xmlNode, result) {
      if (xmlNode.nodeName === '#text' && xmlNode.nodeValue.trim() === '') {
        return
      }

Function _setOrigins has 28 lines of code (exceeds 25 allowed). Consider refactoring.

Open

  _setOrigins() {
    const [xaxis, yaxis, zaxis] = this._getAxis()
    this._setAxisIndices()

    const header = this._header

Function _extractAssemblies has 28 lines of code (exceeds 25 allowed). Consider refactoring.

Open

  _extractAssemblies(complex, complexData) {
    const { asymDict } = this
    const asmGen = complexData.pdbx_struct_assembly_gen
    if (!asmGen) {
      return

Function _startAnimation has 28 lines of code (exceeds 25 allowed). Consider refactoring.

Open

  _startAnimation(fileData) {
    this._stopAnimation()
    const self = this
    const visual = this._getComplexVisual()
    if (visual === null) {

Function getOBB has 28 lines of code (exceeds 25 allowed). Consider refactoring.

Open

  getOBB(matrix, OBB) {
    this._bBox.makeEmpty()

    this._forEachVisual((visual) => {
      this._bSphereForOneVisual.copy(visual.getBoundaries().boundingSphere)

Function createClass has a Cognitive Complexity of 10 (exceeds 5 allowed). Consider refactoring.

Open

var createClass = createCommonjsModule(function (module) {
function _defineProperties(target, props) {
  for (var i = 0; i < props.length; i++) {
    var descriptor = props[i];
    descriptor.enumerable = descriptor.enumerable || false;

• Read up
  Read up

Function createClass has a Cognitive Complexity of 10 (exceeds 5 allowed). Consider refactoring.

Open

var createClass = createCommonjsModule(function (module) {
function _defineProperties(target, props) {
  for (var i = 0; i < props.length; i++) {
    var descriptor = props[i];
    descriptor.enumerable = descriptor.enumerable || false;

• Read up
  Read up

Function _calcPoints has a Cognitive Complexity of 10 (exceeds 5 allowed). Consider refactoring.

Open

function _calcPoints(residues, firstIdx, lastIdx, boundaries) {
  const left = boundaries.start
  const right = boundaries.end
  function _prevIdx(idx) {
    return idx > left && residues[idx - 1]._isValid ? idx - 1 : idx

• Read up
  Read up

Function updateToFrame has a Cognitive Complexity of 10 (exceeds 5 allowed). Consider refactoring.

Open

  updateToFrame(frameData) {
    // This method looks like a copy paste. However, it
    // was decided to postpone animation refactoring until GFX is fixed.

    const residues = frameData.getResidues()

• Read up
  Read up

Function mouseup has a Cognitive Complexity of 10 (exceeds 5 allowed). Consider refactoring.

Open

Picker.prototype.mouseup = function (event) {
  const self = this

  event.preventDefault()
  event.stopPropagation()

• Read up
  Read up

Function _parseAtoms has a Cognitive Complexity of 10 (exceeds 5 allowed). Consider refactoring.

Open

  _parseAtoms(atomsNum, MOL2Data) {
    this._toHeaderString('ATOM', MOL2Data)

    for (let i = 0; i < atomsNum; i++) {
      const parsedStr = splitToFields(MOL2Data[++this._currPosIdx])

• Read up
  Read up

Function _fixDir has a Cognitive Complexity of 10 (exceeds 5 allowed). Consider refactoring.

Open

  _fixDir(refPoint, currDir, posGetter) {
    // count atoms to the right and to the left of the current plane
    let rightCount = 0
    let leftCount = 0
    const tmpVec = refPoint.clone()

• Read up
  Read up