Function calcNormalDir has a Cognitive Complexity of 10 (exceeds 5 allowed). Consider refactoring.

Open

  calcNormalDir(posGetter) {
    const left = this._left
    const right = this._right
    let first = left
    let second = right

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Function _fillCmpNoedit has a Cognitive Complexity of 10 (exceeds 5 allowed). Consider refactoring.

Open

  _fillCmpNoedit() {
    const comp = new Component(this)
    comp._index = 0

    const residues = this._residues

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Function _compareReps has a Cognitive Complexity of 10 (exceeds 5 allowed). Consider refactoring.

Open

  _compareReps(complexVisual, compareWithDefaults) {
    const ans = {}
    let repCount = 0

    if (complexVisual) {

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Function setOptions has a Cognitive Complexity of 10 (exceeds 5 allowed). Consider refactoring.

Open

  setOptions(opts) {
    if (typeof opts === 'string') {
      opts = Miew.options.fromAttr(opts)
    }
    if (opts.reps) {

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Function wrapNativeSuper has 27 lines of code (exceeds 25 allowed). Consider refactoring.

Open

var wrapNativeSuper = createCommonjsModule(function (module) {
function _wrapNativeSuper(Class) {
  var _cache = typeof Map === "function" ? new Map() : undefined;
  module.exports = _wrapNativeSuper = function _wrapNativeSuper(Class) {
    if (Class === null || !isNativeFunction(Class)) return Class;

Function wrapNativeSuper has 27 lines of code (exceeds 25 allowed). Consider refactoring.

Open

var wrapNativeSuper = createCommonjsModule(function (module) {
function _wrapNativeSuper(Class) {
  var _cache = typeof Map === "function" ? new Map() : undefined;
  module.exports = _wrapNativeSuper = function _wrapNativeSuper(Class) {
    if (Class === null || !isNativeFunction(Class)) return Class;

Function _computeSurface has 27 lines of code (exceeds 25 allowed). Consider refactoring.

Open

  _computeSurface(packedArrays, box, boundaries, params) {
    const contactSurface = new ContactSurface(packedArrays, boundaries, params)
    contactSurface.build()

    const surface = {

Function processColFromPosMaterial has 27 lines of code (exceeds 25 allowed). Consider refactoring.

Open

const processColFromPosMaterial = (function () {
  const matValues = {
    colorFromPos: true,
    transparent: false,
    colorFromDepth: false,

Function mousemove has 27 lines of code (exceeds 25 allowed). Consider refactoring.

Open

ObjectControls.prototype.mousemove = function (event) {
  if (this.enabled === false || this._state === STATE.NONE) {
    return
  }

Function setFrame has 27 lines of code (exceeds 25 allowed). Consider refactoring.

Open

  setFrame(frameIdx) {
    this.frameIsReady = false
    if (
      frameIdx >= this._framesRange.start &&
      frameIdx <= this._framesRange.end

Function _collectSpheresInfo has 27 lines of code (exceeds 25 allowed). Consider refactoring.

Open

  _collectSpheresInfo(mesh) {
    const {
      geometry: {
        attributes: { position, color },
        index

Function _findSuitableMolecule has 27 lines of code (exceeds 25 allowed). Consider refactoring.

Open

  _findSuitableMolecule(data, molSet) {
    for (const key in data) {
      if (key === 'xmlNode') {
        continue
      } else if (key === 'molecule') {

Function _compareReps has 27 lines of code (exceeds 25 allowed). Consider refactoring.

Open

  _compareReps(complexVisual, compareWithDefaults) {
    const ans = {}
    let repCount = 0

    if (complexVisual) {

Function center has 27 lines of code (exceeds 25 allowed). Consider refactoring.

Open

  center(selector) {
    // no arguments - center on current selection;
    if (selector === undefined) {
      this.setPivotSubset()
      this._needRender = true

Function _initReprList has 26 lines of code (exceeds 25 allowed). Consider refactoring.

Open

Menu.prototype._initReprList = function () {
  this._fillReprList()
  this._curReprIdx = this._viewer.repCurrent()
  $(
    `${this._menuId} .panel-menu[data-panel-type=miew-menu-panel-representation] .miew-repr-list .panel.valid:eq(${this._curReprIdx}) .panel-heading`

Function _onUpdate has 26 lines of code (exceeds 25 allowed). Consider refactoring.

Open

  obj._onUpdate = function () {
    if (
      obj.isScriptingCommandAvailable !== undefined &&
      obj.isScriptingCommandAvailable() &&
      !obj._building

Function raycast has 26 lines of code (exceeds 25 allowed). Consider refactoring.

Open

  raycast(raycaster, intersects) {
    const ray = TransformGroup._ray
    const inverseMatrix = TransformGroup._inverseMatrix
    const { children } = this
    ray.copy(raycaster.ray)

Function _findNumVoxels has 26 lines of code (exceeds 25 allowed). Consider refactoring.

Open

  _findNumVoxels(posRadArray, params) {
    const { numVoxels } = this
    const minMaxValues = this._findMinMax(posRadArray)
    const minCoordRad = minMaxValues.minPosRad
    const maxCoordRad = minMaxValues.maxPosRad

Function _detectLeadWing has 26 lines of code (exceeds 25 allowed). Consider refactoring.

Open

  _detectLeadWing(dst, next, getAtomPosition) {
    const leadAtom = this._findFirstAtomInList(cNucleicControlNames)
    let wingStart = this._findFirstAtomInList(cNucleicWing1Names)
    let wingEnd = this._findFirstAtomInList(cNucleicWing2Names)

Function _createSecondary has 26 lines of code (exceeds 25 allowed). Consider refactoring.

Open

function _createSecondary(strArray, complex) {
  const residues = complex._residues
  const nRes = residues.length
  const resid = new Uint8Array(nRes)